FFCP PHASE1:Hg19::chr2:216230257..216230303,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:216230257..216230303,- to FFCP PHASE1:Hg19::chr2:216230257..216230303,-: NSchange) |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2335 | |EntrezGene=2335 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3778 | |HGNC=3778 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-17bp_to_ENST00000469569_5end | |||
|cluster_id=chr2:216230257..216230303,- | |||
|coexpression_cluster_id=C79 | |||
|description=CAGE_peak_49_at_FN1_5end | |||
|id=chr2:216230257..216230303,- | |||
|ontology_enrichment_celltype=CL:0000055!6.52e-35!180;CL:0000057!9.79e-26!75;CL:0000680!2.46e-18!57;CL:0000056!2.46e-18!57;CL:0000355!2.46e-18!57;CL:0002371!1.18e-17!591;CL:0000183!1.51e-17!59;CL:0000187!8.45e-17!54;CL:0000144!9.23e-15!625;CL:0000393!3.90e-13!60;CL:0000211!3.90e-13!60;CL:0000048!3.97e-13!430;CL:0000192!4.68e-13!42;CL:0000514!4.68e-13!42;CL:0000723!2.03e-12!436;CL:0000034!8.08e-12!444;CL:0000359!1.78e-10!32;CL:0000548!2.24e-10!679;CL:0000004!2.24e-10!679;CL:0000255!2.24e-10!679;CL:0000012!6.61e-10!682;CL:0000222!1.13e-09!119;CL:0002620!1.19e-09!23;CL:0000220!1.86e-09!246;CL:0002494!2.45e-09!16;CL:0002321!2.66e-09!248;CL:0002334!9.72e-08!12 | |||
|ontology_enrichment_celltype_v019=CL:0000134;1.42e-13;55!CL:0000723;3.37e-13;61!CL:0002494;3.00e-12;16!CL:0000048;3.88e-11;58!CL:0000057;3.18e-10;73!CL:0000034;2.12e-09;69!CL:0002620;5.11e-09;23!CL:0002320;1.87e-08;188!CL:0000359;4.18e-08;32!CL:0002334;4.76e-08;12!CL:0000187;2.74e-07;55!CL:0002570;3.78e-07;8!CL:0000349;4.29e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.93e-24,76;CL:0000048,3.43e-22,427;CL:0000723,3.41e-21,433;CL:0000034,6.52e-20,441;CL:0000680,8.16e-15,58;CL:0000056,8.16e-15,58;CL:0000355,8.16e-15,58;CL:0000187,5.16e-13,55;CL:0002494,2.38e-12,16;CL:0002320,2.21e-11,361;CL:0000393,1.26e-10,61;CL:0000211,1.26e-10,61;CL:0000134,1.38e-10,354;CL:0000192,2.73e-09,43;CL:0000514,2.73e-09,43;CL:0002620,5.61e-09,23;CL:0000359,1.93e-08,32;CL:0000219,3.47e-08,386;CL:0002334,4.24e-08,12;CL:0002570,2.38e-07,8;CL:0000349,4.01e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000355;5.21e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;4.10e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.27e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.63e-20!83;UBERON:0002329!1.63e-20!83;UBERON:0003077!1.63e-20!83;UBERON:0003059!1.63e-20!83;UBERON:0007282!1.63e-20!83;UBERON:0009618!1.63e-20!83;UBERON:0007285!1.63e-20!83;UBERON:0004290!3.20e-20!70;UBERON:0000486!2.25e-18!82;UBERON:0005256!9.00e-18!143;UBERON:0001134!4.77e-17!61;UBERON:0002036!4.77e-17!61;UBERON:0003082!4.77e-17!61;UBERON:0002385!2.23e-16!63;UBERON:0001015!2.23e-16!63;UBERON:0000383!2.23e-16!63;UBERON:0004872!6.38e-14!84;UBERON:0000490!2.81e-13!138;UBERON:0003914!3.23e-13!118;UBERON:0002100!7.42e-13!216;UBERON:0002049!1.88e-12!79;UBERON:0007798!1.88e-12!79;UBERON:0001637!5.39e-12!42;UBERON:0003509!5.39e-12!42;UBERON:0004572!5.39e-12!42;UBERON:0004535!3.01e-11!110;UBERON:0001009!1.09e-10!113;UBERON:0000055!5.55e-10!69;UBERON:0001981!1.59e-09!60;UBERON:0007500!1.59e-09!60;UBERON:0004537!1.59e-09!60;UBERON:0006965!1.59e-09!60;UBERON:0004573!5.08e-09!33;UBERON:0004571!5.08e-09!33;UBERON:0002199!1.71e-08!45;UBERON:0002416!1.71e-08!45;UBERON:0003104!7.86e-08!238;UBERON:0009142!7.86e-08!238;UBERON:0000948!8.66e-08!24;UBERON:0005498!8.66e-08!24;UBERON:0004140!8.66e-08!24;UBERON:0009881!8.66e-08!24;UBERON:0004141!8.66e-08!24;UBERON:0003084!8.66e-08!24;UBERON:0007005!8.66e-08!24;UBERON:0004139!8.66e-08!24;UBERON:0004291!8.66e-08!24;UBERON:0002097!1.14e-07!40;UBERON:0003102!1.24e-07!95;UBERON:0004923!3.21e-07!57;UBERON:0000468!6.92e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.15e-07;198!UBERON:0000948;1.46e-07;22!UBERON:0001013;6.05e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,5.80e-16,73;UBERON:0002329,9.63e-16,71;UBERON:0003059,9.63e-16,71;UBERON:0007282,9.63e-16,71;UBERON:0004290,9.63e-16,71;UBERON:0009618,9.63e-16,71;UBERON:0007503,2.17e-15,78;UBERON:0003077,2.57e-15,72;UBERON:0007285,2.57e-15,72;UBERON:0000486,1.71e-13,83;UBERON:0001134,4.85e-13,62;UBERON:0002036,4.85e-13,62;UBERON:0003082,4.85e-13,62;UBERON:0005256,7.11e-13,122;UBERON:0002385,3.01e-12,64;UBERON:0001015,3.01e-12,64;UBERON:0000383,3.01e-12,64;UBERON:0002384,3.22e-12,371;UBERON:0003104,5.26e-10,160;UBERON:0009142,5.26e-10,160;UBERON:0000926,3.94e-09,315;UBERON:0004120,3.94e-09,315;UBERON:0006603,3.94e-09,315;UBERON:0000948,5.69e-09,24;UBERON:0005498,5.69e-09,24;UBERON:0004140,5.69e-09,24;UBERON:0009881,5.69e-09,24;UBERON:0004141,5.69e-09,24;UBERON:0003084,5.69e-09,24;UBERON:0007005,5.69e-09,24;UBERON:0004139,5.69e-09,24;UBERON:0004291,5.69e-09,24;UBERON:0004872,1.79e-08,83;UBERON:0002199,3.78e-08,46;UBERON:0002416,3.78e-08,46;UBERON:0000490,7.39e-08,148;UBERON:0004923,1.17e-07,66;UBERON:0001637,1.45e-07,42;UBERON:0003509,1.45e-07,42;UBERON:0004572,1.45e-07,42;UBERON:0002100,1.51e-07,199;UBERON:0002097,2.10e-07,41;UBERON:0007100,2.22e-07,27;UBERON:0001013,4.18e-07,14;UBERON:0004535,5.08e-07,109;UBERON:0003914,5.15e-07,117 | |||
|phase1_expression=5.4503513781167,6.63711624062048,4.65149533516705,5.00366491765652,1.34088328328186,12.2127393374052,2.53299878168311,0.631719873426831,0,0.491467873003018,0,1.74753097704138,2.90143676051299,0.74259811776028,2.98257638155124,3.36162573225888,0.602694528023977,1.46062018077475,2.92759679274304,0.246242116153576,0.204000691244253,0.313454721478088,0.286235987131057,0.410623275218653,0.627713197974014,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,34.1329612839546,4.02420515822182,1.91793842765295,1.44575660953827,4.51204119572301,1.30361867064741,42.9454411407594,82.7279279514481,0.283604451492204,2.88248216701333,0.87834785693126,0,0,0,0,0,0.132957960518865,0,0,0,0.596287222100115,0.860234595106124,0.347140501607594,1.69592382577203,0.838998872419812,0.550236083880135,0.417989933073621,1.03366703667732,0.35576626268671,1.00416183829401,0,0.760272105718513,0,0,2.43042584364528,0.357198913136319,0,0,0,0.949265659568129,0.549605231791222,0,0,0.436094052142534,8.94549513051573,5.06522046658319,13.902963985388,9.17877186396204,3.19201543978521,6.16745360156538,17.0798393167528,3.7000132262574,4.35695449559673,3.09834545760283,2.94231425604226,4.99479511228274,13.25204626304,0.937285727335186,3.43376084513353,1.1409436430889,3.88566569434683,0.587172493218824,1.45685649931318,0.561803226808994,1.63323337003915,0.737005903870608,0.516628905878827,3.56400857184616,3.4617370098998,1.82032272387605,2.87447256726495,0.841680569770331,0.375355559615893,0,0.438977620880838,3.67785354958824,0.751190294532984,2.49550802952046,4.12596162084383,2.34913127700424,4.87443372666992,2.40072876867522,2.16410311400722,5.15281080091258,2.23340227597908,10.2953562667172,2.14361411354637,6.56327813034698,2.85354685791128,1.93975268182574,7.81021103536552,0.705264687593482,1.18692414617341,0.773043412653187,1.63647672354501,0.573609190778008,0.121973706129595,0,0.580969714347592,0.310983165046111,0,0.36497735907583,4.69348596989448,5.14592750554308,1.38134921352481,7.89425477654364,8.66255378003503,0,0,0,0,0,0,0,0,0,0,0,2.8810180793198,4.41026134156626,1.26755034821831,0.982827216677626,1.18157981336281,0,0.368965315629341,0.857839051492628,0.98775256867763,0,0,0,0.325808305310325,1.03993478527958,0,0,4.3441216867254,0.144366447761074,0,0.951270761172991,0,0,0,0,0,0,1.00789276919316,0,1.43293636324557,0.871901815541886,2.30029607499127,0,0,0,0,0,0,0,0,3.4214489204541,0.514137463516618,0,0,0.784917590417525,1.30788020649984,0.51336800074665,2.06834745212444,7.15312891703765,1.690605505112,0.26593811658487,0,2.31486636835928,1.41849132023278,1.0656887160644,1.14382394926518,2.17048642156577,2.46972101034231,3.25736184293735,1.06617584622764,0.791951872933429,0.904318131178758,2.61460037580088,0.099972991182057,0,0,2.10833939483032,3.35474797688216,1.14861935834114,0,6.37037749337349,4.72595541865882,1.61154866915906,0,0,0,0,0,0,0,0,0,0,0,0,0.981531933753119,3.00102312635806,2.17012018959788,2.9115920614313,6.78030157429215,2.20783381047509,5.15422225967938,3.61135319673263,2.27407504055985,0,1.32845119707087,4.05612170791747,0.695068915744663,1.37060810223918,0.686286847621712,0,0,0,0.303127571446259,6.65741758041988,1.5119514666484,10.6686357362074,19.0292846877197,13.1910244383545,6.27881831352935,5.62877973973374,7.88184213603677,7.42090332224955,2.31314540703983,4.6166048581413,0.821271560138091,1.55776328755086,0.464841513839837,0.362578348774867,4.81215528727884,0,1.14814448164607,0.728364672026868,1.04899531967539,0,0.15403067420883,0,0,0.211103257785751,0,0.170093705276516,1.72732732881711,1.54227252690289,0.541892875087706,2.50844886927427,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0.574265537996172,0,0,0.773365746336976,2.92692372517824,2.6095624703442,1.51620229732984,6.33779444722814,4.64053420525531,2.64202544989913,0.267096106940212,2.31398881505369,2.11409074101617,3.1903178123646,1.51736671283325,0.929691098594572,11.6480568327337,2.7881490806424,3.38836938193698,0.532306030317022,0,3.52116016297448,0.429374660225974,2.232950216158,4.74569137078089,2.2875623270859,0.767693373934002,4.2793898803392,3.5002357271853,1.56989728039846,2.87795932133304,1.09814811894422,0.942499218765491,1.41527737101321,3.17020642346017,2.10629228119491,0.975267478179181,0.974853958525138,2.11300293513511,0.272999822815972,0.848432591722276,7.910568163417,0.551365343546124,0,0.876901770507525,3.47265320560013,5.24715801637306,4.05820753925408,1.8589409885985,1.69017361519345,0.860468113224309,2.45622602532803,7.133421029625,1.41904425628239,1.26664581178598,2.63435914367922,0,0,0.192444225451024,0,1.08890984861323,0.941438007767792,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.6534576910976,0.890894042497916,3.99308912729002,0,0,5.23150913607658,0,0,0.996239941255349,0,0,0,0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| ||
|short_description=p49@FN1 | |||
}} | }} |
Latest revision as of 01:51, 20 September 2015
Short description: | p49@FN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_49_at_FN1_5end |
Coexpression cluster: | C79_chorionic_Chondrocyte_Cardiac_Smooth_Fibroblast_Preadipocyte_Mesenchymal |
Association with transcript: | -17bp_to_ENST00000469569_5end |
EntrezGene: | FN1 |
HGNC: | 3778 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.93e-24 | 76 |
multi fate stem cell | 3.43e-22 | 427 |
somatic stem cell | 3.41e-21 | 433 |
stem cell | 6.52e-20 | 441 |
muscle precursor cell | 8.16e-15 | 58 |
myoblast | 8.16e-15 | 58 |
multi-potent skeletal muscle stem cell | 8.16e-15 | 58 |
muscle cell | 5.16e-13 | 55 |
cardiocyte | 2.38e-12 | 16 |
connective tissue cell | 2.21e-11 | 361 |
electrically responsive cell | 1.26e-10 | 61 |
electrically active cell | 1.26e-10 | 61 |
mesenchymal cell | 1.38e-10 | 354 |
smooth muscle cell | 2.73e-09 | 43 |
smooth muscle myoblast | 2.73e-09 | 43 |
skin fibroblast | 5.61e-09 | 23 |
vascular associated smooth muscle cell | 1.93e-08 | 32 |
motile cell | 3.47e-08 | 386 |
preadipocyte | 4.24e-08 | 12 |
mesenchymal stem cell of adipose | 2.38e-07 | 8 |
extraembryonic cell | 4.01e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.27e-07 | 14 |