FFCP PHASE1:Hg19::chr17:42427826..42427839,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2896 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4601 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=16bp_to_uc002igr.1_5end | |||
|cluster_id=chr17:42427826..42427839,+ | |||
|coexpression_cluster_id=C143 | |||
|description=CAGE_peak_5_at_GRN_5end | |||
|id=chr17:42427826..42427839,+ | |||
|ontology_enrichment_celltype=CL:0002009!3.67e-22!65;CL:0002194!6.39e-22!63;CL:0000576!6.39e-22!63;CL:0000040!6.39e-22!63;CL:0000559!6.39e-22!63;CL:0000557!3.05e-19!71;CL:0002057!1.71e-18!42;CL:0000766!2.69e-18!76;CL:0000839!3.26e-18!70;CL:0000860!3.13e-17!45;CL:0000548!2.00e-12!679;CL:0000004!2.00e-12!679;CL:0000255!2.00e-12!679;CL:0000144!6.98e-12!625;CL:0000012!1.01e-11!682;CL:0002371!1.05e-11!591;CL:0000063!1.41e-09!578;CL:0000048!2.65e-09!430;CL:0000723!2.69e-09!436;CL:0000763!5.45e-09!112;CL:0000049!5.45e-09!112;CL:0000034!2.02e-08!444;CL:0002320!2.63e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000473;4.72e-35;39!CL:0000234;4.72e-35;39!CL:0000860;1.31e-34;33!CL:0002057;1.31e-34;33!CL:0000576;1.21e-19;48!CL:0000766;1.74e-12;69!CL:0000235;1.27e-09;6!CL:0000763;6.49e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,3.83e-37,48;CL:0000234,3.83e-37,48;CL:0002009,1.14e-36,61;CL:0002194,1.88e-36,59;CL:0000576,1.88e-36,59;CL:0000040,1.88e-36,59;CL:0000559,1.88e-36,59;CL:0000557,5.38e-32,67;CL:0000839,5.59e-31,66;CL:0000860,1.58e-29,42;CL:0002057,1.58e-29,42;CL:0000766,8.98e-29,72;CL:0000763,3.71e-17,108;CL:0000049,3.71e-17,108;CL:0002087,1.88e-13,115;CL:0002031,2.52e-12,120;CL:0000738,1.95e-11,136;CL:0000235,1.62e-09,6;CL:0000048,2.88e-09,427;CL:0000723,3.67e-09,433;CL:0002320,6.39e-09,361;CL:0000134,1.10e-08,354;CL:0000034,1.60e-08,441;CL:0000988,3.24e-08,177;CL:0000219,5.52e-08,386;CL:0000037,8.04e-08,168;CL:0002032,1.28e-07,161;CL:0000837,1.28e-07,161 | |||
|ontology_enrichment_development_v019=CL:0002057;1.10e-21;42!CL:0000049;9.29e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.26e-16!80;UBERON:0002405!2.67e-15!115;UBERON:0001474!2.93e-14!86;UBERON:0004765!6.55e-14!101;UBERON:0001434!6.55e-14!101;UBERON:0002193!1.27e-13!112;UBERON:0002204!6.07e-13!167;UBERON:0002390!2.19e-12!102;UBERON:0003061!2.19e-12!102;UBERON:0003081!2.28e-11!216;UBERON:0000926!3.60e-10!448;UBERON:0004120!3.60e-10!448;UBERON:0006603!3.60e-10!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.01e-27,76;UBERON:0001474,1.44e-24,82;UBERON:0004765,3.38e-23,90;UBERON:0002405,3.84e-23,93;UBERON:0001434,2.69e-21,100;UBERON:0002390,2.26e-20,98;UBERON:0003061,2.26e-20,98;UBERON:0002193,6.77e-20,108;UBERON:0003081,1.27e-16,203;UBERON:0002204,6.93e-15,167;UBERON:0000926,5.08e-12,315;UBERON:0004120,5.08e-12,315;UBERON:0006603,5.08e-12,315;UBERON:0002384,4.46e-08,371 | |||
|phase1_expression=0.54503513781167,1.07050261945492,0.422863212287913,1.0007329835313,2.68176656656373,0,0,0,0.522371256399677,0.245733936501509,2.79120467188971,0,1.58260186937072,0.123766352960047,0.662794751455832,3.36162573225888,2.41077811209591,0,1.95173119516203,0.246242116153576,0.612002073732759,1.25381888591235,0,0,0.376627918784408,0.152826811495903,0.0821005894499457,0.157421562627358,0,0.383829398097213,0.464448369948228,0.919421224478927,0.90361775633475,3.32778609150109,0.232401601740905,0,0,0,1.20326668482085,0.217010870715852,5.37397138175818,2.91504299417082,3.34848237924443,5.81592955118259,4.1566353805769,4.60909716256851,3.95129362739664,4.11167888021826,4.95530193432166,4.60307827715441,3.84241059793651,3.31075121844019,1.72372840368309,0.645484683583826,2.70852973188684,5.64727018627814,11.7349644524874,3.37085226667627,3.97909060082173,3.20929027076094,5.11469700639233,5.60747210317417,5.78444607102732,4.26224750532694,4.35313857942876,3.97169657283798,4.35975574296902,3.76872997885115,4.17186334736161,1.52032191293582,4.84319602106695,2.94622108790052,1.58231193720442,0.845021145247767,0.637812899895131,0.838634582033504,1.79725809834392,0.901061357049038,1.28580469357664,0,0.39783335439818,0.182664153764634,1.75996244461323,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0.445641827540694,0,0.221533894583621,0,0,0,0,0.276350017785848,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0.267440195783507,0,2.43806866313962,0,0.383587685530591,0,1.00267582127178,0.434539556882471,1.5905718941022,1.45990461090791,0.283604451492204,0.665188192387692,0.175669571386252,0.130979075497713,0,0.370784442784429,2.27183175558278,0.522389211897802,3.45690697349049,0.238490624305342,1.71598473234038,0.371457501329565,0,0,0.347140501607594,0,0.419499436209906,0.550236083880135,0.417989933073621,0.775250277507987,0.71153252537342,0.33472061276467,0.805658634218294,0.760272105718513,0.976248230192678,0,0.81014194788176,0.267899184852239,0.22452937262617,0.112611480483322,0,0,0.366403487860815,0,0,0,0,0.12663051166458,0.662045904066094,3.44203944898576,0.709336764396714,1.68203280042692,1.06748995729705,1.2333377420858,0.311211035399766,0.269421344139376,0,0.151357427644931,1.15235184896,0.234321431833797,0.312160076830321,0,0.896692083310806,0.23486899728753,0,0,0.204154171254893,0.491337269247072,0.309977343527296,0,1.48360157567134,0,1.43723628363248,0,0.250237039743928,0.277064115484183,0.877955241761676,1.22595118319608,1.20190447125277,0.113432183160021,0,0.427114777637135,0.635795703478686,1.20036438433761,0.309157587715317,0.515281080091258,0.558350568994769,0.675105328965065,0.292311015483596,0,0.368199594569197,0.646584227275248,0.355009592516614,0.503760491138201,0.508681776931463,1.15956511897978,0.545492241181669,0.573609190778008,0.121973706129595,0.132529768321485,0.116193942869518,0.310983165046111,0,0.36497735907583,1.56449532329816,0.643240938192885,0,0.464367928031979,1.44375896333917,0.828147600278907,0.674338760312407,0.482022059766964,0.220587945464788,0.653638332277218,0.237270619111097,0.808987848960987,0.588664395376038,0,0.738155454624648,1.40241773803446,0.8231480226628,1.47008711385542,0,1.96565443335525,0.590789906681404,0,0,0.171567810298526,0.548751427043128,1.1240175325762,0,0.462942225792648,0.651616610620649,1.03993478527958,0,0.34779121492523,0,0.721832238805369,0.925971025153221,1.14152491340759,0,0,3.20082107913617,2.10603838625314,2.52672975890838,0,1.00789276919316,0.283550194484773,0.0895585227028483,0.581267877027924,0.766765358330422,0,0.352193736052904,0,0.288239906833923,0.25248486685276,0.063497894292169,1.52795370223311,1.17217447210047,5.13217338068116,0.822619941626588,2.10240140490742,0.571652865261156,0,0.43596006883328,0,0.646358578788889,3.57656445851882,0,0.531876233169741,2.08014873822732,0,0,0,0.428933980974443,0.542621605391443,0,0,0,1.58390374586686,0.602878754119172,1.74306691720059,0.699810938274399,15.8110914833548,9.5428847372104,18.9750545534728,0.239624855491583,1.14861935834114,0,1.01346914667305,0.61642896765115,0.358121926479791,0.112085143993527,0,0,0,0,1.30139853857622,0,0,0,0.749007023947182,2.99161459204025,0.414415513436035,0.24538298343828,1.50051156317903,0.813795071099207,0.623912584592421,0.178428988797162,0.946214490203608,0.702848489956279,0.902838299183157,11.3703752027992,3.10419213877515,0,0.368738337083406,0.60818530127658,0.783204629850962,1.37257369524342,0.206768026122887,2.37285620900479,0.533637789017222,0.606255142892519,0,0.907170879989041,1.24053903909388,0.460385919864187,1.40330047216537,1.02511319404561,0.511707249066704,0.965123526861645,0,0,0.177561725313127,0.0821271560138091,0.519254429183621,0.232420756919918,0.362578348774867,3.20810352485256,1.01289087829486,0.34444334449382,1.45672934405374,1.31124414959424,0,0.231046011313244,0,0,0.316654886678627,3.4120015221269,0.170093705276516,0.215915916102139,0,0,2.50844886927427,0.254876273045038,0,0,0,0,0,0.984043937099117,0.976135183992909,0.309123034943167,0.0915694648183434,0.082509499920588,0,3.90036147621913,0,0,0.462145851343933,0.460511024178389,0,0.537101224341368,0.145016693914229,0,0,0.495854746082934,0.960950336825531,0.127612712494584,0.6069466851333,0,1.5740617341532,0.6970372701606,0.308033580176089,1.06461206063404,0.869932992075073,0,0.286249773483982,0.372158369359667,0.316379424718726,0.38126038784765,0.767693373934002,0,0.318203247925937,2.35484592059769,0.359744915166629,1.37268514868027,0.117812402345686,0,0,0.842516912477962,0,1.21856744815642,1.05650146756755,0,0.989838023675989,0,0.551365343546124,0.66343897524122,1.75380354101505,0.578775534266688,1.31178950409327,0.608731130888112,0.6196469961995,0.281695602532241,0,0.0982490410131212,0.35667105148125,0,0.633322905892992,0.658589785919804,0,0,0.48111056362756,0,2.17781969722645,0.282431402330337,1.72202149068492,0,0.886860307073351,0.229723400206959,0,0,0.569647187174163,0,0.411362273086194,0.648473311192717,0,0,0.427296284509893,0,0.490080431962063,0.185803175125719,0,0.0711418433484141,0,0.199579371432817,0.5745161103971,0.211673582723883,0.324621940274555,0,0.228234679033192,0,2.50634477090067,0.677167111206413,0,0,0,1.37402137902306,0,0.447352215784832,0.500547425135725,0.19538809540204,0,0,0,0.33307196799782,0,0,0.439524537815682,0.121360521749513,0.222886768554957,0,0.47748896947538,0.296964680832639,0,0,0.140669416410513,0.333926115068718,0,0.211125408127993,0,0,0,0.306806047506464,0.123084805461069,0.622079175323615,0.0898683511473268,0,0,0.197286811273867,2.3948309234694,0,0,0,0,0.260427761085233,0,0.724999575434793,0.1137934482855,0,0.236387681767936,0,0,0,0,0,0,0,0,0.219385397153973,0.10893846351899,0,0.230850775511391,0.455768223388005,0,0.0897576444097721,0.108647371922008,0.31900115973192,0.641183153813036,0,0,0,0.166211681900156,0,0,0.167821586975843,0,0,1.05499032264014,0.652931232636591,0,0,0,0.442287822516696,2.4441205797345,0,0.123563938946503,0,0.269604531922708,0,0,0,0,0.242780379534093,0.789168805698781,0,0,0.252746318513952,0.150323419414493,0.207376382794494,0,0.330991955875499,0,0,0,0.554698692052555,0.867798691675654,0.0979923974143777,0.0870592065804026,1.22308667769421,0,0.0967563312890851,0.219267951258557,0.246346371159628,1.35784623083787,0.176512253383001,0,0.137041924646751,0.794858446811959,0,0,0.0801588202515337,1.28071796843612,2.39771531498556,0,0,0.343189995723929,0,0.248505071130865,0.942776138467182,0,0,0.203996435272644,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0.360299883542404,0,0.157566364614447,0.494495150286999,0.471824806979294,0.196854963029498,0,0,0.136203406111576,0.482259445395058,0.550157746388935,1.24632101408756,0.2249738915515,2.32140586367385,0,3.68978156359193,0.315222829196793,0.104909176269996,0.105600336519406,1.6135860539956,0.191915197319445,0,0,0,4.3439968140297,4.32110745600634,0.979762080328227,1.19730191562487,0.082092520749339,0.851940108927109,0.226624183040251,0.293104467356165,0,0,0.13223260174269,0,0,1.06787412567695,0.314408610199332,1.24271716604159,1.48849806543585,0,0.365377795142688,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0,0.276697269872462,0,0.151649117541648,0.570930667089935,0.235265819698172,0,0.144921028610825,0.447764408660622,0.467426619694449,0,0.378806010550178,1.25783950876288,0.889811221596536,2.28840068396924,1.05861646634267,0.15543720058278,0.591420599958536,0.477890301491107,1.34940933649081,0,0.414706207840855,0.53168342911599,1.5652351854352,0.601030435988874,2.28483127301277,0,0.545545977607678,0.429642228169954,0.928067519756987,1.19428766609585,0.400027764663154,1.03018711554838,1.01024846629776,0,0,1.07220795687463,0.260994291965212,0.453411851024545,0.231522474323834,0.489473409012935,1.25362188757041,0.617602894321944,1.09642024789354,0.530067437837643,0.771656153083659,1.35153952522458,0.256241518587947,0,1.82315973706429,0.138258436151731,0,0.132864840313363,0.327130788511688,1.96565909307848,1.2288645437686,0,0.19998739585493,0.426766918776564,0.172214979660816,0,0.184105950251841,0,1.24415452006595,0.127894371303652,0,0.157265941855896,0,0.169732529954025,0.637724760305049,0.123935764259002,0,0,0,0,0,2.7562092961788,0.0642292250964595,0,0,0.615349092722265,0.252071696221718,0.138314504928436,0.161475645631851,0,0.294443155503077,0,0.917142992608395,0.462102664601353,0,0,0.397832444232549,0.0752103283492573,0,0.781514011233092,0.523813388962845,0.818859587550484,0.147856086217045,0,0,0,0,0,0.548257766857182,0,0,1.02209942111676,0,0,0,0,0.354809480650555,0.230467975111559,0,0,0.0657727735628491,0.354581522651905,0.111231401892069,0.235479278551542,0,0,0,0,0,0,0,0.116241425368125,0,0,0.414432328326074,1.0243108625637,0,0,0.354996002191696,0.255640214277473,0,0,2.48165108531456,0,0.671132590786754,0.098150233615243,0.365753774946808,0,0.102662806856247,0,1.45713297917742,0,0.198950775161368,1.07028081699812,0.11294608203896,0,0,0.385870790539723,0.874238242015829,1.41095188908457,0.245148321753905,0.235676547101626,0,0,0,0.169927114687817,0.375935671919414,0.322289439867886,0.499705779624645,0,0,0.320965466756673,0,0.458729283404541,0,0,0,0.436350690340377,1.0580536810308,0.371995018166751,0.924351257262837,0.432626562123789,0,0,0,0,0,0.0918948995348449,0.250707539292375,0.151557396436479,0,0,0.103432995861895,1.0661699095049,0.476128862927481,0.129177819672012,0.124149428591716,0,0.12729431655633,0,0.653150243690884,0.342233301085281,0.0673520530145875,0.430333232356058,0.99798106963804,0.0814032686109745,0.533636729388577,0,0.0898252021065869,2.34640942403454,0.122241444182866,0,0,0.805095174364105,0.320568492303233 | |||
|short_description=p5@GRN | |||
}} |
Latest revision as of 21:09, 24 September 2015
Short description: | p5@GRN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_GRN_5end |
Coexpression cluster: | C143_Monocytederived_CD14_Macrophage_Dendritic_Basophils_CD14CD16_Osteoblast |
Association with transcript: | 16bp_to_uc002igr.1_5end |
EntrezGene: | GRN |
HGNC: | 4601 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 3.83e-37 | 48 |
phagocyte | 3.83e-37 | 48 |
macrophage dendritic cell progenitor | 1.14e-36 | 61 |
monopoietic cell | 1.88e-36 | 59 |
monocyte | 1.88e-36 | 59 |
monoblast | 1.88e-36 | 59 |
promonocyte | 1.88e-36 | 59 |
granulocyte monocyte progenitor cell | 5.38e-32 | 67 |
myeloid lineage restricted progenitor cell | 5.59e-31 | 66 |
classical monocyte | 1.58e-29 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.58e-29 | 42 |
myeloid leukocyte | 8.98e-29 | 72 |
myeloid cell | 3.71e-17 | 108 |
common myeloid progenitor | 3.71e-17 | 108 |
nongranular leukocyte | 1.88e-13 | 115 |
hematopoietic lineage restricted progenitor cell | 2.52e-12 | 120 |
leukocyte | 1.95e-11 | 136 |
macrophage | 1.62e-09 | 6 |
multi fate stem cell | 2.88e-09 | 427 |
somatic stem cell | 3.67e-09 | 433 |
connective tissue cell | 6.39e-09 | 361 |
mesenchymal cell | 1.10e-08 | 354 |
stem cell | 1.60e-08 | 441 |
hematopoietic cell | 3.24e-08 | 177 |
motile cell | 5.52e-08 | 386 |
hematopoietic stem cell | 8.04e-08 | 168 |
hematopoietic oligopotent progenitor cell | 1.28e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.28e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.01e-27 | 76 |
bone element | 1.44e-24 | 82 |
skeletal element | 3.38e-23 | 90 |
immune system | 3.84e-23 | 93 |
skeletal system | 2.69e-21 | 100 |
hematopoietic system | 2.26e-20 | 98 |
blood island | 2.26e-20 | 98 |
hemolymphoid system | 6.77e-20 | 108 |
lateral plate mesoderm | 1.27e-16 | 203 |
musculoskeletal system | 6.93e-15 | 167 |
mesoderm | 5.08e-12 | 315 |
mesoderm-derived structure | 5.08e-12 | 315 |
presumptive mesoderm | 5.08e-12 | 315 |
connective tissue | 4.46e-08 | 371 |