FFCP PHASE1:Hg19::chr9:126774058..126774081,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9355 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6594 | |||
|TSSclassifier=strong | |||
|UniProt=P50458,B3KNJ5 | |||
|association_with_transcript=169bp_to_ENST00000373615,NM_004789,uc004boe.1,uc010mwi.1_5end | |||
|cluster_id=chr9:126774058..126774081,+ | |||
|coexpression_cluster_id=C1198 | |||
|description=CAGE_peak_3_at_LHX2_5end | |||
|id=chr9:126774058..126774081,+ | |||
|ontology_enrichment_celltype=CL:0002319!8.85e-08!25 | |||
|ontology_enrichment_celltype_v019=CL:0002605;2.56e-09;3!CL:0002586;6.05e-09;3!CL:0002319;5.91e-08;25!CL:0000064;8.28e-08;3!CL:0000067;8.28e-08;3!CL:0005012;8.28e-08;3!CL:0002304;8.28e-08;3!CL:0000047;6.42e-07;2!CL:0000149;8.88e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,2.56e-09,3;CL:0002586,6.29e-09,3;CL:0000047,1.06e-08,8;CL:0002319,6.58e-08,25;CL:0000064,7.61e-08,3;CL:0000067,7.61e-08,3;CL:0005012,7.61e-08,3;CL:0002304,7.61e-08,3;CL:0000149,9.15e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0006601;6.42e-08;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003056!3.93e-44!61;UBERON:0001869!3.02e-43!32;UBERON:0001893!7.91e-43!34;UBERON:0002791!1.60e-41!33;UBERON:0002780!2.59e-40!41;UBERON:0001890!2.59e-40!41;UBERON:0006240!2.59e-40!41;UBERON:0000073!5.87e-40!94;UBERON:0001016!5.87e-40!94;UBERON:0005743!6.40e-40!86;UBERON:0002020!1.80e-39!34;UBERON:0003528!1.80e-39!34;UBERON:0003080!4.67e-39!42;UBERON:0001017!3.66e-35!82;UBERON:0000956!3.01e-34!25;UBERON:0000203!3.01e-34!25;UBERON:0003075!3.54e-33!86;UBERON:0007284!3.54e-33!86;UBERON:0000955!3.88e-31!69;UBERON:0006238!3.88e-31!69;UBERON:0002346!6.37e-31!90;UBERON:0002616!6.04e-30!59;UBERON:0002619!9.25e-30!22;UBERON:0001049!1.97e-28!57;UBERON:0005068!1.97e-28!57;UBERON:0006241!1.97e-28!57;UBERON:0007135!1.97e-28!57;UBERON:0001950!6.09e-27!20;UBERON:0004121!1.16e-25!169;UBERON:0000924!1.47e-24!173;UBERON:0006601!1.47e-24!173;UBERON:0000033!2.97e-23!123;UBERON:0000153!3.01e-22!129;UBERON:0007811!3.01e-22!129;UBERON:0007625!1.54e-12!11;UBERON:0007023!5.18e-11!115;UBERON:0002420!2.29e-10!9;UBERON:0007245!2.29e-10!9;UBERON:0010009!2.29e-10!9;UBERON:0010011!2.29e-10!9;UBERON:0000454!2.29e-10!9;UBERON:0001871!9.16e-10!7;UBERON:0000200!1.22e-09!6;UBERON:0000970!1.58e-08!20;UBERON:0000349!1.72e-08!5;UBERON:0002021!1.97e-08!5;UBERON:0000064!3.03e-08!219;UBERON:0001872!4.11e-08!5;UBERON:0002104!5.78e-08!21;UBERON:0009663!1.23e-07!7;UBERON:0000019!1.39e-07!19;UBERON:0000047!1.39e-07!19;UBERON:0004088!1.39e-07!19;UBERON:0003072!1.39e-07!19;UBERON:0003071!1.39e-07!19;UBERON:0004128!1.39e-07!19;UBERON:0002308!3.00e-07!9;UBERON:0000125!3.00e-07!9;UBERON:0000483!4.46e-07!309;UBERON:0000020!5.41e-07!23;UBERON:0000369!7.39e-07!4;UBERON:0002435!7.39e-07!4;UBERON:0000204!7.39e-07!4;UBERON:0010082!7.39e-07!4;UBERON:0000119!7.68e-07!312 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.22e-66;32!UBERON:0001893;1.89e-64;34!UBERON:0002791;6.05e-63;32!UBERON:0000956;3.02e-58;25!UBERON:0000203;3.02e-58;25!UBERON:0003528;2.19e-57;34!UBERON:0002020;2.19e-57;34!UBERON:0002619;1.75e-50;22!UBERON:0002780;1.13e-48;41!UBERON:0001890;1.13e-48;41!UBERON:0001950;1.36e-45;20!UBERON:0000073;5.86e-29;53!UBERON:0002616;5.86e-29;53!UBERON:0000955;2.64e-22;68!UBERON:0001017;7.47e-22;75!UBERON:0007625;3.44e-17;11!UBERON:0002420;5.28e-17;9!UBERON:0007245;5.28e-17;9!UBERON:0010009;5.28e-17;9!UBERON:0010011;5.28e-17;9!UBERON:0000454;5.28e-17;9!UBERON:0001016;6.69e-17;83!UBERON:0000200;1.91e-15;6!UBERON:0001871;1.01e-13;6!UBERON:0000349;1.82e-13;5!UBERON:0002021;2.28e-13;5!UBERON:0000970;5.57e-13;20!UBERON:0001872;8.47e-13;5!UBERON:0009663;2.61e-12;7!UBERON:0002104;3.05e-12;21!UBERON:0000019;2.19e-11;19!UBERON:0000047;2.19e-11;19!UBERON:0004088;2.19e-11;19!UBERON:0010230;2.19e-11;19!UBERON:0000020;5.82e-11;23!UBERON:0000369;1.18e-10;4!UBERON:0002435;1.18e-10;4!UBERON:0000204;1.18e-10;4!UBERON:0001032;2.11e-10;24!UBERON:0004456;2.11e-10;24!UBERON:0001456;4.27e-10;21!UBERON:0000488;9.01e-10;4!UBERON:0010371;9.99e-10;31!UBERON:0000125;2.09e-09;9!UBERON:0002308;2.09e-09;9!UBERON:0001781;6.05e-09;3!UBERON:0001782;6.05e-09;3!UBERON:0000966;6.59e-09;5!UBERON:0005388;6.59e-09;5!UBERON:0001802;6.59e-09;5!UBERON:0005383;1.55e-08;3!UBERON:0005382;1.55e-08;3!UBERON:0001870;1.59e-08;3!UBERON:0001778;8.28e-08;3!UBERON:0001775;8.28e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001869,7.60e-74,32;UBERON:0001893,1.70e-73,34;UBERON:0003056,1.89e-73,61;UBERON:0002791,3.96e-69,32;UBERON:0002780,4.02e-67,41;UBERON:0001890,4.02e-67,41;UBERON:0003080,4.02e-67,41;UBERON:0006240,4.02e-67,41;UBERON:0003528,1.25e-64,34;UBERON:0002020,1.25e-64,34;UBERON:0000956,2.81e-58,25;UBERON:0000203,2.81e-58,25;UBERON:0001017,1.98e-52,81;UBERON:0003075,1.43e-51,82;UBERON:0007284,1.43e-51,82;UBERON:0002619,1.63e-50,22;UBERON:0000073,7.38e-50,53;UBERON:0002616,7.38e-50,53;UBERON:0002346,1.32e-48,86;UBERON:0001049,1.11e-46,56;UBERON:0005068,1.11e-46,56;UBERON:0006241,1.11e-46,56;UBERON:0007135,1.11e-46,56;UBERON:0000955,3.39e-46,68;UBERON:0006238,3.39e-46,68;UBERON:0001016,4.98e-46,89;UBERON:0010371,6.31e-46,104;UBERON:0001950,1.22e-45,20;UBERON:0004121,3.78e-37,171;UBERON:0000924,3.78e-37,171;UBERON:0006601,3.78e-37,171;UBERON:0010314,5.71e-29,132;UBERON:0011216,2.56e-18,223;UBERON:0007625,3.06e-17,11;UBERON:0002420,5.07e-17,9;UBERON:0007245,5.07e-17,9;UBERON:0010009,5.07e-17,9;UBERON:0010011,5.07e-17,9;UBERON:0000454,5.07e-17,9;UBERON:0000200,1.99e-15,6;UBERON:0007023,2.62e-15,114;UBERON:0001871,9.77e-14,6;UBERON:0000349,1.86e-13,5;UBERON:0002021,2.35e-13,5;UBERON:0001872,8.27e-13,5;UBERON:0009663,2.53e-12,7;UBERON:0000970,2.86e-12,21;UBERON:0002104,2.86e-12,21;UBERON:0000483,5.89e-11,306;UBERON:0000019,9.76e-11,20;UBERON:0000047,9.76e-11,20;UBERON:0010312,9.76e-11,20;UBERON:0004088,9.76e-11,20;UBERON:0010230,9.76e-11,20;UBERON:0003072,9.76e-11,20;UBERON:0004128,9.76e-11,20;UBERON:0003071,9.76e-11,20;UBERON:0000119,1.01e-10,309;UBERON:0000369,1.15e-10,4;UBERON:0002435,1.15e-10,4;UBERON:0000204,1.15e-10,4;UBERON:0010082,1.15e-10,4;UBERON:0000020,2.00e-10,24;UBERON:0001032,2.00e-10,24;UBERON:0004456,2.00e-10,24;UBERON:0000488,8.20e-10,4;UBERON:0000025,9.35e-10,192;UBERON:0001456,1.45e-09,22;UBERON:0000125,2.04e-09,9;UBERON:0002308,2.04e-09,9;UBERON:0001782,6.29e-09,3;UBERON:0005424,6.29e-09,3;UBERON:0001870,1.51e-08,3;UBERON:0005383,1.51e-08,3;UBERON:0005382,1.51e-08,3;UBERON:0001778,7.61e-08,3;UBERON:0001775,7.61e-08,3;UBERON:0005085,1.87e-07,31;UBERON:0000966,2.15e-07,6;UBERON:0005388,2.15e-07,6;UBERON:0001802,2.15e-07,6;UBERON:0001781,9.15e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.3154512664702,19.8467916355682,25.6106984773398,1.22261449196722,1.47781061009902,1.18066171970519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,1.0843174571537,0,0.144846518960824,0,0,5.38848457835187,3.99112915432615,3.16205228495254,2.0956652079634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.348581828608555,1.55491582523056,0.252320850875628,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0.404493924480493,0.196221465125346,0,0,0,0,1.47008711385542,0,0,4.72631925345123,0,0,2.57351715447788,1.31700342490351,0,0,0,0,0,2.88662684050547,17.2736303412864,0.587043471179108,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42636905040718,0,0,0.179060963239896,0,0,0,0,47.0075054811557,33.8363620029816,12.3726210044431,12.3962036347418,18.5002237979417,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0.783204629850962,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.2595598841947,10.1684540166909,13.991270970565,0.721287081534056,0.366277859273374,0.577566499444116,0,1.30012049207304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,2.02965735142199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.921722292925374,0.671028323677248,0.667396566847634,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,15.9063623642608,12.2382392277146,0,0,0,0,0,0,0,0.246169610922139,0,0,0,0,0,0,0,15.5093239375235,7.4214478529481,29.9420697001791,0,0,0,0,0,1.41832609060762,0.689486746482929,0,3.12524990879926,11.5146380155799,7.35638275614988,0,0,0,7.02033270892712,0,0.139423744278603,0,0.227884111694002,0,0,0.325942115766024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0,0,0,0,0,3.03305098413047,0,2.10838001152805,0,0,0,0,0,22.3433115990258,0.189559738885464,0,0.103688191397247,0,0,0,0,0,0.138674673013139,0,0,0.0870592065804026,0,0,0.483781656445426,0.65780385377567,0.410577285266046,0,0.264768380074501,5.19755703795225,0,0,6.8375659632349,0.391102765469606,0,0,0,0.144090417154106,8.36117152011184,0,0,0,0,0.271808412147228,1.04602846312333,0,0,3.00210144354895,1.36905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.11683330164461,11.1332156573302,15.6633917028312,0,0,0,0,0,8.8694352720716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0.732761168390412,1.32506888912221,0,0.13223260174269,0.342173675768659,0,0,0,0,0,0,0,0,0,0,0,0,0,14.1770908794718,11.9585739603924,10.3908472486395,0,0,0,0,0,0,0,0,0.936669811613763,1.01444720027578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.617602894321944,0,0,0,0.337884881306145,1.28120759293973,0,0.911579868532147,13.1345514344144,0,0.265729680626726,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0,6.35869328454949,9.91876034279095,11.0147362749434,10.4609345762785,20.4178073939592,9.12875732527676,9.36558744664736,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,7.02390880031304,6.24862478891078,9.92096623205684,7.483065602881,15.8622694615284,0,0,0,0,0,0,0,0.227662191351298,0.0887023701626388,0,0,0.271878931907327,6.24841348847066,0.236387681767936,0,0,11.1552068840361,0,0,0.431855182437243,0.47775168788705,8.72013838955207,0,14.7626610217519,0.521574816907738,0,0,0,0,0,0.354996002191696,0.852134047591577,0,0,0,0,0,0,0,0,0,0,3.39997695141398,0,0,0.118920090777569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29923502702408,0,0,0,0,0,0,6.78417717430694,10.2667150188281,24.8719893494015,0,0,0,0,2.64949492153666,0,0.633492505057185,0,0,0,0,0,0,0,2.79269088827117,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0.332660356546013,0.244209805832924,0.213454691755431,0,0,0,0,0.406896178315738,0,0.201273793591026,0.320568492303233 | |||
|short_description=p3@LHX2 | |||
}} |
Latest revision as of 23:19, 24 September 2015
Short description: | p3@LHX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LHX2_5end |
Coexpression cluster: | C1198_Neural_parietal_occipital_Astrocyte_brain_duodenum_temporal |
Association with transcript: | 169bp_to_ENST00000373615, NM_004789, uc004boe.1, uc010mwi.1_5end |
EntrezGene: | LHX2 |
HGNC: | 6594 |
UniProt: | P50458B3KNJ5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 2.56e-09 | 3 |
retinal pigment epithelial cell | 6.29e-09 | 3 |
neuronal stem cell | 1.06e-08 | 8 |
neural cell | 6.58e-08 | 25 |
ciliated cell | 7.61e-08 | 3 |
ciliated epithelial cell | 7.61e-08 | 3 |
multi-ciliated epithelial cell | 7.61e-08 | 3 |
non-pigmented ciliary epithelial cell | 7.61e-08 | 3 |
visual pigment cell | 9.15e-07 | 4 |