FFCP PHASE1:Hg19::chr19:913160..913227,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:913160..913227,- to FFCP PHASE1:Hg19::chr19:913160..913227,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=91300 | |EntrezGene=91300 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28270 | |HGNC=28270 | ||
|TSSclassifier=strong | |||
|UniProt=Q96D70 | |UniProt=Q96D70 | ||
|association_with_transcript=0bp_to_ENST00000361574,NM_138774,uc002lqg.2,uc002lqh.2,uc002lqi.2,uc002lqj.2_5end | |||
|cluster_id=chr19:913160..913227,- | |||
|coexpression_cluster_id=C14 | |||
|description=CAGE_peak_1_at_R3HDM4_5end | |||
|id=chr19:913160..913227,- | |||
|ontology_enrichment_celltype=CL:0000988!5.32e-15!182;CL:0000037!3.84e-14!172;CL:0000566!3.84e-14!172;CL:0002032!1.24e-13!165;CL:0000837!1.24e-13!165;CL:0000738!3.57e-13!140;CL:0002031!7.39e-12!124;CL:0002087!2.87e-11!119;CL:0002057!9.78e-11!42;CL:0000838!8.04e-10!52;CL:0000542!2.32e-09!53;CL:0000051!2.32e-09!53;CL:0000860!1.10e-08!45;CL:0000791!1.88e-08!18;CL:0000789!1.88e-08!18;CL:0002420!1.88e-08!18;CL:0002419!1.88e-08!18;CL:0000790!1.88e-08!18;CL:0000084!7.15e-07!25;CL:0000827!7.15e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.12e-10;33!CL:0002057;1.12e-10;33!CL:0000791;1.86e-08;18!CL:0000789;1.86e-08;18!CL:0002419;1.86e-08;18!CL:0000084;7.16e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.22e-16,177;CL:0000037,2.62e-15,168;CL:0002032,8.40e-15,161;CL:0000837,8.40e-15,161;CL:0000738,1.95e-14,136;CL:0002031,3.98e-13,120;CL:0002087,1.59e-12,115;CL:0000860,9.78e-11,42;CL:0002057,9.78e-11,42;CL:0000838,8.04e-10,52;CL:0000542,2.32e-09,53;CL:0000051,2.32e-09,53;CL:0000791,1.88e-08,18;CL:0000789,1.88e-08,18;CL:0002420,1.88e-08,18;CL:0002419,1.88e-08,18;CL:0000790,1.88e-08,18;CL:0000473,3.91e-07,48;CL:0000234,3.91e-07,48;CL:0000084,7.15e-07,25;CL:0000827,7.15e-07,25;CL:0000763,7.91e-07,108;CL:0000049,7.91e-07,108 | |||
|ontology_enrichment_development_v019=CL:0000790;1.86e-08;18!CL:0002057;2.51e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.95e-09!112;UBERON:0003081!4.22e-08!216;UBERON:0002390!6.91e-08!102;UBERON:0003061!6.91e-08!102;UBERON:0000178!4.06e-07!15;UBERON:0000179!4.06e-07!15;UBERON:0000463!4.06e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.18e-07;15!UBERON:0000179;4.18e-07;15!UBERON:0000463;4.18e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.14e-10,108;UBERON:0002390,5.76e-09,98;UBERON:0003061,5.76e-09,98;UBERON:0003081,1.22e-07,203;UBERON:0000178,4.06e-07,15;UBERON:0000179,4.06e-07,15;UBERON:0000463,4.06e-07,15 | |||
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| ||
|short_description=p1@R3HDM4 | |||
}} | }} |
Latest revision as of 01:40, 25 September 2015
Short description: | p1@R3HDM4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_R3HDM4_5end |
Coexpression cluster: | C14_Whole_blood_Reticulocytes_liver_Neutrophils_Eosinophils_spleen |
Association with transcript: | 0bp_to_ENST00000361574, NM_138774, uc002lqg.2, uc002lqh.2, uc002lqi.2, uc002lqj.2_5end |
EntrezGene: | R3HDM4 |
HGNC: | 28270 |
UniProt: | Q96D70 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.22e-16 | 177 |
hematopoietic stem cell | 2.62e-15 | 168 |
hematopoietic oligopotent progenitor cell | 8.40e-15 | 161 |
hematopoietic multipotent progenitor cell | 8.40e-15 | 161 |
leukocyte | 1.95e-14 | 136 |
hematopoietic lineage restricted progenitor cell | 3.98e-13 | 120 |
nongranular leukocyte | 1.59e-12 | 115 |
classical monocyte | 9.78e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.78e-11 | 42 |
lymphoid lineage restricted progenitor cell | 8.04e-10 | 52 |
lymphocyte | 2.32e-09 | 53 |
common lymphoid progenitor | 2.32e-09 | 53 |
mature alpha-beta T cell | 1.88e-08 | 18 |
alpha-beta T cell | 1.88e-08 | 18 |
immature T cell | 1.88e-08 | 18 |
mature T cell | 1.88e-08 | 18 |
immature alpha-beta T cell | 1.88e-08 | 18 |
defensive cell | 3.91e-07 | 48 |
phagocyte | 3.91e-07 | 48 |
T cell | 7.15e-07 | 25 |
pro-T cell | 7.15e-07 | 25 |
myeloid cell | 7.91e-07 | 108 |
common myeloid progenitor | 7.91e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 2.14e-10 | 108 |
hematopoietic system | 5.76e-09 | 98 |
blood island | 5.76e-09 | 98 |
lateral plate mesoderm | 1.22e-07 | 203 |
blood | 4.06e-07 | 15 |
haemolymphatic fluid | 4.06e-07 | 15 |
organism substance | 4.06e-07 | 15 |