FFCP PHASE1:Mm9::chr3:55265789..55265883,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=13175 | |EntrezGene=13175 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2 | |MCL_coexpression_id=2 | ||
|TSSclassifier=NA | |||
|UniProt=Q9JLM6,Q8CCN4,A8IP62,Q8BQN2,Q1EDH1 | |UniProt=Q9JLM6,Q8CCN4,A8IP62,Q8BQN2,Q1EDH1 | ||
|association_with_transcript=109bp_to_ENSMUST00000070418,NM_001111051,NM_001111052,NM_001195539,NM_001195540,uc008pgn.2,uc008pgo.2,uc008pgp.2,uc008pgq.2,uc008pgr.2,uc012cpq.1,uc012cpr.1_5end | |association_with_transcript=109bp_to_ENSMUST00000070418,NM_001111051,NM_001111052,NM_001195539,NM_001195540,uc008pgn.2,uc008pgo.2,uc008pgp.2,uc008pgq.2,uc008pgr.2,uc012cpq.1,uc012cpr.1_5end | ||
|cluster_id=chr3:55265789..55265883,+ | |||
|description=CAGE_peak_2_at_Dclk1_5end | |description=CAGE_peak_2_at_Dclk1_5end | ||
|id=chr3:55265789..55265883,+ | |id=chr3:55265789..55265883,+ | ||
|ontology_enrichment_celltype=CL:0000221!6.33e-09!44;CL:0000133!6.33e-09!44;CL:0000117!6.98e-09!23;CL:0000337!6.98e-09!23;CL:0002319!9.21e-09!43;CL:0000540!1.57e-07!33;CL:0000047!1.57e-07!33;CL:0000031!1.57e-07!33;CL:0000404!1.57e-07!33 | |ontology_enrichment_celltype=CL:0000221!6.33e-09!44;CL:0000133!6.33e-09!44;CL:0000117!6.98e-09!23;CL:0000337!6.98e-09!23;CL:0002319!9.21e-09!43;CL:0000540!1.57e-07!33;CL:0000047!1.57e-07!33;CL:0000031!1.57e-07!33;CL:0000404!1.57e-07!33 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.39e-09,23;CL:0000337,1.39e-09,23;CL:0000221,1.18e-08,44;CL:0000133,1.18e-08,44;CL:0002319,1.81e-08,43;CL:0000540,7.51e-07,33;CL:0000047,7.51e-07,33;CL:0000031,7.51e-07,33;CL:0000404,7.51e-07,33 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.32e-26!75;UBERON:0001016!3.32e-26!75;UBERON:0001017!1.36e-25!73;UBERON:0005743!1.36e-25!73;UBERON:0004121!1.59e-24!102;UBERON:0000924!1.59e-24!102;UBERON:0006601!1.59e-24!102;UBERON:0001049!1.43e-22!52;UBERON:0005068!1.43e-22!52;UBERON:0006241!1.43e-22!52;UBERON:0007135!1.43e-22!52;UBERON:0002346!2.88e-22!71;UBERON:0003075!2.88e-22!71;UBERON:0007284!2.88e-22!71;UBERON:0000955!5.15e-22!50;UBERON:0006238!5.15e-22!50;UBERON:0002616!2.59e-21!49;UBERON:0000033!6.79e-21!63;UBERON:0003056!5.93e-18!49;UBERON:0003080!1.01e-17!40;UBERON:0002780!4.16e-17!39;UBERON:0001890!4.16e-17!39;UBERON:0006240!4.16e-17!39;UBERON:0002020!3.01e-16!34;UBERON:0002791!6.04e-14!29;UBERON:0003528!6.04e-14!29;UBERON:0001893!6.04e-14!29;UBERON:0000153!1.56e-11!94;UBERON:0002619!2.56e-10!17;UBERON:0000956!3.36e-10!21;UBERON:0001869!3.36e-10!21;UBERON:0000203!3.36e-10!21;UBERON:0007811!3.94e-10!86;UBERON:0002021!2.16e-08!10;UBERON:0000411!2.16e-08!10;UBERON:0001950!2.16e-08!10 | |ontology_enrichment_uberon=UBERON:0000073!3.32e-26!75;UBERON:0001016!3.32e-26!75;UBERON:0001017!1.36e-25!73;UBERON:0005743!1.36e-25!73;UBERON:0004121!1.59e-24!102;UBERON:0000924!1.59e-24!102;UBERON:0006601!1.59e-24!102;UBERON:0001049!1.43e-22!52;UBERON:0005068!1.43e-22!52;UBERON:0006241!1.43e-22!52;UBERON:0007135!1.43e-22!52;UBERON:0002346!2.88e-22!71;UBERON:0003075!2.88e-22!71;UBERON:0007284!2.88e-22!71;UBERON:0000955!5.15e-22!50;UBERON:0006238!5.15e-22!50;UBERON:0002616!2.59e-21!49;UBERON:0000033!6.79e-21!63;UBERON:0003056!5.93e-18!49;UBERON:0003080!1.01e-17!40;UBERON:0002780!4.16e-17!39;UBERON:0001890!4.16e-17!39;UBERON:0006240!4.16e-17!39;UBERON:0002020!3.01e-16!34;UBERON:0002791!6.04e-14!29;UBERON:0003528!6.04e-14!29;UBERON:0001893!6.04e-14!29;UBERON:0000153!1.56e-11!94;UBERON:0002619!2.56e-10!17;UBERON:0000956!3.36e-10!21;UBERON:0001869!3.36e-10!21;UBERON:0000203!3.36e-10!21;UBERON:0007811!3.94e-10!86;UBERON:0002021!2.16e-08!10;UBERON:0000411!2.16e-08!10;UBERON:0001950!2.16e-08!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.86e-27,75;UBERON:0001017,2.95e-26,73;UBERON:0000073,5.66e-26,54;UBERON:0002346,3.14e-25,64;UBERON:0003075,3.14e-25,64;UBERON:0007284,3.14e-25,64;UBERON:0004121,3.34e-25,95;UBERON:0000924,3.34e-25,95;UBERON:0006601,3.34e-25,95;UBERON:0001049,1.63e-24,52;UBERON:0005068,1.63e-24,52;UBERON:0006241,1.63e-24,52;UBERON:0007135,1.63e-24,52;UBERON:0010371,3.96e-24,73;UBERON:0000955,1.10e-21,47;UBERON:0006238,1.10e-21,47;UBERON:0002616,6.70e-21,46;UBERON:0003056,4.83e-19,49;UBERON:0003080,1.20e-18,40;UBERON:0002020,4.82e-18,34;UBERON:0002780,6.01e-18,39;UBERON:0001890,6.01e-18,39;UBERON:0006240,6.01e-18,39;UBERON:0003528,2.23e-15,29;UBERON:0002791,2.23e-15,29;UBERON:0001893,2.23e-15,29;UBERON:0010314,3.18e-13,92;UBERON:0002619,1.00e-11,17;UBERON:0000956,4.78e-11,21;UBERON:0001869,4.78e-11,21;UBERON:0000203,4.78e-11,21;UBERON:0002021,1.72e-09,10;UBERON:0000411,1.72e-09,10;UBERON:0001950,1.72e-09,10 | |||
|phase1_expression=4.48416771893423,0,0,0,0,0,0,0,0.140788722151667,0,2.56826952338257,0.0797721589953364,0,0,0,0,0,0,0,0,59.0200433648424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0.101376931219515,0.734187008646726,0,4.14247797122848,5.27246838562732,8.55491555926847,3.63964696225943,1.43752564364972,0,0.725362142011344,0,0.514518872071894,0.286533439938757,0,9.5088736604011,15.869729378161,7.60597684207415,0,1.77858959222228,0,0,0,5.69240209984969,4.99483796918021,1.45165457231869,1.75507719831198,0.420649922702764,12.5686433137674,15.9025349485162,4.16468717330844,5.17565543498476,5.51531271966013,59.4625757396699,72.6540953704718,60.6745806362162,5.93488294785872,10.6125666578795,4.68822033501084,46.902743832232,59.0900740533264,56.8409481729734,14.7314292736834,18.5083185038834,5.96478226640962,3.86203585999239,6.65029728939713,0,0,0,0,0,0,12.4995533917259,0.852151612890289,0.259786004602869,1.06001872353102,3.66192891419369,2.56652954828636,0,7.11066703153331,0,0.760079596425296,0,6.62266502370548,0.258937883647172,0.742210695324124,1.04091196059682,0.304465478312141,0.691846491768175,2.11011696773672,2.23418543557839,1.0053327306374,0,0.144599356919912,0,0.808834249737046,0,0,1.86391761218122,194.113668418656,171.955746293847,0.766371165625774,0,0,0,69.5028566838377,378.810499133823,38.4502317465365,418.568963023002,450.826351273373,102.231717923304,221.946047876692,2.54598409625791,0.124406970610093,0,3.15662783829711,1.56144531555244,1.60931473103431,2.52086981727489,2.71268672104287,2.17716797284249,1.5373646434182,1.3118241438362,9.05461797586555,3.01795190105979,3.02569728268511,4.22282697993477,2.41115305670332,6.39508673218875,4.52727816478817,9.26019613835746,0.199034266818493,0,0,0,0.207125772535502,0,0.180062061461015,0,0,0,0,0,0,0.16455984991348,0.164167464079095,0.0810688095458557,0.146199987425332,0,0,242.254020745875,25.5203438700625,0.330418782983798,1.58670339998127,0.426576501070468,0.928946687441754,0.515469845288373,0.403367049246685,0.667134131534611,1.33157938278791,0.474529061544512,1.31759163779209,4.52403375840485,3.97912944082302,2.72949721966768,1.79763881730844,2.37751854862164,1.59313018603494,0,0.342745537829186,0,0.203651327845314,0.193952487167626,0.0701358198903186,0,0,0,0.123397163921801,0,0,0,0,0.202860121388503,0,0,0,0.162135226775035,0,0,0.744281895337007,0.312037673114561,0,0,0,0.184753190166605,0.37898282354097,0.325929952884052,0,0,0,0,0,0.315270288212382,0.221464689648775,0.159454768657487,0.163863314715738,0,0,0,0,0,0.275936746304732,95.3670504527484,90.4874220491809,2.45902418065013,0,1.89304931649754,1.95219372148319,2.80050417052639,0.477937595905104,0.891194696329576,0.283076530788832,1.21443210502468,0.584511715822624,0,330.318313281618,9.22610553853746,1.06839362200353,2.44330439030364,13.3625799607754,0,0.242780636154981,1.209294227859,0.188605079755898,0,0.307435147943927,0.516856586336442,0,1.78248689192361,2.21225730555071,0,0,48.6828636227917,0.720244376125241,0.388076051348264,2.57204442037911,13.1231772895282,11.0588666913284,11.8475294833527,16.745572201303,0.23467170806371,0,0,0.8244312647074,29.8709189387425,10.4944489374991,2.74556391207214,0.492422699235184,2.33184669303881,96.7920076494861,0,0.412773735926445,0.185194527369712,0,0,0,0.339956859987711,0.559805809294632,0.276399947608848,0,0.158167996790568,0.406638934253697,0.108005340821801,0.418176592028937,1.09181281873089,1.75323650300267,2.39695021603474,0.26175594198403,1.42576470620972,0,0,0.299033092087958,0.330916980914195,1.55560950675238,1.6790777052105,3.37912250981556,1.29092962510329,0.39061315453185,0.104859344425711,0,0,0,0,0.102710957164827,0,0,0.198681354781265,0,0,0,0,0,0.0974578807397524,0,0,0,0,0.538283139656854,0.335769232728157,0.19318959403219,33.5951631057616,39.1944475931947,5.57357785605571,0,452.930977778887,508.199061103923,462.899574859032,481.188910562325,411.734594382156,336.905678235806,346.286542618916,391.329125601848,523.83262478574,381.071589449339,3.21740777510948,5.1873233542134,3.58540572083682,7.05009479498053,3.5634237646757,4.22840069435032,4.66718128383392,5.76898160268904,8.98573786857083,6.31743029409494,5.57654459758527,6.97917463128482,6.9294715527713,6.91471645972588,7.00712721258482,7.1444053692461,7.18482820858104,3.8581844092741,2.47251540481984,6.62395140604788,6.85738504770831,7.63145966485151,7.62995807831427,7.41266724824875,7.34053167239579,7.36147088657586,6.0366231048015,8.41823076601097,7.87663860305998,3.92799590160417,5.57584585183618,5.91026894253381,3.6830793885272,4.33823155320705,6.17301155139652,9.74261253957989,6.78401664491684,7.73535794573874,3.82576664137687,1.76473135295612,2.55054619182464 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|phase1_expression=4.48416771893423,0,0,0,0,0,0,0,0.140788722151667,0,2.56826952338257,0.0797721589953364,0,0,0,0,0,0,0,0,59.0200433648424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0.101376931219515,0.734187008646726,0,4.14247797122848,5.27246838562732,8.55491555926847,3.63964696225943,1.43752564364972,0,0.725362142011344,0,0.514518872071894,0.286533439938757,0,9.5088736604011,15.869729378161,7.60597684207415,0,1.77858959222228,0,0,0,5.69240209984969,4.99483796918021,1.45165457231869,1.75507719831198,0.420649922702764,12.5686433137674,15.9025349485162,4.16468717330844,5.17565543498476,5.51531271966013,59.4625757396699,72.6540953704718,60.6745806362162,5.93488294785872,10.6125666578795,4.68822033501084,46.902743832232,59.0900740533264,56.8409481729734,14.7314292736834,18.5083185038834,5.96478226640962,3.86203585999239,6.65029728939713,0,0,0,0,0,0,12.4995533917259,0.852151612890289,0.259786004602869,1.06001872353102,3.66192891419369,2.56652954828636,0,7.11066703153331,0,0.760079596425296,0,6.62266502370548,0.258937883647172,0.742210695324124,1.04091196059682,0.304465478312141,0.691846491768175,2.11011696773672,2.23418543557839,1.0053327306374,0,0.144599356919912,0,0.808834249737046,0,0,1.86391761218122,194.113668418656,171.955746293847,0.766371165625774,0,0,0,69.5028566838377,378.810499133823,38.4502317465365,418.568963023002,450.826351273373,102.231717923304,221.946047876692,2.54598409625791,0.124406970610093,0,3.15662783829711,1.56144531555244,1.60931473103431,2.52086981727489,2.71268672104287,2.17716797284249,1.5373646434182,1.3118241438362,9.05461797586555,3.01795190105979,3.02569728268511,4.22282697993477,2.41115305670332,6.39508673218875,4.52727816478817,9.26019613835746,0.199034266818493,0,0,0,0.207125772535502,0,0.180062061461015,0,0,0,0,0,0,0.16455984991348,0.164167464079095,0.0810688095458557,0.146199987425332,0,0,242.254020745875,25.5203438700625,0.330418782983798,1.58670339998127,0.426576501070468,0.928946687441754,0.515469845288373,0.403367049246685,0.667134131534611,1.33157938278791,0.474529061544512,1.31759163779209,4.52403375840485,3.97912944082302,2.72949721966768,1.79763881730844,2.37751854862164,1.59313018603494,0,0.342745537829186,0,0.203651327845314,0.193952487167626,0.0701358198903186,0,0,0,0.123397163921801,0,0,0,0,0.202860121388503,0,0,0,0.162135226775035,0,0,0.744281895337007,0.312037673114561,0,0,0,0.184753190166605,0.37898282354097,0.325929952884052,0,0,0,0,0,0.315270288212382,0.221464689648775,0.159454768657487,0.163863314715738,0,0,0,0,0,0.275936746304732,95.3670504527484,90.4874220491809,2.45902418065013,0,1.89304931649754,1.95219372148319,2.80050417052639,0.477937595905104,0.891194696329576,0.283076530788832,1.21443210502468,0.584511715822624,0,330.318313281618,9.22610553853746,1.06839362200353,2.44330439030364,13.3625799607754,0,0.242780636154981,1.209294227859,0.188605079755898,0,0.307435147943927,0.516856586336442,0,1.78248689192361,2.21225730555071,0,0,48.6828636227917,0.720244376125241,0.388076051348264,2.57204442037911,13.1231772895282,11.0588666913284,11.8475294833527,16.745572201303,0.23467170806371,0,0,0.8244312647074,29.8709189387425,10.4944489374991,2.74556391207214,0.492422699235184,2.33184669303881,96.7920076494861,0,0.412773735926445,0.185194527369712,0,0,0,0.339956859987711,0.559805809294632,0.276399947608848,0,0.158167996790568,0.406638934253697,0.108005340821801,0.418176592028937,1.09181281873089,1.75323650300267,2.39695021603474,0.26175594198403,1.42576470620972,0,0,0.299033092087958,0.330916980914195,1.55560950675238,1.6790777052105,3.37912250981556,1.29092962510329,0.39061315453185,0.104859344425711,0,0,0,0,0.102710957164827,0,0,0.198681354781265,0,0,0,0,0,0.0974578807397524,0,0,0,0,0.538283139656854,0.335769232728157,0.19318959403219,33.5951631057616,39.1944475931947,5.57357785605571,0,452.930977778887,508.199061103923,462.899574859032,481.188910562325,411.734594382156,336.905678235806,346.286542618916,391.329125601848,523.83262478574,381.071589449339,3.21740777510948,5.1873233542134,3.58540572083682,7.05009479498053,3.5634237646757,4.22840069435032,4.66718128383392,5.76898160268904,8.98573786857083,6.31743029409494,5.57654459758527,6.97917463128482,6.9294715527713,6.91471645972588,7.00712721258482,7.1444053692461,7.18482820858104,3.8581844092741,2.47251540481984,6.62395140604788,6.85738504770831,7.63145966485151,7.62995807831427,7.41266724824875,7.34053167239579,7.36147088657586,6.0366231048015,8.41823076601097,7.87663860305998,3.92799590160417,5.57584585183618,5.91026894253381,3.6830793885272,4.33823155320705,6.17301155139652,9.74261253957989,6.78401664491684,7.73535794573874,3.82576664137687,1.76473135295612,2.55054619182464 | ||
|short_description=p2@Dclk1 | |short_description=p2@Dclk1 | ||
}} | }} |
Latest revision as of 14:33, 25 September 2015
Short description: | p2@Dclk1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Dclk1_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 109bp_to_ENSMUST00000070418, NM_001111051, NM_001111052, NM_001195539, NM_001195540, uc008pgn.2, uc008pgo.2, uc008pgp.2, uc008pgq.2, uc008pgr.2, uc012cpq.1, uc012cpr.1_5end |
EntrezGene: | Dclk1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.39e-09 | 23 |
neuroblast (sensu Vertebrata) | 1.39e-09 | 23 |
ectodermal cell | 1.18e-08 | 44 |
neurectodermal cell | 1.18e-08 | 44 |
neural cell | 1.81e-08 | 43 |
neuron | 7.51e-07 | 33 |
neuronal stem cell | 7.51e-07 | 33 |
neuroblast | 7.51e-07 | 33 |
electrically signaling cell | 7.51e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
nervous system | 5.86e-27 | 75 |
central nervous system | 2.95e-26 | 73 |
regional part of nervous system | 5.66e-26 | 54 |
neurectoderm | 3.14e-25 | 64 |
neural plate | 3.14e-25 | 64 |
presumptive neural plate | 3.14e-25 | 64 |
ectoderm-derived structure | 3.34e-25 | 95 |
ectoderm | 3.34e-25 | 95 |
presumptive ectoderm | 3.34e-25 | 95 |
neural tube | 1.63e-24 | 52 |
neural rod | 1.63e-24 | 52 |
future spinal cord | 1.63e-24 | 52 |
neural keel | 1.63e-24 | 52 |
ecto-epithelium | 3.96e-24 | 73 |
brain | 1.10e-21 | 47 |
future brain | 1.10e-21 | 47 |
regional part of brain | 6.70e-21 | 46 |
pre-chordal neural plate | 4.83e-19 | 49 |
anterior neural tube | 1.20e-18 | 40 |
gray matter | 4.82e-18 | 34 |
regional part of forebrain | 6.01e-18 | 39 |
forebrain | 6.01e-18 | 39 |
future forebrain | 6.01e-18 | 39 |
brain grey matter | 2.23e-15 | 29 |
regional part of telencephalon | 2.23e-15 | 29 |
telencephalon | 2.23e-15 | 29 |
structure with developmental contribution from neural crest | 3.18e-13 | 92 |
regional part of cerebral cortex | 1.00e-11 | 17 |
cerebral cortex | 4.78e-11 | 21 |
cerebral hemisphere | 4.78e-11 | 21 |
pallium | 4.78e-11 | 21 |
occipital lobe | 1.72e-09 | 10 |
visual cortex | 1.72e-09 | 10 |
neocortex | 1.72e-09 | 10 |