FFCP PHASE1:Mm9::chr8:73132160..73132229,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=76900 | |EntrezGene=76900 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=247 | |MCL_coexpression_id=247 | ||
|TSSclassifier=NA | |||
|UniProt=Q3U4B1 | |UniProt=Q3U4B1 | ||
|association_with_transcript=0bp_to_ENSMUST00000049908,NM_133772,uc009max.2_5end | |association_with_transcript=0bp_to_ENSMUST00000049908,NM_133772,uc009max.2_5end | ||
|cluster_id=chr8:73132160..73132229,- | |||
|description=CAGE_peak_1_at_Ssbp4_5end | |description=CAGE_peak_1_at_Ssbp4_5end | ||
|id=chr8:73132160..73132229,- | |id=chr8:73132160..73132229,- | ||
|ontology_enrichment_celltype=CL:0002319!1.13e-12!43;CL:0000221!5.59e-12!44;CL:0000133!5.59e-12!44;CL:0000055!8.61e-12!50;CL:0000540!1.32e-09!33;CL:0000047!1.32e-09!33;CL:0000031!1.32e-09!33;CL:0000404!1.32e-09!33;CL:0000393!1.82e-09!39;CL:0000211!1.82e-09!39;CL:0000723!2.55e-08!91;CL:0000048!2.55e-08!91;CL:0000117!4.98e-08!23;CL:0000337!4.98e-08!23;CL:0000034!7.17e-08!97 | |ontology_enrichment_celltype=CL:0002319!1.13e-12!43;CL:0000221!5.59e-12!44;CL:0000133!5.59e-12!44;CL:0000055!8.61e-12!50;CL:0000540!1.32e-09!33;CL:0000047!1.32e-09!33;CL:0000031!1.32e-09!33;CL:0000404!1.32e-09!33;CL:0000393!1.82e-09!39;CL:0000211!1.82e-09!39;CL:0000723!2.55e-08!91;CL:0000048!2.55e-08!91;CL:0000117!4.98e-08!23;CL:0000337!4.98e-08!23;CL:0000034!7.17e-08!97 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.13e-12,43;CL:0000221,5.59e-12,44;CL:0000133,5.59e-12,44;CL:0000540,1.32e-09,33;CL:0000047,1.32e-09,33;CL:0000031,1.32e-09,33;CL:0000404,1.32e-09,33;CL:0000393,1.82e-09,39;CL:0000211,1.82e-09,39;CL:0000723,2.55e-08,91;CL:0000048,2.55e-08,91;CL:0000117,4.98e-08,23;CL:0000337,4.98e-08,23;CL:0000034,7.17e-08,97 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.37e-25!73;UBERON:0005743!9.37e-25!73;UBERON:0000073!1.33e-23!75;UBERON:0001016!1.33e-23!75;UBERON:0004121!2.35e-18!102;UBERON:0000924!2.35e-18!102;UBERON:0006601!2.35e-18!102;UBERON:0002346!1.58e-17!71;UBERON:0003075!1.58e-17!71;UBERON:0007284!1.58e-17!71;UBERON:0001049!1.67e-16!52;UBERON:0005068!1.67e-16!52;UBERON:0006241!1.67e-16!52;UBERON:0007135!1.67e-16!52;UBERON:0007811!6.31e-16!86;UBERON:0000955!8.10e-16!50;UBERON:0006238!8.10e-16!50;UBERON:0000153!8.47e-16!94;UBERON:0002616!2.58e-15!49;UBERON:0000033!8.75e-14!63;UBERON:0002020!1.71e-13!34;UBERON:0003080!2.42e-12!40;UBERON:0003056!3.98e-12!49;UBERON:0002780!7.19e-12!39;UBERON:0001890!7.19e-12!39;UBERON:0006240!7.19e-12!39;UBERON:0002791!5.50e-11!29;UBERON:0003528!5.50e-11!29;UBERON:0001893!5.50e-11!29;UBERON:0000475!8.87e-08!200;UBERON:0002619!2.68e-07!17;UBERON:0000956!6.37e-07!21;UBERON:0001869!6.37e-07!21;UBERON:0000203!6.37e-07!21 | |ontology_enrichment_uberon=UBERON:0001017!9.37e-25!73;UBERON:0005743!9.37e-25!73;UBERON:0000073!1.33e-23!75;UBERON:0001016!1.33e-23!75;UBERON:0004121!2.35e-18!102;UBERON:0000924!2.35e-18!102;UBERON:0006601!2.35e-18!102;UBERON:0002346!1.58e-17!71;UBERON:0003075!1.58e-17!71;UBERON:0007284!1.58e-17!71;UBERON:0001049!1.67e-16!52;UBERON:0005068!1.67e-16!52;UBERON:0006241!1.67e-16!52;UBERON:0007135!1.67e-16!52;UBERON:0007811!6.31e-16!86;UBERON:0000955!8.10e-16!50;UBERON:0006238!8.10e-16!50;UBERON:0000153!8.47e-16!94;UBERON:0002616!2.58e-15!49;UBERON:0000033!8.75e-14!63;UBERON:0002020!1.71e-13!34;UBERON:0003080!2.42e-12!40;UBERON:0003056!3.98e-12!49;UBERON:0002780!7.19e-12!39;UBERON:0001890!7.19e-12!39;UBERON:0006240!7.19e-12!39;UBERON:0002791!5.50e-11!29;UBERON:0003528!5.50e-11!29;UBERON:0001893!5.50e-11!29;UBERON:0000475!8.87e-08!200;UBERON:0002619!2.68e-07!17;UBERON:0000956!6.37e-07!21;UBERON:0001869!6.37e-07!21;UBERON:0000203!6.37e-07!21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.37e-25,73;UBERON:0001016,1.33e-23,75;UBERON:0000073,6.18e-18,54;UBERON:0004121,2.48e-17,95;UBERON:0000924,2.48e-17,95;UBERON:0006601,2.48e-17,95;UBERON:0002346,8.64e-17,64;UBERON:0003075,8.64e-17,64;UBERON:0007284,8.64e-17,64;UBERON:0001049,1.67e-16,52;UBERON:0005068,1.67e-16,52;UBERON:0006241,1.67e-16,52;UBERON:0007135,1.67e-16,52;UBERON:0000955,2.01e-14,47;UBERON:0006238,2.01e-14,47;UBERON:0002616,6.23e-14,46;UBERON:0002020,1.71e-13,34;UBERON:0010371,2.71e-13,73;UBERON:0003080,2.42e-12,40;UBERON:0003056,3.98e-12,49;UBERON:0002780,7.19e-12,39;UBERON:0001890,7.19e-12,39;UBERON:0006240,7.19e-12,39;UBERON:0003528,5.50e-11,29;UBERON:0002791,5.50e-11,29;UBERON:0001893,5.50e-11,29;UBERON:0010314,3.15e-10,92;UBERON:0002619,2.68e-07,17;UBERON:0000956,6.37e-07,21;UBERON:0001869,6.37e-07,21;UBERON:0000203,6.37e-07,21 | |||
|phase1_expression=46.7634633545998,4.88565570695105,2.72999543633722,3.32710632437513,2.50447864973174,21.9921846204576,15.6520469199002,30.2148576853288,95.3139648966784,50.7920022118726,66.4325716714959,49.6182828950992,44.3409890521823,41.9617931611187,29.646768801594,29.9663395736942,21.6864182219725,20.6627718309646,20.0187073064379,18.2487550273153,45.4131169406713,20.751808800985,14.6271881917804,12.1594241322989,17.2056960800378,6.31655160526522,10.3382879078178,13.3592164265251,13.6816862008589,11.089325709437,18.8470934057009,69.2183434070998,91.0295885625164,31.6963362030877,25.4189425381122,34.0781022984909,24.7044921077467,43.5272895966384,63.2881629064278,44.4995182377729,25.8821854733646,28.6879103682547,30.1016418879315,25.1793635951155,30.5144562970739,36.7093504323363,118.141092996554,60.1749431610032,68.7617751958897,51.7183531537594,58.5143242394015,99.1892694118304,17.4493910300046,27.5637613964311,40.6673496962381,37.8171370972842,54.154820148425,40.2224231976405,61.9088370230369,64.536899471188,70.9891171926921,73.8681079910708,64.029225320002,196.628088225986,179.973677987189,231.616517472429,144.407253269871,195.18289910335,30.8995044679263,32.9414489529325,29.4454945891935,94.550475837659,72.2240128911776,28.7853378155142,34.7919059796198,38.6071890376209,55.0579404996944,67.6742891851495,62.8250721018036,61.4590100822703,73.922016030747,61.4677777256977,69.7957497503452,77.6612401843718,79.1494923483876,60.9881171930492,64.7791147635918,60.9526187848733,15.7510482133023,33.7804873677331,31.8850937571846,19.7897491705719,1.3599426674155,2.15881276655127,2.59910566979068,1.79210754838934,19.5217743983135,23.68981483835,23.6405264188611,22.2603931941514,22.5349471642689,30.7983545794363,66.2493623237279,120.881339536066,19.4841936910093,22.8023878927589,19.7154533555765,15.8715592809493,24.8580368301285,53.1422857852073,40.5955664632758,34.1001335709598,42.2026359978587,29.8430828294193,32.3368944623188,48.3816376619251,15.8204779349999,26.0278842455841,41.5766959416441,28.3091987407966,28.2677143629304,19.8798853785441,11.1835056730873,35.1336956413857,41.2610012422507,23.5020490791904,38.4606549664004,32.9946502046374,34.3089613097275,65.1589281410979,81.4351073017155,63.8324108733351,67.9653091951801,71.3446125951622,64.8298699025827,67.1678829100517,47.1516254626964,32.4702193292343,54.8408385801074,49.4538361333214,32.2698698547505,41.6122809024586,40.5139792062036,37.2240900054216,38.3045490221976,29.9786105466548,32.5144984222259,26.9051505568576,45.053710522964,30.4460789070189,34.6623714602979,43.6199507530874,26.6925359256574,34.4769644856945,34.5713989165345,46.5740184355274,41.4305780514809,46.065275373534,38.6462359178006,21.3339545711567,22.2799756982041,23.768192112854,20.1233025247429,23.2181793461937,19.4376562238097,20.6955210827863,23.3397859217669,24.1704258700041,24.6839774870221,19.5359282254123,26.99591357877,23.5381979754785,21.735461413814,28.1833479396781,66.2413337977001,40.6473218898173,5.61711931072457,17.982638533121,33.9128318351022,26.9394539358109,22.1652033474001,24.6053900040478,22.6825604721768,19.7834651157062,23.2519240156811,18.1168850196412,20.6094871216221,28.0528625578023,23.7856186285327,32.357498711552,19.0201483889731,21.3081162382173,48.3653147430358,36.4452755225035,32.6852433451933,30.3440478489518,40.1481648436985,43.6946157916685,35.2859877153356,32.9170629994513,24.6488002710958,28.3813477020141,3.85388415213294,32.0342602974901,31.8425572083389,33.2795926329584,22.1117532313468,20.9824128984603,17.3145579211365,23.8787794084173,18.9698215326791,15.1008777253445,21.5652309791032,30.5155577088173,15.601883655728,14.3969960429854,6.99649912735457,11.5786445127208,32.8860678496556,40.3616707071133,25.5855013013981,26.4802333809293,31.6831835189478,30.3186325969687,35.23045885113,40.9780660501378,37.5171642972735,42.5212204125648,42.893332768864,33.2642528872948,37.990696010497,37.1748080554485,58.8086007363162,56.0222854333271,29.5058563811422,27.869611376778,40.6192992669114,44.0715941586684,24.4263068611246,19.1877904675323,40.3850520852809,35.1394869866975,45.023490126155,48.7496347823206,47.9017149277147,42.178403087536,43.7195557808886,37.1164939547366,33.994748903401,66.1921911828922,34.0656204499845,63.7474861128774,50.332070440255,44.047022833667,26.5490276679926,34.2320696978524,38.6974152914881,20.369348613637,30.4160949667196,31.9732553861685,24.8091161441492,41.4428451604356,28.8762876491624,16.7499481705982,12.6502330289999,18.5643977846736,25.8734100372879,32.5910580196672,43.5938764347883,35.5799478152443,34.5813455602433,39.0627710548535,37.6817257178857,55.4126207388571,17.1310346886509,29.8683219917986,9.04166432025344,22.4245304000413,29.063596805263,23.1601631724118,25.5456816166712,18.5479216711919,17.7803310344209,35.4162326840073,32.465467351592,48.5009139713573,30.5570970160024,27.5017947226849,36.3606645737927,26.3094899187501,36.8853193086666,34.4280572716199,33.1679937130617,43.9148484286952,40.3328391815948,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|phase1_expression=46.7634633545998,4.88565570695105,2.72999543633722,3.32710632437513,2.50447864973174,21.9921846204576,15.6520469199002,30.2148576853288,95.3139648966784,50.7920022118726,66.4325716714959,49.6182828950992,44.3409890521823,41.9617931611187,29.646768801594,29.9663395736942,21.6864182219725,20.6627718309646,20.0187073064379,18.2487550273153,45.4131169406713,20.751808800985,14.6271881917804,12.1594241322989,17.2056960800378,6.31655160526522,10.3382879078178,13.3592164265251,13.6816862008589,11.089325709437,18.8470934057009,69.2183434070998,91.0295885625164,31.6963362030877,25.4189425381122,34.0781022984909,24.7044921077467,43.5272895966384,63.2881629064278,44.4995182377729,25.8821854733646,28.6879103682547,30.1016418879315,25.1793635951155,30.5144562970739,36.7093504323363,118.141092996554,60.1749431610032,68.7617751958897,51.7183531537594,58.5143242394015,99.1892694118304,17.4493910300046,27.5637613964311,40.6673496962381,37.8171370972842,54.154820148425,40.2224231976405,61.9088370230369,64.536899471188,70.9891171926921,73.8681079910708,64.029225320002,196.628088225986,179.973677987189,231.616517472429,144.407253269871,195.18289910335,30.8995044679263,32.9414489529325,29.4454945891935,94.550475837659,72.2240128911776,28.7853378155142,34.7919059796198,38.6071890376209,55.0579404996944,67.6742891851495,62.8250721018036,61.4590100822703,73.922016030747,61.4677777256977,69.7957497503452,77.6612401843718,79.1494923483876,60.9881171930492,64.7791147635918,60.9526187848733,15.7510482133023,33.7804873677331,31.8850937571846,19.7897491705719,1.3599426674155,2.15881276655127,2.59910566979068,1.79210754838934,19.5217743983135,23.68981483835,23.6405264188611,22.2603931941514,22.5349471642689,30.7983545794363,66.2493623237279,120.881339536066,19.4841936910093,22.8023878927589,19.7154533555765,15.8715592809493,24.8580368301285,53.1422857852073,40.5955664632758,34.1001335709598,42.2026359978587,29.8430828294193,32.3368944623188,48.3816376619251,15.8204779349999,26.0278842455841,41.5766959416441,28.3091987407966,28.2677143629304,19.8798853785441,11.1835056730873,35.1336956413857,41.2610012422507,23.5020490791904,38.4606549664004,32.9946502046374,34.3089613097275,65.1589281410979,81.4351073017155,63.8324108733351,67.9653091951801,71.3446125951622,64.8298699025827,67.1678829100517,47.1516254626964,32.4702193292343,54.8408385801074,49.4538361333214,32.2698698547505,41.6122809024586,40.5139792062036,37.2240900054216,38.3045490221976,29.9786105466548,32.5144984222259,26.9051505568576,45.053710522964,30.4460789070189,34.6623714602979,43.6199507530874,26.6925359256574,34.4769644856945,34.5713989165345,46.5740184355274,41.4305780514809,46.065275373534,38.6462359178006,21.3339545711567,22.2799756982041,23.768192112854,20.1233025247429,23.2181793461937,19.4376562238097,20.6955210827863,23.3397859217669,24.1704258700041,24.6839774870221,19.5359282254123,26.99591357877,23.5381979754785,21.735461413814,28.1833479396781,66.2413337977001,40.6473218898173,5.61711931072457,17.982638533121,33.9128318351022,26.9394539358109,22.1652033474001,24.6053900040478,22.6825604721768,19.7834651157062,23.2519240156811,18.1168850196412,20.6094871216221,28.0528625578023,23.7856186285327,32.357498711552,19.0201483889731,21.3081162382173,48.3653147430358,36.4452755225035,32.6852433451933,30.3440478489518,40.1481648436985,43.6946157916685,35.2859877153356,32.9170629994513,24.6488002710958,28.3813477020141,3.85388415213294,32.0342602974901,31.8425572083389,33.2795926329584,22.1117532313468,20.9824128984603,17.3145579211365,23.8787794084173,18.9698215326791,15.1008777253445,21.5652309791032,30.5155577088173,15.601883655728,14.3969960429854,6.99649912735457,11.5786445127208,32.8860678496556,40.3616707071133,25.5855013013981,26.4802333809293,31.6831835189478,30.3186325969687,35.23045885113,40.9780660501378,37.5171642972735,42.5212204125648,42.893332768864,33.2642528872948,37.990696010497,37.1748080554485,58.8086007363162,56.0222854333271,29.5058563811422,27.869611376778,40.6192992669114,44.0715941586684,24.4263068611246,19.1877904675323,40.3850520852809,35.1394869866975,45.023490126155,48.7496347823206,47.9017149277147,42.178403087536,43.7195557808886,37.1164939547366,33.994748903401,66.1921911828922,34.0656204499845,63.7474861128774,50.332070440255,44.047022833667,26.5490276679926,34.2320696978524,38.6974152914881,20.369348613637,30.4160949667196,31.9732553861685,24.8091161441492,41.4428451604356,28.8762876491624,16.7499481705982,12.6502330289999,18.5643977846736,25.8734100372879,32.5910580196672,43.5938764347883,35.5799478152443,34.5813455602433,39.0627710548535,37.6817257178857,55.4126207388571,17.1310346886509,29.8683219917986,9.04166432025344,22.4245304000413,29.063596805263,23.1601631724118,25.5456816166712,18.5479216711919,17.7803310344209,35.4162326840073,32.465467351592,48.5009139713573,30.5570970160024,27.5017947226849,36.3606645737927,26.3094899187501,36.8853193086666,34.4280572716199,33.1679937130617,43.9148484286952,40.3328391815948,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| ||
|short_description=p1@Ssbp4 | |short_description=p1@Ssbp4 | ||
}} | }} |
Latest revision as of 17:40, 25 September 2015
Short description: | p1@Ssbp4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ssbp4_5end |
Coexpression cluster: | MCL_coexpression_mm9:247 |
Association with transcript: | 0bp_to_ENSMUST00000049908, NM_133772, uc009max.2_5end |
EntrezGene: | Ssbp4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.13e-12 | 43 |
ectodermal cell | 5.59e-12 | 44 |
neurectodermal cell | 5.59e-12 | 44 |
neuron | 1.32e-09 | 33 |
neuronal stem cell | 1.32e-09 | 33 |
neuroblast | 1.32e-09 | 33 |
electrically signaling cell | 1.32e-09 | 33 |
electrically responsive cell | 1.82e-09 | 39 |
electrically active cell | 1.82e-09 | 39 |
somatic stem cell | 2.55e-08 | 91 |
multi fate stem cell | 2.55e-08 | 91 |
CNS neuron (sensu Vertebrata) | 4.98e-08 | 23 |
neuroblast (sensu Vertebrata) | 4.98e-08 | 23 |
stem cell | 7.17e-08 | 97 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.37e-25 | 73 |
nervous system | 1.33e-23 | 75 |
regional part of nervous system | 6.18e-18 | 54 |
ectoderm-derived structure | 2.48e-17 | 95 |
ectoderm | 2.48e-17 | 95 |
presumptive ectoderm | 2.48e-17 | 95 |
neurectoderm | 8.64e-17 | 64 |
neural plate | 8.64e-17 | 64 |
presumptive neural plate | 8.64e-17 | 64 |
neural tube | 1.67e-16 | 52 |
neural rod | 1.67e-16 | 52 |
future spinal cord | 1.67e-16 | 52 |
neural keel | 1.67e-16 | 52 |
brain | 2.01e-14 | 47 |
future brain | 2.01e-14 | 47 |
regional part of brain | 6.23e-14 | 46 |
gray matter | 1.71e-13 | 34 |
ecto-epithelium | 2.71e-13 | 73 |
anterior neural tube | 2.42e-12 | 40 |
pre-chordal neural plate | 3.98e-12 | 49 |
regional part of forebrain | 7.19e-12 | 39 |
forebrain | 7.19e-12 | 39 |
future forebrain | 7.19e-12 | 39 |
brain grey matter | 5.50e-11 | 29 |
regional part of telencephalon | 5.50e-11 | 29 |
telencephalon | 5.50e-11 | 29 |
structure with developmental contribution from neural crest | 3.15e-10 | 92 |
regional part of cerebral cortex | 2.68e-07 | 17 |
cerebral cortex | 6.37e-07 | 21 |
cerebral hemisphere | 6.37e-07 | 21 |
pallium | 6.37e-07 | 21 |