FFCP PHASE1:Mm9::chr5:34326186..34326197,+: Difference between revisions
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{{FFCP|EntrezGene=381633|HGNC=|MCL_coexpression_id=1294|UniProt=Q3UR78|association_with_transcript=3bp_to_ENSMUST00000114382_5end|description=CAGE_peak_2_at_Gm1673_5end|id=chr5:34326186..34326197,+|ontology_enrichment_celltype=CL:0000221!4.72e-23!44;CL:0000133!4.72e-23!44;CL:0002319!1.74e-22!43;CL:0000540!2.48e-19!33;CL:0000047!2.48e-19!33;CL:0000031!2.48e-19!33;CL:0000404!2.48e-19!33;CL:0000055!1.14e-18!50;CL:0000393!2.23e-16!39;CL:0000211!2.23e-16!39;CL:0000117!9.30e-16!23;CL:0000337!9.30e-16!23;CL:0002321!1.40e-08!70;CL:0000220!1.40e-08!70|ontology_enrichment_celltype_v019_2=CL:0000221,1.28e-25,44;CL:0000133,1.28e-25,44;CL:0002319,5.64e-25,43;CL:0000540,9.64e-22,33;CL:0000047,9.64e-22,33;CL:0000031,9.64e-22,33;CL:0000404,9.64e-22,33;CL:0000117,1.11e-17,23;CL:0000337,1.11e-17,23;CL:0000393,7.14e-17,39;CL:0000211,7.14e-17,39;CL:0002321,1.55e-11,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.28e-34!73;UBERON:0005743!3.28e-34!73;UBERON:0000073!1.29e-33!75;UBERON:0001016!1.29e-33!75;UBERON:0004121!3.34e-29!102;UBERON:0000924!3.34e-29!102;UBERON:0006601!3.34e-29!102;UBERON:0002346!5.89e-26!71;UBERON:0003075!5.89e-26!71;UBERON:0007284!5.89e-26!71;UBERON:0001049!3.22e-23!52;UBERON:0005068!3.22e-23!52;UBERON:0006241!3.22e-23!52;UBERON:0007135!3.22e-23!52;UBERON:0002616!3.57e-21!49;UBERON:0000033!3.75e-21!63;UBERON:0000955!4.82e-21!50;UBERON:0006238!4.82e-21!50;UBERON:0003056!2.24e-18!49;UBERON:0003080!3.01e-17!40;UBERON:0002780!4.92e-17!39;UBERON:0001890!4.92e-17!39;UBERON:0006240!4.92e-17!39;UBERON:0002020!1.10e-16!34;UBERON:0002791!2.09e-13!29;UBERON:0003528!2.09e-13!29;UBERON:0001893!2.09e-13!29;UBERON:0007811!2.97e-09!86;UBERON:0000153!3.05e-09!94;UBERON:0000956!5.71e-09!21;UBERON:0001869!5.71e-09!21;UBERON:0000203!5.71e-09!21;UBERON:0002619!3.24e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.60e-38,73;UBERON:0001016,2.68e-37,75;UBERON:0004121,6.87e-31,95;UBERON:0000924,6.87e-31,95;UBERON:0006601,6.87e-31,95;UBERON:0002346,3.11e-28,64;UBERON:0003075,3.11e-28,64;UBERON:0007284,3.11e-28,64;UBERON:0000073,1.64e-27,54;UBERON:0001049,7.78e-26,52;UBERON:0005068,7.78e-26,52;UBERON:0006241,7.78e-26,52;UBERON:0007135,7.78e-26,52;UBERON:0010371,1.71e-23,73;UBERON:0010314,3.39e-22,92;UBERON:0002616,1.41e-21,46;UBERON:0000955,1.95e-21,47;UBERON:0006238,1.95e-21,47;UBERON:0003056,8.36e-20,49;UBERON:0003080,4.58e-19,40;UBERON:0002780,8.03e-19,39;UBERON:0001890,8.03e-19,39;UBERON:0006240,8.03e-19,39;UBERON:0002020,2.08e-18,34;UBERON:0003528,1.06e-14,29;UBERON:0002791,1.06e-14,29;UBERON:0001893,1.06e-14,29;UBERON:0000956,1.09e-09,21;UBERON:0001869,1.09e-09,21;UBERON:0000203,1.09e-09,21;UBERON:0002619,1.04e-07,17;UBERON:0003076,2.62e-07,12;UBERON:0003057,2.62e-07,12;UBERON:0000922,8.95e-07,320|phase1_expression=3.68342348341026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315462165358238,0,0,3.14660173558958,0.0992909512008853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.418531630736908,0.7813353445238,0,0.588231488031014,0.683045484958446,0.971020706062307,0.377690453926732,1.11514624341466,0.734187008646726,7.82391344348039,5.45062890951116,5.93152693383074,4.27745777963423,3.21968769738334,7.18762821824858,0,0,0,1.28629718017973,0.573066879877513,0.515672092277442,31.1567349723781,20.1016572123373,24.0855933332348,2.37191172448392,1.77858959222228,4.04954872776629,1.97773272513395,6.3943210345149,7.49000276296012,13.831858991576,9.7468235569969,12.1505344498522,9.88527318351495,18.2816630018434,17.6694832761291,13.4739879136449,8.4344014496048,20.2228133054205,9.91042928994498,5.49055553766307,7.83393319606842,21.101806036831,16.1018252740241,28.129322010065,13.6799669510677,17.4456409109821,7.63991238884051,12.6690291753677,10.6778760599327,17.8943467992289,0.454357159999104,1.88928900266964,1.73918693221007,0,0,0,0,0,0.561777680527007,0,0,0,7.04217098883402,0,0,0,4.11332977921307,2.02687892380079,3.0331466700887,0.34255163915718,0,1.1875371125186,2.60227990149204,2.43572382649713,1.61430848079241,1.95939432718409,1.76383060703557,1.38233250462643,0,0,0,0.323533699894818,0.220841518460394,0.969750506270444,0,2.04946557908083,2.72280718857492,0,0.11981512450592,0.599902730993408,0.889491589511453,2.84602214869163,2.28750301409313,9.04711335212624,2.25971616249959,3.3243009452943,2.28566849015516,4.05603157669394,1.62942982160506,0.497627882440372,0.505445516867349,0.210441855886474,5.33493816147085,10.8053989083732,4.32149111532838,3.61691562805716,1.90502197623718,2.17793324484245,4.40398105430725,0.776110112217047,3.23351989399263,2.45837904218165,2.11141348996739,2.6303487891309,1.11218899690239,0.696504333044333,0.411564272815887,2.18937693500343,0,0.51469581422943,0.852490498186778,2.69263504296152,2.11073453982987,1.62055855314913,1.42046841351126,1.18058539048442,1.07986979021165,1.62773761325285,1.3413670069981,0.817357396570186,0.493679549740441,0.492502392237286,0.243206428637567,0,0.658650345873152,0.402619256281115,2.10289948564127,5.45394445610208,0,0,3.41261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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=381633 | |||
|HGNC= | |||
|MCL_coexpression_id=1294 | |||
|TSSclassifier=NA | |||
|UniProt=Q3UR78 | |||
|association_with_transcript=3bp_to_ENSMUST00000114382_5end | |||
|cluster_id=chr5:34326186..34326197,+ | |||
|description=CAGE_peak_2_at_Gm1673_5end | |||
|id=chr5:34326186..34326197,+ | |||
|ontology_enrichment_celltype=CL:0000221!4.72e-23!44;CL:0000133!4.72e-23!44;CL:0002319!1.74e-22!43;CL:0000540!2.48e-19!33;CL:0000047!2.48e-19!33;CL:0000031!2.48e-19!33;CL:0000404!2.48e-19!33;CL:0000055!1.14e-18!50;CL:0000393!2.23e-16!39;CL:0000211!2.23e-16!39;CL:0000117!9.30e-16!23;CL:0000337!9.30e-16!23;CL:0002321!1.40e-08!70;CL:0000220!1.40e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.28e-25,44;CL:0000133,1.28e-25,44;CL:0002319,5.64e-25,43;CL:0000540,9.64e-22,33;CL:0000047,9.64e-22,33;CL:0000031,9.64e-22,33;CL:0000404,9.64e-22,33;CL:0000117,1.11e-17,23;CL:0000337,1.11e-17,23;CL:0000393,7.14e-17,39;CL:0000211,7.14e-17,39;CL:0002321,1.55e-11,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.28e-34!73;UBERON:0005743!3.28e-34!73;UBERON:0000073!1.29e-33!75;UBERON:0001016!1.29e-33!75;UBERON:0004121!3.34e-29!102;UBERON:0000924!3.34e-29!102;UBERON:0006601!3.34e-29!102;UBERON:0002346!5.89e-26!71;UBERON:0003075!5.89e-26!71;UBERON:0007284!5.89e-26!71;UBERON:0001049!3.22e-23!52;UBERON:0005068!3.22e-23!52;UBERON:0006241!3.22e-23!52;UBERON:0007135!3.22e-23!52;UBERON:0002616!3.57e-21!49;UBERON:0000033!3.75e-21!63;UBERON:0000955!4.82e-21!50;UBERON:0006238!4.82e-21!50;UBERON:0003056!2.24e-18!49;UBERON:0003080!3.01e-17!40;UBERON:0002780!4.92e-17!39;UBERON:0001890!4.92e-17!39;UBERON:0006240!4.92e-17!39;UBERON:0002020!1.10e-16!34;UBERON:0002791!2.09e-13!29;UBERON:0003528!2.09e-13!29;UBERON:0001893!2.09e-13!29;UBERON:0007811!2.97e-09!86;UBERON:0000153!3.05e-09!94;UBERON:0000956!5.71e-09!21;UBERON:0001869!5.71e-09!21;UBERON:0000203!5.71e-09!21;UBERON:0002619!3.24e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.60e-38,73;UBERON:0001016,2.68e-37,75;UBERON:0004121,6.87e-31,95;UBERON:0000924,6.87e-31,95;UBERON:0006601,6.87e-31,95;UBERON:0002346,3.11e-28,64;UBERON:0003075,3.11e-28,64;UBERON:0007284,3.11e-28,64;UBERON:0000073,1.64e-27,54;UBERON:0001049,7.78e-26,52;UBERON:0005068,7.78e-26,52;UBERON:0006241,7.78e-26,52;UBERON:0007135,7.78e-26,52;UBERON:0010371,1.71e-23,73;UBERON:0010314,3.39e-22,92;UBERON:0002616,1.41e-21,46;UBERON:0000955,1.95e-21,47;UBERON:0006238,1.95e-21,47;UBERON:0003056,8.36e-20,49;UBERON:0003080,4.58e-19,40;UBERON:0002780,8.03e-19,39;UBERON:0001890,8.03e-19,39;UBERON:0006240,8.03e-19,39;UBERON:0002020,2.08e-18,34;UBERON:0003528,1.06e-14,29;UBERON:0002791,1.06e-14,29;UBERON:0001893,1.06e-14,29;UBERON:0000956,1.09e-09,21;UBERON:0001869,1.09e-09,21;UBERON:0000203,1.09e-09,21;UBERON:0002619,1.04e-07,17;UBERON:0003076,2.62e-07,12;UBERON:0003057,2.62e-07,12;UBERON:0000922,8.95e-07,320 | |||
|phase1_expression=3.68342348341026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315462165358238,0,0,3.14660173558958,0.0992909512008853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.418531630736908,0.7813353445238,0,0.588231488031014,0.683045484958446,0.971020706062307,0.377690453926732,1.11514624341466,0.734187008646726,7.82391344348039,5.45062890951116,5.93152693383074,4.27745777963423,3.21968769738334,7.18762821824858,0,0,0,1.28629718017973,0.573066879877513,0.515672092277442,31.1567349723781,20.1016572123373,24.0855933332348,2.37191172448392,1.77858959222228,4.04954872776629,1.97773272513395,6.3943210345149,7.49000276296012,13.831858991576,9.7468235569969,12.1505344498522,9.88527318351495,18.2816630018434,17.6694832761291,13.4739879136449,8.4344014496048,20.2228133054205,9.91042928994498,5.49055553766307,7.83393319606842,21.101806036831,16.1018252740241,28.129322010065,13.6799669510677,17.4456409109821,7.63991238884051,12.6690291753677,10.6778760599327,17.8943467992289,0.454357159999104,1.88928900266964,1.73918693221007,0,0,0,0,0,0.561777680527007,0,0,0,7.04217098883402,0,0,0,4.11332977921307,2.02687892380079,3.0331466700887,0.34255163915718,0,1.1875371125186,2.60227990149204,2.43572382649713,1.61430848079241,1.95939432718409,1.76383060703557,1.38233250462643,0,0,0,0.323533699894818,0.220841518460394,0.969750506270444,0,2.04946557908083,2.72280718857492,0,0.11981512450592,0.599902730993408,0.889491589511453,2.84602214869163,2.28750301409313,9.04711335212624,2.25971616249959,3.3243009452943,2.28566849015516,4.05603157669394,1.62942982160506,0.497627882440372,0.505445516867349,0.210441855886474,5.33493816147085,10.8053989083732,4.32149111532838,3.61691562805716,1.90502197623718,2.17793324484245,4.40398105430725,0.776110112217047,3.23351989399263,2.45837904218165,2.11141348996739,2.6303487891309,1.11218899690239,0.696504333044333,0.411564272815887,2.18937693500343,0,0.51469581422943,0.852490498186778,2.69263504296152,2.11073453982987,1.62055855314913,1.42046841351126,1.18058539048442,1.07986979021165,1.62773761325285,1.3413670069981,0.817357396570186,0.493679549740441,0.492502392237286,0.243206428637567,0,0.658650345873152,0.402619256281115,2.10289948564127,5.45394445610208,0,0,3.41261200856374,2.55460339046482,0.902072229254653,0.403367049246685,0.444756087689741,0.380451252225118,0,0.494096864172033,0.251335208800269,0.198956472041151,0.19496408711912,0,0.216138049874694,0.199141273254367,3.22435431620239,1.5994791765362,0,1.22190796707189,1.16371492300575,0.771494018793504,0.505892296994058,0.147610147979602,0.31399745568275,0,0,0.166845105716094,0.393117990226406,0,0.405720242777006,0.72353147925725,0,0,0,0.549122826376163,0,0.372140947668503,0,0,0,0,0.369506380333209,5.30575952957357,1.30371981153621,1.86719594352707,0.938760993154008,1.00503754465089,0.476087281772027,0.585400943573396,0.157635144106191,0.8858587585951,0.478364305972461,0,0,0.289298117163023,1.50791283939272,0,0.491764273019036,0.275936746304732,5.13761887960934,5.50894926983355,0.983609672260053,0,5.04813151066011,5.0757036758563,4.30846795465598,3.82350076724083,3.7875774594007,5.09537755419898,7.2865926301481,5.84511715822624,3.55759000151871,1.60660658210904,0.425820255624806,4.45164009168138,1.79175655288934,0.329940245945071,0,1.94224508923985,3.32555912661226,0.754420319023592,2.06711325016541,1.53717573971964,0.258428293168221,0.727067458955011,0.356497378384721,0.316036757935816,1.05418608574999,0,3.74483566329167,5.76195500900193,5.82114077022395,6.00143698088458,2.30542303734956,4.99432689285798,5.26556865926787,5.78483403317739,0,0.21183207086382,0,0.16488625294148,0.322928853391811,0.663442174209714,0.238744688006273,0.164140899745061,0.291480836629851,3.33765543618917,0,1.23832120777933,0,0.565105371014073,0,0.228778173206523,0.169978429993855,0.279902904647316,0.138199973804424,0,3.00519193902079,0.406638934253697,1.08005340821801,0.627264888043406,0.655087691238533,0.539457385539283,0.41326727862668,0.523511883968059,0.129614973291793,0,11.837551712368,1.79419855252775,2.15096037594227,1.94451188344048,2.0665571756437,1.35164900392623,1.64300134104056,2.21347454234715,2.9360616439199,7.48910774560619,4.60848010012585,0,2.22997736819181,1.02710957164827,0.51968329191118,0.537080087002444,0.596044064343795,0.240390899039938,0,0.201932899896295,0.228620419965,0.100826185136841,0.0974578807397524,0.0962118416403295,0.233753804363138,0,3.7737612073591,11.3936597894034,2.18250001273302,0.19318959403219,0,0.549454872801795,0.214368379079066,10.5330141847426,6.21227026878773,4.14292712856459,6.87474616127276,13.2326950404639,5.48066015816514,4.5323633843382,6.07520250208625,0.45032120322422,2.26571204492102,3.10656187051092,3.84013186061454,4.78829848081237,3.75613932659095,2.67417388775123,1.88651846365184,2.75765262675021,1.11123363900808,1.64828045791115,1.28367683836726,2.52697211763797,1.01391719956096,1.32038438970253,1.68554713445788,2.04880487695582,1.09127391015665,1.90517476513229,1.73826488917283,3.47236596834669,0.824171801606613,1.61918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| |||
|short_description=p2@Gm1673 | |||
}} |
Latest revision as of 23:15, 25 September 2015
Short description: | p2@Gm1673 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Gm1673_5end |
Coexpression cluster: | MCL_coexpression_mm9:1294 |
Association with transcript: | 3bp_to_ENSMUST00000114382_5end |
EntrezGene: | Gm1673 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.28e-25 | 44 |
neurectodermal cell | 1.28e-25 | 44 |
neural cell | 5.64e-25 | 43 |
neuron | 9.64e-22 | 33 |
neuronal stem cell | 9.64e-22 | 33 |
neuroblast | 9.64e-22 | 33 |
electrically signaling cell | 9.64e-22 | 33 |
CNS neuron (sensu Vertebrata) | 1.11e-17 | 23 |
neuroblast (sensu Vertebrata) | 1.11e-17 | 23 |
electrically responsive cell | 7.14e-17 | 39 |
electrically active cell | 7.14e-17 | 39 |
embryonic cell | 1.55e-11 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.60e-38 | 73 |
nervous system | 2.68e-37 | 75 |
ectoderm-derived structure | 6.87e-31 | 95 |
ectoderm | 6.87e-31 | 95 |
presumptive ectoderm | 6.87e-31 | 95 |
neurectoderm | 3.11e-28 | 64 |
neural plate | 3.11e-28 | 64 |
presumptive neural plate | 3.11e-28 | 64 |
regional part of nervous system | 1.64e-27 | 54 |
neural tube | 7.78e-26 | 52 |
neural rod | 7.78e-26 | 52 |
future spinal cord | 7.78e-26 | 52 |
neural keel | 7.78e-26 | 52 |
ecto-epithelium | 1.71e-23 | 73 |
structure with developmental contribution from neural crest | 3.39e-22 | 92 |
regional part of brain | 1.41e-21 | 46 |
brain | 1.95e-21 | 47 |
future brain | 1.95e-21 | 47 |
pre-chordal neural plate | 8.36e-20 | 49 |
anterior neural tube | 4.58e-19 | 40 |
regional part of forebrain | 8.03e-19 | 39 |
forebrain | 8.03e-19 | 39 |
future forebrain | 8.03e-19 | 39 |
gray matter | 2.08e-18 | 34 |
brain grey matter | 1.06e-14 | 29 |
regional part of telencephalon | 1.06e-14 | 29 |
telencephalon | 1.06e-14 | 29 |
cerebral cortex | 1.09e-09 | 21 |
cerebral hemisphere | 1.09e-09 | 21 |
pallium | 1.09e-09 | 21 |
regional part of cerebral cortex | 1.04e-07 | 17 |
posterior neural tube | 2.62e-07 | 12 |
chordal neural plate | 2.62e-07 | 12 |
embryo | 8.95e-07 | 320 |