FFCP PHASE1:Mm9::chr19:55968998..55969011,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=21416 | |EntrezGene=21416 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=141 | |||
|TSSclassifier=NA | |||
|UniProt=D3Z002 | |UniProt=D3Z002 | ||
|association_with_transcript=-12bp_to_ENSMUST00000142291_5end | |association_with_transcript=-12bp_to_ENSMUST00000142291_5end | ||
|cluster_id=chr19:55968998..55969011,+ | |||
|description=CAGE_peak_39_at_Tcf7l2_5end | |description=CAGE_peak_39_at_Tcf7l2_5end | ||
|id=chr19:55968998..55969011,+ | |id=chr19:55968998..55969011,+ | ||
|ontology_enrichment_celltype=CL:0000117!2.14e-11!23;CL:0000337!2.14e-11!23;CL:0002613!5.92e-09!3;CL:0000120!8.38e-09!3;CL:0002610!1.75e-08!3;CL:0000540!3.24e-07!33;CL:0000047!3.24e-07!33;CL:0000031!3.24e-07!33;CL:0000404!3.24e-07!33;CL:0000393!7.62e-07!39;CL:0000211!7.62e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.08e-27,23;CL:0000337,1.08e-27,23;CL:0002613,2.12e-25,3;CL:0000120,6.49e-25,3;CL:0002610,7.05e-24,3;CL:0000540,3.72e-19,33;CL:0000047,3.72e-19,33;CL:0000031,3.72e-19,33;CL:0000404,3.72e-19,33;CL:0000393,3.99e-16,39;CL:0000211,3.99e-16,39;CL:0002319,1.43e-14,43;CL:0000221,3.15e-14,44;CL:0000133,3.15e-14,44;CL:0002321,1.07e-08,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004684!1.75e-08!3;UBERON:0002275!1.75e-08!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004684,7.05e-24,3;UBERON:0002275,7.05e-24,3;UBERON:0000369,1.59e-15,5;UBERON:0002435,1.59e-15,5;UBERON:0000204,1.59e-15,5;UBERON:0010082,1.59e-15,5;UBERON:0001017,1.39e-12,73;UBERON:0001016,3.15e-12,75;UBERON:0002420,6.22e-10,8;UBERON:0007245,6.22e-10,8;UBERON:0010009,6.22e-10,8;UBERON:0010011,6.22e-10,8;UBERON:0000454,6.22e-10,8;UBERON:0004121,1.73e-09,95;UBERON:0000924,1.73e-09,95;UBERON:0006601,1.73e-09,95;UBERON:0002259,4.39e-09,1;UBERON:0002314,4.39e-09,1;UBERON:0004061,4.39e-09,1;UBERON:0006777,4.39e-09,1;UBERON:0005882,4.39e-09,1;UBERON:0000073,6.07e-09,54 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.22548106945558,3.1739458756322,1.90149421051854,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0958454710182364,0,1.10115880999389,2.042997409363,1.0752457327937,6.59431438650969,7.31901148819277,2.08365348222704,0,0,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247194967734374,0,0,0,0,0,0,0,0,0,0,0,0,1.49790639404823,0,0,0,0,1.66230435647648,0.648965052271031,0.101839363850316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0.216138049874694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.119372344003136,0.164140899745061,0,0,0,0,0,0.188368457004691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0.399024873401031,0.341467211508268,0.243106717068294,0,0.183843508450014,0,0.206035057238894,0,0,0,0,0.0936415074698824,0.128050304809739,0.0574354689556133,0,0,0,0,0,0.342869252385415,0,0.238436189947321,0,0.0941093804153306,0.0846146078916765,0.548783918618318,0.526139422875686,0,0,0,0,0,0,0,0.249810577937946,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.22548106945558,3.1739458756322,1.90149421051854,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0958454710182364,0,1.10115880999389,2.042997409363,1.0752457327937,6.59431438650969,7.31901148819277,2.08365348222704,0,0,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247194967734374,0,0,0,0,0,0,0,0,0,0,0,0,1.49790639404823,0,0,0,0,1.66230435647648,0.648965052271031,0.101839363850316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0.216138049874694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.119372344003136,0.164140899745061,0,0,0,0,0,0.188368457004691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0.399024873401031,0.341467211508268,0.243106717068294,0,0.183843508450014,0,0.206035057238894,0,0,0,0,0.0936415074698824,0.128050304809739,0.0574354689556133,0,0,0,0,0,0.342869252385415,0,0.238436189947321,0,0.0941093804153306,0.0846146078916765,0.548783918618318,0.526139422875686,0,0,0,0,0,0,0,0.249810577937946,0,0,0,0,0 | ||
|short_description=p39@Tcf7l2 | |short_description=p39@Tcf7l2 | ||
}} | }} |
Latest revision as of 23:56, 25 September 2015
Short description: | p39@Tcf7l2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_39_at_Tcf7l2_5end |
Coexpression cluster: | MCL_coexpression_mm9:141 |
Association with transcript: | -12bp_to_ENSMUST00000142291_5end |
EntrezGene: | Tcf7l2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.08e-27 | 23 |
neuroblast (sensu Vertebrata) | 1.08e-27 | 23 |
striatum neuron | 2.12e-25 | 3 |
granule cell | 6.49e-25 | 3 |
raphe nuclei neuron | 7.05e-24 | 3 |
neuron | 3.72e-19 | 33 |
neuronal stem cell | 3.72e-19 | 33 |
neuroblast | 3.72e-19 | 33 |
electrically signaling cell | 3.72e-19 | 33 |
electrically responsive cell | 3.99e-16 | 39 |
electrically active cell | 3.99e-16 | 39 |
neural cell | 1.43e-14 | 43 |
ectodermal cell | 3.15e-14 | 44 |
neurectodermal cell | 3.15e-14 | 44 |
embryonic cell | 1.07e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
raphe nuclei | 7.05e-24 | 3 |
reticular formation | 7.05e-24 | 3 |
corpus striatum | 1.59e-15 | 5 |
striatum | 1.59e-15 | 5 |
ventral part of telencephalon | 1.59e-15 | 5 |
future corpus striatum | 1.59e-15 | 5 |
central nervous system | 1.39e-12 | 73 |
nervous system | 3.15e-12 | 75 |
basal ganglion | 6.22e-10 | 8 |
nuclear complex of neuraxis | 6.22e-10 | 8 |
aggregate regional part of brain | 6.22e-10 | 8 |
collection of basal ganglia | 6.22e-10 | 8 |
cerebral subcortex | 6.22e-10 | 8 |
ectoderm-derived structure | 1.73e-09 | 95 |
ectoderm | 1.73e-09 | 95 |
presumptive ectoderm | 1.73e-09 | 95 |
corpora quadrigemina | 4.39e-09 | 1 |
midbrain tectum | 4.39e-09 | 1 |
neural tube mantle layer | 4.39e-09 | 1 |
tectal plate | 4.39e-09 | 1 |
neural tube alar plate | 4.39e-09 | 1 |
regional part of nervous system | 6.07e-09 | 54 |