FFCP PHASE1:Mm9::chr4:102432899..102432980,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=73094 | |EntrezGene=73094 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q8VD37,F8WIR7,D3YVG6,E9QMC8,F6VMS8,A2AIZ0 | |UniProt=Q8VD37,F8WIR7,D3YVG6,E9QMC8,F6VMS8,A2AIZ0 | ||
|association_with_transcript=0bp_to_ENSMUST00000072481,ENSMUST00000080728,ENSMUST00000102775,ENSMUST00000106873,ENSMUST00000106879,ENSMUST00000136164,ENSMUST00000137592,ENSMUST00000140289,ENSMUST00000156596,NM_144906,uc008two.1_5end | |association_with_transcript=0bp_to_ENSMUST00000072481,ENSMUST00000080728,ENSMUST00000102775,ENSMUST00000106873,ENSMUST00000106879,ENSMUST00000136164,ENSMUST00000137592,ENSMUST00000140289,ENSMUST00000156596,NM_144906,uc008two.1_5end | ||
|cluster_id=chr4:102432899..102432980,+ | |||
|description=CAGE_peak_1_at_Sgip1_5end | |description=CAGE_peak_1_at_Sgip1_5end | ||
|id=chr4:102432899..102432980,+ | |id=chr4:102432899..102432980,+ | ||
|ontology_enrichment_celltype=CL:0000540!4.93e-16!33;CL:0000047!4.93e-16!33;CL:0000031!4.93e-16!33;CL:0000404!4.93e-16!33;CL:0000221!1.49e-12!44;CL:0000133!1.49e-12!44;CL:0002319!1.66e-12!43;CL:0000393!7.63e-12!39;CL:0000211!7.63e-12!39;CL:0000117!4.98e-11!23;CL:0000337!4.98e-11!23;CL:0000055!6.53e-09!50 | |ontology_enrichment_celltype=CL:0000540!4.93e-16!33;CL:0000047!4.93e-16!33;CL:0000031!4.93e-16!33;CL:0000404!4.93e-16!33;CL:0000221!1.49e-12!44;CL:0000133!1.49e-12!44;CL:0002319!1.66e-12!43;CL:0000393!7.63e-12!39;CL:0000211!7.63e-12!39;CL:0000117!4.98e-11!23;CL:0000337!4.98e-11!23;CL:0000055!6.53e-09!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.24e-16,33;CL:0000047,2.24e-16,33;CL:0000031,2.24e-16,33;CL:0000404,2.24e-16,33;CL:0000221,6.54e-13,44;CL:0000133,6.54e-13,44;CL:0002319,7.27e-13,43;CL:0000393,2.75e-12,39;CL:0000211,2.75e-12,39;CL:0000117,2.97e-11,23;CL:0000337,2.97e-11,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.08e-29!102;UBERON:0000924!1.08e-29!102;UBERON:0006601!1.08e-29!102;UBERON:0001017!7.99e-28!73;UBERON:0005743!7.99e-28!73;UBERON:0000073!3.88e-27!75;UBERON:0001016!3.88e-27!75;UBERON:0002346!1.11e-24!71;UBERON:0003075!1.11e-24!71;UBERON:0007284!1.11e-24!71;UBERON:0000033!6.08e-22!63;UBERON:0001049!7.94e-19!52;UBERON:0005068!7.94e-19!52;UBERON:0006241!7.94e-19!52;UBERON:0007135!7.94e-19!52;UBERON:0003056!1.39e-18!49;UBERON:0000955!2.85e-18!50;UBERON:0006238!2.85e-18!50;UBERON:0002616!1.48e-17!49;UBERON:0002020!1.27e-16!34;UBERON:0003080!1.08e-14!40;UBERON:0002791!3.09e-14!29;UBERON:0003528!3.09e-14!29;UBERON:0001893!3.09e-14!29;UBERON:0002780!4.36e-14!39;UBERON:0001890!4.36e-14!39;UBERON:0006240!4.36e-14!39;UBERON:0000956!1.75e-10!21;UBERON:0001869!1.75e-10!21;UBERON:0000203!1.75e-10!21;UBERON:0000468!3.86e-10!333;UBERON:0000153!1.75e-09!94;UBERON:0007811!3.27e-09!86;UBERON:0002619!5.98e-09!17;UBERON:0002021!5.04e-08!10;UBERON:0000411!5.04e-08!10;UBERON:0001950!5.04e-08!10;UBERON:0000922!2.16e-07!328;UBERON:0000479!2.27e-07!349 | |ontology_enrichment_uberon=UBERON:0004121!1.08e-29!102;UBERON:0000924!1.08e-29!102;UBERON:0006601!1.08e-29!102;UBERON:0001017!7.99e-28!73;UBERON:0005743!7.99e-28!73;UBERON:0000073!3.88e-27!75;UBERON:0001016!3.88e-27!75;UBERON:0002346!1.11e-24!71;UBERON:0003075!1.11e-24!71;UBERON:0007284!1.11e-24!71;UBERON:0000033!6.08e-22!63;UBERON:0001049!7.94e-19!52;UBERON:0005068!7.94e-19!52;UBERON:0006241!7.94e-19!52;UBERON:0007135!7.94e-19!52;UBERON:0003056!1.39e-18!49;UBERON:0000955!2.85e-18!50;UBERON:0006238!2.85e-18!50;UBERON:0002616!1.48e-17!49;UBERON:0002020!1.27e-16!34;UBERON:0003080!1.08e-14!40;UBERON:0002791!3.09e-14!29;UBERON:0003528!3.09e-14!29;UBERON:0001893!3.09e-14!29;UBERON:0002780!4.36e-14!39;UBERON:0001890!4.36e-14!39;UBERON:0006240!4.36e-14!39;UBERON:0000956!1.75e-10!21;UBERON:0001869!1.75e-10!21;UBERON:0000203!1.75e-10!21;UBERON:0000468!3.86e-10!333;UBERON:0000153!1.75e-09!94;UBERON:0007811!3.27e-09!86;UBERON:0002619!5.98e-09!17;UBERON:0002021!5.04e-08!10;UBERON:0000411!5.04e-08!10;UBERON:0001950!5.04e-08!10;UBERON:0000922!2.16e-07!328;UBERON:0000479!2.27e-07!349 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,7.57e-30,95;UBERON:0000924,7.57e-30,95;UBERON:0006601,7.57e-30,95;UBERON:0001017,1.43e-28,73;UBERON:0001016,7.27e-28,75;UBERON:0002346,1.93e-25,64;UBERON:0003075,1.93e-25,64;UBERON:0007284,1.93e-25,64;UBERON:0010371,2.43e-24,73;UBERON:0000073,1.27e-20,54;UBERON:0001049,2.38e-19,52;UBERON:0005068,2.38e-19,52;UBERON:0006241,2.38e-19,52;UBERON:0007135,2.38e-19,52;UBERON:0003056,5.49e-19,49;UBERON:0002020,5.58e-17,34;UBERON:0000955,5.80e-17,47;UBERON:0006238,5.80e-17,47;UBERON:0010314,2.87e-16,92;UBERON:0002616,3.00e-16,46;UBERON:0003080,5.26e-15,40;UBERON:0003528,1.55e-14,29;UBERON:0002791,1.55e-14,29;UBERON:0001893,1.55e-14,29;UBERON:0002780,2.20e-14,39;UBERON:0001890,2.20e-14,39;UBERON:0006240,2.20e-14,39;UBERON:0000956,1.08e-10,21;UBERON:0001869,1.08e-10,21;UBERON:0000203,1.08e-10,21;UBERON:0002619,4.00e-09,17;UBERON:0002021,3.54e-08,10;UBERON:0000411,3.54e-08,10;UBERON:0001950,3.54e-08,10 | |||
|phase1_expression=16.0148847104794,0,0,0,0,0,0,0,0.140788722151667,0,0,0,0,0,1.33243904726265,0.809901069559304,2.09868563438444,0.315462165358238,1.91960207048034,2.12194825899015,35.8032251536004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89562681343828,1.52065396829272,1.28482726513177,0,3.92445281484804,2.63623419281366,2.72201858703997,5.03951117851305,1.43752564364972,0.167782606057736,0,0,0,1.14613375975503,0,36.6192794155872,46.5512061759389,45.6358610524449,0.338844532069132,0.889294796111139,0,0,0,6.5912024314049,4.61061966385865,20.4268536247701,22.9510095163874,19.5602214056785,46.2754594734162,51.6832385826776,26.8254850280749,27.1242682981609,26.6573448116906,125.532104339303,140.839133907962,130.258340201294,42.4673846491224,52.4224197841807,42.7148963856543,78.7296057183894,91.7303054351638,101.610834771579,78.6658323214693,83.002689905877,56.6654315308914,1.51452386666368,3.32514864469856,0.289864488701678,0,0,0.539703191637817,0,0,6.17955448579708,0,0,0,7.18301440861071,0,0,0,0,0,0,4.79572294820052,4.14300613835475,10.8362761517322,5.72501578328248,7.61163695780353,5.76538743140146,5.87818298155228,9.40709657085639,2.63899841792318,0.494389935468748,9.9773556274739,0,0.647067399789637,0.441683036920787,2.90925151881133,5.59175283654366,173.033451033824,148.288268423926,2.55457055208591,0,0,0.127070227073065,160.87514672078,143.19768868223,40.4607013803423,219.540116402845,172.863649155303,154.594305152313,138.554038659865,1.01839363850316,1.49288364732112,1.0108910337347,98.6972304107563,10.0192741081282,17.2426578325105,26.289070951581,44.7593308972074,50.3470093719826,63.6725189815703,46.288651932506,224.295822430727,5.6047678162539,6.61871280587367,8.09375171154165,2.41115305670332,5.83899223373756,3.83077383174383,6.1734640922383,1.19420560091096,0,0,0,1.44988040774851,1.17263029990548,0.540186184383045,0.710234206755631,1.37734962223183,1.23413690309903,0.465067889500816,0.536546802799238,0.700592054203017,1.15191894939436,2.29834449710733,1.62137619091711,1.90059983652932,2.63460138349261,2.14730270016595,186.737474324945,55.362681460055,0,0.528901133327089,7.25180051819795,11.6118335930219,11.8558064416326,9.68080918192044,10.4517680607089,8.3699275489526,0.949058123089023,6.0938613247884,4.52403375840485,6.36660710531683,4.67913809085888,1.79763881730844,3.45820879799511,2.98711909881551,3.98302592001472,5.71242563048644,6.76246414038483,5.49858585182348,8.72786192254316,5.40045813155453,4.3000845244495,2.80459281161244,3.1399745568275,1.48076596706161,0,0.500535317148282,0.786235980452812,0,0.405720242777006,0,0,0.575392274901621,0.162135226775035,0.274561413188081,0,1.11642284300551,0.312037673114561,0.252578877947112,0.179397413521912,0,32.1470550889892,3.22135400009824,4.72598431681875,6.28056817368196,5.86725620721255,8.87783164441623,13.8065311713888,9.75668239288994,27.9014205067958,27.9045508957456,22.8020319180207,24.7433605220764,24.866637388689,24.87963807602,0,0,1.47529281905711,1.65562047782839,125.390010780466,121.900154055891,0,4.03953483526997,91.8128918501307,103.856705982906,126.884381264619,63.3267314574263,69.0675889655422,69.3537500432639,104.845971733798,125.670018901864,145.861190062267,253.843839973228,2.55492153374884,1.06839362200353,0.651547837414304,7.9185659026817,1.32745138339963,1.94224508923985,1.209294227859,1.32023555829129,0,3.3817866273832,2.32585463851399,2.18120237686503,2.85197902707777,3.16036757935816,0,1.03135543248187,17.0219802876894,6.30213829109586,2.32845630808958,2.7863814554107,4.61084607469911,3.21063871683727,8.06290200950393,3.34911444026059,9.62154003061212,1.48282449604674,3.74898276693435,6.76033637060068,8.55761461488299,5.97097956788743,2.626191568069,2.62625439592098,2.91480836629851,121.638998118894,1.36696704638282,0.412773735926445,1.48155621895769,0.188368457004691,0.956859594047176,0.686334519619568,0,0,0,2.86401185404534,4.9032079005076,8.53941761932765,5.83228840437727,7.52717865652087,5.02233896616208,4.04593039154462,4.46328660916814,2.6175594198403,4.01806417204558,1.24267862617385,0.56369293868419,2.99033092087958,1.48912641411388,2.52786544847262,1.80823752868824,3.04121025883401,1.17357238645754,1.69265700297135,1.78260885523708,0.483168241652012,1.15212002503146,1.89606672376907,1.41907650703115,0.616265742988964,0.129920822977795,0.895133478337407,0.596044064343795,0,0.295379054349154,1.11063094942962,1.21930890648,0.907435666231565,0.877120926657772,0.192423683280659,1.40252282617883,3.62768613784338,0,0,0,6.18206700903009,3.00291960721891,2.56412273974171,3.00115730710692,0,223.641729676358,216.352861158373,234.314264996713,203.989727441957,165.104887264725,168.452839117903,201.83172756931,195.439402199312,201.648371997971,185.358191607152,6.64239024538731,17.1580695562443,13.8294220660849,12.1553358534147,14.0440818960748,8.45680138870065,15.7795176739147,13.8043488350059,19.5760717851007,15.6672271293554,15.2087579934144,16.0332390178165,15.91905626988,17.3508163017196,16.5414150592166,18.5754539600399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|phase1_expression=16.0148847104794,0,0,0,0,0,0,0,0.140788722151667,0,0,0,0,0,1.33243904726265,0.809901069559304,2.09868563438444,0.315462165358238,1.91960207048034,2.12194825899015,35.8032251536004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89562681343828,1.52065396829272,1.28482726513177,0,3.92445281484804,2.63623419281366,2.72201858703997,5.03951117851305,1.43752564364972,0.167782606057736,0,0,0,1.14613375975503,0,36.6192794155872,46.5512061759389,45.6358610524449,0.338844532069132,0.889294796111139,0,0,0,6.5912024314049,4.61061966385865,20.4268536247701,22.9510095163874,19.5602214056785,46.2754594734162,51.6832385826776,26.8254850280749,27.1242682981609,26.6573448116906,125.532104339303,140.839133907962,130.258340201294,42.4673846491224,52.4224197841807,42.7148963856543,78.7296057183894,91.7303054351638,101.610834771579,78.6658323214693,83.002689905877,56.6654315308914,1.51452386666368,3.32514864469856,0.289864488701678,0,0,0.539703191637817,0,0,6.17955448579708,0,0,0,7.18301440861071,0,0,0,0,0,0,4.79572294820052,4.14300613835475,10.8362761517322,5.72501578328248,7.61163695780353,5.76538743140146,5.87818298155228,9.40709657085639,2.63899841792318,0.494389935468748,9.9773556274739,0,0.647067399789637,0.441683036920787,2.90925151881133,5.59175283654366,173.033451033824,148.288268423926,2.55457055208591,0,0,0.127070227073065,160.87514672078,143.19768868223,40.4607013803423,219.540116402845,172.863649155303,154.594305152313,138.554038659865,1.01839363850316,1.49288364732112,1.0108910337347,98.6972304107563,10.0192741081282,17.2426578325105,26.289070951581,44.7593308972074,50.3470093719826,63.6725189815703,46.288651932506,224.295822430727,5.6047678162539,6.61871280587367,8.09375171154165,2.41115305670332,5.83899223373756,3.83077383174383,6.1734640922383,1.19420560091096,0,0,0,1.44988040774851,1.17263029990548,0.540186184383045,0.710234206755631,1.37734962223183,1.23413690309903,0.465067889500816,0.536546802799238,0.700592054203017,1.15191894939436,2.29834449710733,1.62137619091711,1.90059983652932,2.63460138349261,2.14730270016595,186.737474324945,55.362681460055,0,0.528901133327089,7.25180051819795,11.6118335930219,11.8558064416326,9.68080918192044,10.4517680607089,8.3699275489526,0.949058123089023,6.0938613247884,4.52403375840485,6.36660710531683,4.67913809085888,1.79763881730844,3.45820879799511,2.98711909881551,3.98302592001472,5.71242563048644,6.76246414038483,5.49858585182348,8.72786192254316,5.40045813155453,4.3000845244495,2.80459281161244,3.1399745568275,1.48076596706161,0,0.500535317148282,0.786235980452812,0,0.405720242777006,0,0,0.575392274901621,0.162135226775035,0.274561413188081,0,1.11642284300551,0.312037673114561,0.252578877947112,0.179397413521912,0,32.1470550889892,3.22135400009824,4.72598431681875,6.28056817368196,5.86725620721255,8.87783164441623,13.8065311713888,9.75668239288994,27.9014205067958,27.9045508957456,22.8020319180207,24.7433605220764,24.866637388689,24.87963807602,0,0,1.47529281905711,1.65562047782839,125.390010780466,121.900154055891,0,4.03953483526997,91.8128918501307,103.856705982906,126.884381264619,63.3267314574263,69.0675889655422,69.3537500432639,104.845971733798,125.670018901864,145.861190062267,253.843839973228,2.55492153374884,1.06839362200353,0.651547837414304,7.9185659026817,1.32745138339963,1.94224508923985,1.209294227859,1.32023555829129,0,3.3817866273832,2.32585463851399,2.18120237686503,2.85197902707777,3.16036757935816,0,1.03135543248187,17.0219802876894,6.30213829109586,2.32845630808958,2.7863814554107,4.61084607469911,3.21063871683727,8.06290200950393,3.34911444026059,9.62154003061212,1.48282449604674,3.74898276693435,6.76033637060068,8.55761461488299,5.97097956788743,2.626191568069,2.62625439592098,2.91480836629851,121.638998118894,1.36696704638282,0.412773735926445,1.48155621895769,0.188368457004691,0.956859594047176,0.686334519619568,0,0,0,2.86401185404534,4.9032079005076,8.53941761932765,5.83228840437727,7.52717865652087,5.02233896616208,4.04593039154462,4.46328660916814,2.6175594198403,4.01806417204558,1.24267862617385,0.56369293868419,2.99033092087958,1.48912641411388,2.52786544847262,1.80823752868824,3.04121025883401,1.17357238645754,1.69265700297135,1.78260885523708,0.483168241652012,1.15212002503146,1.89606672376907,1.41907650703115,0.616265742988964,0.129920822977795,0.895133478337407,0.596044064343795,0,0.295379054349154,1.11063094942962,1.21930890648,0.907435666231565,0.877120926657772,0.192423683280659,1.40252282617883,3.62768613784338,0,0,0,6.18206700903009,3.00291960721891,2.56412273974171,3.00115730710692,0,223.641729676358,216.352861158373,234.314264996713,203.989727441957,165.104887264725,168.452839117903,201.83172756931,195.439402199312,201.648371997971,185.358191607152,6.64239024538731,17.1580695562443,13.8294220660849,12.1553358534147,14.0440818960748,8.45680138870065,15.7795176739147,13.8043488350059,19.5760717851007,15.6672271293554,15.2087579934144,16.0332390178165,15.91905626988,17.3508163017196,16.5414150592166,18.5754539600399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| ||
|short_description=p1@Sgip1 | |short_description=p1@Sgip1 | ||
}} | }} |
Latest revision as of 01:51, 26 September 2015
Short description: | p1@Sgip1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Sgip1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000072481, ENSMUST00000080728, ENSMUST00000102775, ENSMUST00000106873, ENSMUST00000106879, ENSMUST00000136164, ENSMUST00000137592, ENSMUST00000140289, ENSMUST00000156596, NM_144906, uc008two.1_5end |
EntrezGene: | Sgip1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.24e-16 | 33 |
neuronal stem cell | 2.24e-16 | 33 |
neuroblast | 2.24e-16 | 33 |
electrically signaling cell | 2.24e-16 | 33 |
ectodermal cell | 6.54e-13 | 44 |
neurectodermal cell | 6.54e-13 | 44 |
neural cell | 7.27e-13 | 43 |
electrically responsive cell | 2.75e-12 | 39 |
electrically active cell | 2.75e-12 | 39 |
CNS neuron (sensu Vertebrata) | 2.97e-11 | 23 |
neuroblast (sensu Vertebrata) | 2.97e-11 | 23 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 7.57e-30 | 95 |
ectoderm | 7.57e-30 | 95 |
presumptive ectoderm | 7.57e-30 | 95 |
central nervous system | 1.43e-28 | 73 |
nervous system | 7.27e-28 | 75 |
neurectoderm | 1.93e-25 | 64 |
neural plate | 1.93e-25 | 64 |
presumptive neural plate | 1.93e-25 | 64 |
ecto-epithelium | 2.43e-24 | 73 |
regional part of nervous system | 1.27e-20 | 54 |
neural tube | 2.38e-19 | 52 |
neural rod | 2.38e-19 | 52 |
future spinal cord | 2.38e-19 | 52 |
neural keel | 2.38e-19 | 52 |
pre-chordal neural plate | 5.49e-19 | 49 |
gray matter | 5.58e-17 | 34 |
brain | 5.80e-17 | 47 |
future brain | 5.80e-17 | 47 |
structure with developmental contribution from neural crest | 2.87e-16 | 92 |
regional part of brain | 3.00e-16 | 46 |
anterior neural tube | 5.26e-15 | 40 |
brain grey matter | 1.55e-14 | 29 |
regional part of telencephalon | 1.55e-14 | 29 |
telencephalon | 1.55e-14 | 29 |
regional part of forebrain | 2.20e-14 | 39 |
forebrain | 2.20e-14 | 39 |
future forebrain | 2.20e-14 | 39 |
cerebral cortex | 1.08e-10 | 21 |
cerebral hemisphere | 1.08e-10 | 21 |
pallium | 1.08e-10 | 21 |
regional part of cerebral cortex | 4.00e-09 | 17 |
occipital lobe | 3.54e-08 | 10 |
visual cortex | 3.54e-08 | 10 |
neocortex | 3.54e-08 | 10 |