FFCP PHASE1:Mm9::chr10:52410302..52410360,+: Difference between revisions
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{{FFCP|EntrezGene=215085|HGNC=|MCL_coexpression_id=593|UniProt=Q8BGK5|association_with_transcript=0bp_to_ENSMUST00000105473,NM_178675,uc007fbk.2_5end|description=CAGE_peak_1_at_Slc35f1_5end|id=chr10:52410302..52410360,+|ontology_enrichment_celltype=CL:0000221!3.99e-21!44;CL:0000133!3.99e-21!44;CL:0002319!1.16e-20!43;CL:0000540!2.13e-19!33;CL:0000047!2.13e-19!33;CL:0000031!2.13e-19!33;CL:0000404!2.13e-19!33;CL:0000055!7.75e-15!50;CL:0000393!6.28e-14!39;CL:0000211!6.28e-14!39;CL:0000117!3.44e-13!23;CL:0000337!3.44e-13!23;CL:0000107!2.48e-07!9|ontology_enrichment_celltype_v019_2=CL:0000221,1.13e-21,44;CL:0000133,1.13e-21,44;CL:0002319,3.43e-21,43;CL:0000540,2.80e-20,33;CL:0000047,2.80e-20,33;CL:0000031,2.80e-20,33;CL:0000404,2.80e-20,33;CL:0000393,1.71e-14,39;CL:0000211,1.71e-14,39;CL:0000117,9.19e-14,23;CL:0000337,9.19e-14,23;CL:0000107,1.28e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.37e-35!75;UBERON:0001016!1.37e-35!75;UBERON:0001017!2.93e-35!73;UBERON:0005743!2.93e-35!73;UBERON:0004121!5.49e-34!102;UBERON:0000924!5.49e-34!102;UBERON:0006601!5.49e-34!102;UBERON:0002346!1.64e-26!71;UBERON:0003075!1.64e-26!71;UBERON:0007284!1.64e-26!71;UBERON:0000033!1.86e-23!63;UBERON:0001049!1.33e-22!52;UBERON:0005068!1.33e-22!52;UBERON:0006241!1.33e-22!52;UBERON:0007135!1.33e-22!52;UBERON:0000955!2.80e-21!50;UBERON:0006238!2.80e-21!50;UBERON:0002616!8.37e-21!49;UBERON:0003056!1.55e-20!49;UBERON:0002020!1.28e-18!34;UBERON:0003080!7.09e-18!40;UBERON:0002780!2.51e-17!39;UBERON:0001890!2.51e-17!39;UBERON:0006240!2.51e-17!39;UBERON:0002791!6.91e-16!29;UBERON:0003528!6.91e-16!29;UBERON:0001893!6.91e-16!29;UBERON:0000956!2.26e-11!21;UBERON:0001869!2.26e-11!21;UBERON:0000203!2.26e-11!21;UBERON:0000153!4.10e-11!94;UBERON:0007811!9.59e-11!86;UBERON:0002619!2.16e-09!17;UBERON:0000468!4.26e-09!333;UBERON:0002410!2.48e-07!9;UBERON:0000010!2.76e-07!11|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.80e-37,75;UBERON:0001017,1.74e-36,73;UBERON:0004121,4.96e-36,95;UBERON:0000924,4.96e-36,95;UBERON:0006601,4.96e-36,95;UBERON:0002346,1.38e-28,64;UBERON:0003075,1.38e-28,64;UBERON:0007284,1.38e-28,64;UBERON:0010371,1.55e-26,73;UBERON:0000073,2.11e-24,54;UBERON:0001049,3.07e-23,52;UBERON:0005068,3.07e-23,52;UBERON:0006241,3.07e-23,52;UBERON:0007135,3.07e-23,52;UBERON:0010314,3.37e-23,92;UBERON:0003056,1.79e-21,49;UBERON:0000955,3.41e-20,47;UBERON:0006238,3.41e-20,47;UBERON:0002616,1.05e-19,46;UBERON:0002020,1.84e-19,34;UBERON:0003080,1.11e-18,40;UBERON:0002780,4.19e-18,39;UBERON:0001890,4.19e-18,39;UBERON:0006240,4.19e-18,39;UBERON:0003528,1.36e-16,29;UBERON:0002791,1.36e-16,29;UBERON:0001893,1.36e-16,29;UBERON:0000956,7.44e-12,21;UBERON:0001869,7.44e-12,21;UBERON:0000203,7.44e-12,21;UBERON:0002619,8.87e-10,17;UBERON:0002410,1.28e-07,9;UBERON:0000010,1.44e-07,11|phase1_expression=8.48788889655408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.41928572495591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,12.6454590700659,11.8630538676615,16.1376816231655,6.99932108126813,15.8127820801469,0,0,0,2.05807548828758,0.286533439938757,0.515672092277442,49.1628999888823,49.7251520515711,57.0448263155561,3.04960078862219,0.889294796111139,0,0,0,9.58720353658895,13.831858991576,35.0470889602654,35.1015439662396,30.7074443573018,31.7072592688222,26.9459619960969,36.5022581660563,29.999632428708,45.041720543891,51.7544640697127,26.8143409978894,29.7996674517112,53.9414916816493,53.3372962202048,61.4677777256977,29.8725808931478,22.5105044012672,27.9620793431563,56.8633169964179,45.701309536512,35.7886935984577,3.63485727999283,13.5273092591146,0.869593466105033,0,0,0,0,0,1.68533304158102,0,0,0,28.3095273751128,0,0,0,0,0,0,1.1418387971906,0,2.22663208597237,2.25530924795977,6.69824052286711,3.45923245884088,3.76806601381556,3.64524992120685,0.879666139307728,0,1.59059292611903,0,5.50007289821191,1.54589062922275,0.484875253135222,0,17.2740670236813,13.6140359428746,0.510914110417183,0,0,0.127070227073065,39.9941007210877,58.5600771607842,44.2303319437283,50.930525816337,44.4944895754775,45.5055817585437,55.4865119691731,2.13862664085664,0.497627882440372,0.252722758433675,2.10441855886474,8.45782879257574,6.89706313300419,13.6847218652065,16.5775299619287,32.2493005977294,45.224143260552,40.3854432852431,14.2286853906459,2.58681591519411,4.9167580843633,9.85326295318113,8.76782929710299,8.34141747676794,3.48252166522167,7.40815691068596,1.99034266818493,0,0,0,1.03562886267751,3.51789089971644,1.62055855314913,2.60419209143731,2.75469924446365,2.77680803197281,3.72054311600653,3.75582761959467,2.80236821681207,3.45575684818309,2.95501435342371,2.10778904819225,1.46199987425332,1.3173006917463,1.8788898626452,24.1833440848746,47.747740143988,0,1.05780226665418,3.19932375802851,7.19933682767359,5.67016829817211,6.45387278794696,2.2237804384487,5.51654315726422,0.474529061544512,2.63518327558417,3.2673577144035,3.38226002469956,4.09424582950152,3.59527763461689,1.296828299248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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=215085 | |||
|HGNC= | |||
|MCL_coexpression_id=593 | |||
|TSSclassifier=NA | |||
|UniProt=Q8BGK5 | |||
|association_with_transcript=0bp_to_ENSMUST00000105473,NM_178675,uc007fbk.2_5end | |||
|cluster_id=chr10:52410302..52410360,+ | |||
|description=CAGE_peak_1_at_Slc35f1_5end | |||
|id=chr10:52410302..52410360,+ | |||
|ontology_enrichment_celltype=CL:0000221!3.99e-21!44;CL:0000133!3.99e-21!44;CL:0002319!1.16e-20!43;CL:0000540!2.13e-19!33;CL:0000047!2.13e-19!33;CL:0000031!2.13e-19!33;CL:0000404!2.13e-19!33;CL:0000055!7.75e-15!50;CL:0000393!6.28e-14!39;CL:0000211!6.28e-14!39;CL:0000117!3.44e-13!23;CL:0000337!3.44e-13!23;CL:0000107!2.48e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.13e-21,44;CL:0000133,1.13e-21,44;CL:0002319,3.43e-21,43;CL:0000540,2.80e-20,33;CL:0000047,2.80e-20,33;CL:0000031,2.80e-20,33;CL:0000404,2.80e-20,33;CL:0000393,1.71e-14,39;CL:0000211,1.71e-14,39;CL:0000117,9.19e-14,23;CL:0000337,9.19e-14,23;CL:0000107,1.28e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.37e-35!75;UBERON:0001016!1.37e-35!75;UBERON:0001017!2.93e-35!73;UBERON:0005743!2.93e-35!73;UBERON:0004121!5.49e-34!102;UBERON:0000924!5.49e-34!102;UBERON:0006601!5.49e-34!102;UBERON:0002346!1.64e-26!71;UBERON:0003075!1.64e-26!71;UBERON:0007284!1.64e-26!71;UBERON:0000033!1.86e-23!63;UBERON:0001049!1.33e-22!52;UBERON:0005068!1.33e-22!52;UBERON:0006241!1.33e-22!52;UBERON:0007135!1.33e-22!52;UBERON:0000955!2.80e-21!50;UBERON:0006238!2.80e-21!50;UBERON:0002616!8.37e-21!49;UBERON:0003056!1.55e-20!49;UBERON:0002020!1.28e-18!34;UBERON:0003080!7.09e-18!40;UBERON:0002780!2.51e-17!39;UBERON:0001890!2.51e-17!39;UBERON:0006240!2.51e-17!39;UBERON:0002791!6.91e-16!29;UBERON:0003528!6.91e-16!29;UBERON:0001893!6.91e-16!29;UBERON:0000956!2.26e-11!21;UBERON:0001869!2.26e-11!21;UBERON:0000203!2.26e-11!21;UBERON:0000153!4.10e-11!94;UBERON:0007811!9.59e-11!86;UBERON:0002619!2.16e-09!17;UBERON:0000468!4.26e-09!333;UBERON:0002410!2.48e-07!9;UBERON:0000010!2.76e-07!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.80e-37,75;UBERON:0001017,1.74e-36,73;UBERON:0004121,4.96e-36,95;UBERON:0000924,4.96e-36,95;UBERON:0006601,4.96e-36,95;UBERON:0002346,1.38e-28,64;UBERON:0003075,1.38e-28,64;UBERON:0007284,1.38e-28,64;UBERON:0010371,1.55e-26,73;UBERON:0000073,2.11e-24,54;UBERON:0001049,3.07e-23,52;UBERON:0005068,3.07e-23,52;UBERON:0006241,3.07e-23,52;UBERON:0007135,3.07e-23,52;UBERON:0010314,3.37e-23,92;UBERON:0003056,1.79e-21,49;UBERON:0000955,3.41e-20,47;UBERON:0006238,3.41e-20,47;UBERON:0002616,1.05e-19,46;UBERON:0002020,1.84e-19,34;UBERON:0003080,1.11e-18,40;UBERON:0002780,4.19e-18,39;UBERON:0001890,4.19e-18,39;UBERON:0006240,4.19e-18,39;UBERON:0003528,1.36e-16,29;UBERON:0002791,1.36e-16,29;UBERON:0001893,1.36e-16,29;UBERON:0000956,7.44e-12,21;UBERON:0001869,7.44e-12,21;UBERON:0000203,7.44e-12,21;UBERON:0002619,8.87e-10,17;UBERON:0002410,1.28e-07,9;UBERON:0000010,1.44e-07,11 | |||
|phase1_expression=8.48788889655408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.41928572495591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,12.6454590700659,11.8630538676615,16.1376816231655,6.99932108126813,15.8127820801469,0,0,0,2.05807548828758,0.286533439938757,0.515672092277442,49.1628999888823,49.7251520515711,57.0448263155561,3.04960078862219,0.889294796111139,0,0,0,9.58720353658895,13.831858991576,35.0470889602654,35.1015439662396,30.7074443573018,31.7072592688222,26.9459619960969,36.5022581660563,29.999632428708,45.041720543891,51.7544640697127,26.8143409978894,29.7996674517112,53.9414916816493,53.3372962202048,61.4677777256977,29.8725808931478,22.5105044012672,27.9620793431563,56.8633169964179,45.701309536512,35.7886935984577,3.63485727999283,13.5273092591146,0.869593466105033,0,0,0,0,0,1.68533304158102,0,0,0,28.3095273751128,0,0,0,0,0,0,1.1418387971906,0,2.22663208597237,2.25530924795977,6.69824052286711,3.45923245884088,3.76806601381556,3.64524992120685,0.879666139307728,0,1.59059292611903,0,5.50007289821191,1.54589062922275,0.484875253135222,0,17.2740670236813,13.6140359428746,0.510914110417183,0,0,0.127070227073065,39.9941007210877,58.5600771607842,44.2303319437283,50.930525816337,44.4944895754775,45.5055817585437,55.4865119691731,2.13862664085664,0.497627882440372,0.252722758433675,2.10441855886474,8.45782879257574,6.89706313300419,13.6847218652065,16.5775299619287,32.2493005977294,45.224143260552,40.3854432852431,14.2286853906459,2.58681591519411,4.9167580843633,9.85326295318113,8.76782929710299,8.34141747676794,3.48252166522167,7.40815691068596,1.99034266818493,0,0,0,1.03562886267751,3.51789089971644,1.62055855314913,2.60419209143731,2.75469924446365,2.77680803197281,3.72054311600653,3.75582761959467,2.80236821681207,3.45575684818309,2.95501435342371,2.10778904819225,1.46199987425332,1.3173006917463,1.8788898626452,24.1833440848746,47.747740143988,0,1.05780226665418,3.19932375802851,7.19933682767359,5.67016829817211,6.45387278794696,2.2237804384487,5.51654315726422,0.474529061544512,2.63518327558417,3.2673577144035,3.38226002469956,4.09424582950152,3.59527763461689,1.29682829924817,0.995706366271836,3.98302592001472,4.56994050438915,6.76246414038483,4.88763186828754,4.26695471768777,3.22624771495465,4.80597682144355,2.65698266363284,2.04098346193787,1.23397163921801,0,0.333690211432188,0.786235980452812,0.449724224769707,0,0,0,0,0.162135226775035,0,1.43768206527355,0,0.624075346229121,0,0.538192240565737,0,0.184753190166605,1.51593129416388,1.95557971730431,3.22515662972857,1.64283173801951,1.67506257441816,0.952174563544055,0.780534591431195,0.472905432318573,0.664394068946325,0.637819074629948,1.47476983244164,0.518054945597687,0.289298117163023,0,0,0,0.551873492609465,25.6880943980467,27.4275346625755,0,3.02965112645248,44.8021671571084,56.6136179230126,57.9488939901229,60.4591058819957,54.5856751501866,55.1999235038223,55.8638768311354,53.4828219977701,55.3402889125133,29.2402397943844,2.6968616189571,1.78065603667255,1.95464351224291,0.329940245945071,0,2.42780636154981,2.11626489875326,0.943025398779491,0.885905678642318,4.91896236710284,3.6179961043551,1.81766864738753,2.85197902707777,1.58018378967908,0,1.03135543248187,5.7874732978144,6.48219938512717,5.82114077022395,6.43011105094777,8.86701168211368,8.56170324489939,7.24015690649332,4.26250928760439,0,0,1.32317038832977,1.97863503529776,2.74489525383039,3.86002719540197,3.22305328808468,3.11867709515616,2.33184669303881,32.6348531538497,0,1.44470807574256,0.740778109478847,0.376736914009382,0.136694227721025,0.228778173206523,0,0,0.276399947608848,0.954670618015114,4.74503990371703,4.87966721104437,5.50827238191186,2.71814784818809,5.45906409365444,4.45052343069908,6.11635572367486,3.14107130380836,0.777689839750757,0,0,1.79419855252775,0.330916980914195,1.16670713006429,1.03327858782185,1.01373675294467,1.87771581833206,2.21347454234715,0.104859344425711,0,0.288030006257865,0,2.43270258348197,1.64337531463724,0.649604114888975,1.25318686967237,0.39736270956253,0.721172697119813,0.295379054349154,0.908698049533329,0.533447646584999,0.302478555410522,0.38983152295901,0,0.116876902181569,2.26730383615211,0.221985953374065,0,0,2.89784391048286,0.187682475451182,0.183151624267265,0.214368379079066,0.501572104035363,44.0506437241312,35.4450432110526,38.956894913879,36.7765810215491,34.9392085083028,40.7912704590438,41.1763725141402,42.3301931030767,40.3296743995942,39.3497836931383,3.21740777510948,16.3600198094423,15.1952909121179,16.2881500435757,9.22297915563122,6.06683577885047,9.33436256766784,11.1258930909003,9.62757628775446,10.6132828940795,12.1670063947315,10.1858224348481,10.3942073291569,11.268426823257,11.0276100394777,12.3836359733599,12.051969898265,11.3816440073586,11.9504911232959,9.42073088860143,8.57173130963539,9.40621772644489,9.77588378784016,12.3544454137479,10.257922465271,12.1845035364014,8.59761472502031,8.15516105457313,13.0371949292027,8.41713407486608,11.2703267217965,9.55493479042966,9.8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| |||
|short_description=p1@Slc35f1 | |||
}} |
Latest revision as of 02:01, 26 September 2015
Short description: | p1@Slc35f1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Slc35f1_5end |
Coexpression cluster: | MCL_coexpression_mm9:593 |
Association with transcript: | 0bp_to_ENSMUST00000105473, NM_178675, uc007fbk.2_5end |
EntrezGene: | Slc35f1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.13e-21 | 44 |
neurectodermal cell | 1.13e-21 | 44 |
neural cell | 3.43e-21 | 43 |
neuron | 2.80e-20 | 33 |
neuronal stem cell | 2.80e-20 | 33 |
neuroblast | 2.80e-20 | 33 |
electrically signaling cell | 2.80e-20 | 33 |
electrically responsive cell | 1.71e-14 | 39 |
electrically active cell | 1.71e-14 | 39 |
CNS neuron (sensu Vertebrata) | 9.19e-14 | 23 |
neuroblast (sensu Vertebrata) | 9.19e-14 | 23 |
autonomic neuron | 1.28e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
nervous system | 7.80e-37 | 75 |
central nervous system | 1.74e-36 | 73 |
ectoderm-derived structure | 4.96e-36 | 95 |
ectoderm | 4.96e-36 | 95 |
presumptive ectoderm | 4.96e-36 | 95 |
neurectoderm | 1.38e-28 | 64 |
neural plate | 1.38e-28 | 64 |
presumptive neural plate | 1.38e-28 | 64 |
ecto-epithelium | 1.55e-26 | 73 |
regional part of nervous system | 2.11e-24 | 54 |
neural tube | 3.07e-23 | 52 |
neural rod | 3.07e-23 | 52 |
future spinal cord | 3.07e-23 | 52 |
neural keel | 3.07e-23 | 52 |
structure with developmental contribution from neural crest | 3.37e-23 | 92 |
pre-chordal neural plate | 1.79e-21 | 49 |
brain | 3.41e-20 | 47 |
future brain | 3.41e-20 | 47 |
regional part of brain | 1.05e-19 | 46 |
gray matter | 1.84e-19 | 34 |
anterior neural tube | 1.11e-18 | 40 |
regional part of forebrain | 4.19e-18 | 39 |
forebrain | 4.19e-18 | 39 |
future forebrain | 4.19e-18 | 39 |
brain grey matter | 1.36e-16 | 29 |
regional part of telencephalon | 1.36e-16 | 29 |
telencephalon | 1.36e-16 | 29 |
cerebral cortex | 7.44e-12 | 21 |
cerebral hemisphere | 7.44e-12 | 21 |
pallium | 7.44e-12 | 21 |
regional part of cerebral cortex | 8.87e-10 | 17 |
autonomic nervous system | 1.28e-07 | 9 |
peripheral nervous system | 1.44e-07 | 11 |