FFCP PHASE1:Mm9::chr17:25377057..25377103,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:25377057..25377103,-
|short_description=p1@Gnptg,p1@LOC100047632,p1@LOC100505011
|description=CAGE_peak_1_at_Gnptg_5end,CAGE_peak_1_at_LOC100047632_5end,CA...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=100047632,100505011,214505 | |EntrezGene=100047632,100505011,214505 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=414 | |||
|TSSclassifier=NA | |||
|UniProt=Q6S5C2,E9Q9H7 | |UniProt=Q6S5C2,E9Q9H7 | ||
|association_with_transcript=0bp_to_ENSMUST00000038973,ENSMUST00000115154,NM_172529,uc008bab.1,uc008bac.1,uc008bad.1,uc008bae.1_5end | |||
|cluster_id=chr17:25377057..25377103,- | |||
|description=CAGE_peak_1_at_Gnptg_5end,CAGE_peak_1_at_LOC100047632_5end,CAGE_peak_1_at_LOC100505011_5end | |||
|id=chr17:25377057..25377103,- | |||
|ontology_enrichment_celltype=CL:0000055!7.60e-14!50;CL:0000221!3.18e-12!44;CL:0000133!3.18e-12!44;CL:0002319!3.87e-12!43;CL:0002321!1.43e-11!70;CL:0000220!1.43e-11!70;CL:0000117!2.12e-10!23;CL:0000337!2.12e-10!23;CL:0000393!3.62e-10!39;CL:0000211!3.62e-10!39;CL:0000540!5.74e-09!33;CL:0000047!5.74e-09!33;CL:0000031!5.74e-09!33;CL:0000404!5.74e-09!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,3.18e-12,44;CL:0000133,3.18e-12,44;CL:0002319,3.87e-12,43;CL:0002321,1.43e-11,70;CL:0000117,2.12e-10,23;CL:0000337,2.12e-10,23;CL:0000393,3.62e-10,39;CL:0000211,3.62e-10,39;CL:0000540,5.74e-09,33;CL:0000047,5.74e-09,33;CL:0000031,5.74e-09,33;CL:0000404,5.74e-09,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!7.26e-29!75;UBERON:0001016!7.26e-29!75;UBERON:0001017!3.39e-28!73;UBERON:0005743!3.39e-28!73;UBERON:0004121!5.96e-27!102;UBERON:0000924!5.96e-27!102;UBERON:0006601!5.96e-27!102;UBERON:0001049!2.07e-24!52;UBERON:0005068!2.07e-24!52;UBERON:0006241!2.07e-24!52;UBERON:0007135!2.07e-24!52;UBERON:0000955!4.27e-24!50;UBERON:0006238!4.27e-24!50;UBERON:0000033!5.09e-24!63;UBERON:0002616!2.06e-23!49;UBERON:0002346!2.37e-22!71;UBERON:0003075!2.37e-22!71;UBERON:0007284!2.37e-22!71;UBERON:0003080!5.74e-18!40;UBERON:0002780!2.10e-17!39;UBERON:0001890!2.10e-17!39;UBERON:0006240!2.10e-17!39;UBERON:0003056!2.12e-17!49;UBERON:0002020!4.93e-16!34;UBERON:0007811!9.79e-16!86;UBERON:0002791!1.11e-13!29;UBERON:0003528!1.11e-13!29;UBERON:0001893!1.11e-13!29;UBERON:0000153!4.37e-11!94;UBERON:0000475!7.50e-11!200;UBERON:0000956!7.56e-10!21;UBERON:0001869!7.56e-10!21;UBERON:0000203!7.56e-10!21;UBERON:0004111!1.61e-09!122;UBERON:0000480!8.45e-09!308;UBERON:0000467!8.45e-09!308;UBERON:0002619!9.00e-09!17;UBERON:0000025!2.89e-08!114;UBERON:0007023!9.94e-08!51;UBERON:0000119!3.72e-07!183;UBERON:0003076!4.82e-07!12;UBERON:0003057!4.82e-07!12;UBERON:0000483!6.35e-07!181 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.26e-29,75;UBERON:0001017,3.39e-28,73;UBERON:0004121,3.66e-27,95;UBERON:0000924,3.66e-27,95;UBERON:0006601,3.66e-27,95;UBERON:0000073,4.92e-26,54;UBERON:0001049,2.07e-24,52;UBERON:0005068,2.07e-24,52;UBERON:0006241,2.07e-24,52;UBERON:0007135,2.07e-24,52;UBERON:0002346,4.81e-23,64;UBERON:0003075,4.81e-23,64;UBERON:0007284,4.81e-23,64;UBERON:0000955,5.31e-22,47;UBERON:0006238,5.31e-22,47;UBERON:0002616,2.48e-21,46;UBERON:0010371,1.84e-20,73;UBERON:0003080,5.74e-18,40;UBERON:0002780,2.10e-17,39;UBERON:0001890,2.10e-17,39;UBERON:0006240,2.10e-17,39;UBERON:0003056,2.12e-17,49;UBERON:0002020,4.93e-16,34;UBERON:0003528,1.11e-13,29;UBERON:0002791,1.11e-13,29;UBERON:0001893,1.11e-13,29;UBERON:0010314,3.04e-11,92;UBERON:0000956,7.56e-10,21;UBERON:0001869,7.56e-10,21;UBERON:0000203,7.56e-10,21;UBERON:0011216,1.42e-09,194;UBERON:0004111,1.61e-09,122;UBERON:0002619,9.00e-09,17;UBERON:0000025,2.89e-08,114;UBERON:0007023,9.94e-08,51;UBERON:0003076,4.82e-07,12;UBERON:0003057,4.82e-07,12;UBERON:0000119,8.63e-07,176 | |||
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|phase1_expression=34.7522998217403,30.3608604646244,29.1199513209303,32.6661348211376,27.5492651470491,21.4885468047219,22.4268134971705,14.8491821957813,25.3419699873,10.0647746318457,33.7299397404245,16.2735204350486,32.8705401467915,26.4009615305372,12.3250611871795,14.9831697868471,15.3903613188192,20.0318475002481,19.1960207048034,25.4633791078818,45.2430303603691,23.4326644834089,23.5079810225042,30.5585527535407,35.099620003277,33.3054539186712,31.4456257196125,21.9780657339607,48.265948541919,28.983464922392,32.1509240450192,14.6057054895715,13.5314253268605,0,22.8192779603507,20.94556531517,22.662798545123,33.0639988282157,27.346737058333,17.7998072951091,25.2939539853336,30.0540013381716,36.4132764773365,74.6568130595173,71.7748673034163,51.0259971009475,62.5913075478431,66.9337230087971,58.8758969728384,81.0772679139762,34.4366597198392,37.3756667348926,23.8251300601986,39.1695556686126,52.7667264653668,25.4686841675588,36.9628137520996,45.3791441204149,64.3366345533521,70.8847912224524,57.0448263155561,35.5786758672589,32.9039074561122,67.4924787961049,88.0091062684607,66.0746506899873,55.7256205564233,95.2861397197455,44.8976021295708,48.0621140460819,46.6921414200068,86.8378992587563,77.5248578740163,49.1188104851966,48.0185809801364,63.4260962760914,88.092704799511,92.9563821260167,96.0040832851522,66.2069164405573,57.9116784003253,54.174990537903,103.01852663151,91.7303054351638,85.1086240116832,75.1302892957853,65.06385812519,59.6478226640962,55.0529425532248,48.0635122279156,23.7688880735376,70.5547579124737,58.4775346988665,61.5261638467112,69.5260766669006,52.8671726774856,42.9759925603161,30.5070277414723,37.9287566720188,36.393976174565,36.1967588826069,48.7640614174408,35.6727335589304,49.7746692207332,14.9378818297738,17.2284708523067,13.6491600153991,43.6182420526809,15.018397251536,46.3139473882253,21.1652098654686,26.4884966131563,27.9044751679831,39.4893318247871,26.8102252269407,31.9193141977376,42.2703394825779,19.665512541108,27.4229271104461,15.3678507450039,17.2256384399107,19.3950101254089,18.6391761218122,105.108306127145,95.9265917205624,34.2312453979512,11.8616973260861,20.3966928537759,13.9777249780371,81.4861078362236,102.022634428554,58.9318911409334,93.1698356230602,98.9618819868379,79.7906091108711,94.0999325792994,19.1458004038595,25.379022004459,55.3462840969748,57.6610685128939,21.8602344177342,25.749035696549,23.9482632641114,28.9353250244573,37.2159650357763,33.0533398334912,40.3854432852431,56.9147415625834,11.2095356325078,9.8335161687266,10.0292140773451,18.6316372563439,19.1852601965663,13.2335823278423,19.9608672315705,18.7092210809384,22.4708219940235,15.4408744268829,21.3122624546694,12.4275463521301,14.0715635988658,13.6847166710371,14.4414288706978,12.3961466000864,9.87309522479221,11.8592311822708,10.7309360559848,12.2603609485528,12.671108443338,14.6109043030395,15.4030738137126,16.3743985916372,15.5880581856646,18.5204857889313,78.6484407629836,45.8954571211609,54.1886804093429,30.9407162996347,13.2238715331845,16.0243303583703,14.5620231293965,13.5127961497639,20.4587800337281,27.202264534096,29.8953308773042,30.139908714494,37.4489461112402,30.6392966943372,30.0244694163445,18.8752075817387,24.2074615859658,28.4772020753745,18.3977863924489,15.4235492023134,14.6520056375005,18.9395734896142,25.407775818959,32.6131562489981,59.0629256740563,84.4330046443324,70.80642625646,88.1055750401656,53.6579255027739,13.8481437744358,17.8868685553015,14.3911751926306,14.2002084971952,16.8824011826692,17.8238096246994,21.8649064462616,17.9970101720289,27.1815799056201,14.3768206527355,26.4220072844637,28.0833905803105,30.8146231095476,35.1618930502948,50.1741262217902,50.2528677253165,13.4538902357044,16.1335326677606,14.428332290891,18.0711491182147,18.9282070909252,29.0413241880937,28.4895125872386,28.847231371433,29.0118743439895,28.0640392837177,43.751505029102,44.3800403395352,49.6146270934585,28.6503439484617,16.86107619838,58.0281842162463,40.2867649604909,79.3119914539692,77.3597131508541,16.0656246469142,28.2767438468898,25.2406575533005,24.9880796349849,29.7284288871263,24.8527549870654,32.0830090678648,28.3076530788832,28.3367491172426,33.0249119439782,33.994748903401,90.2912899145278,19.1619115031163,19.2310851960636,16.4515828947112,26.7251599215507,91.5941454545744,24.7636248878081,27.8137672407571,41.6817226260535,51.0872274683737,47.6524479313088,27.1349707826632,37.8075078656606,38.8582142439346,58.466800218126,74.8472120882491,89.7279226259226,148.091228502898,26.2889197285713,38.1608117159126,41.1527107260657,65.0838657467144,72.9528463992469,79.8062749920287,84.336790904744,26.5179030111993,48.7213762986786,64.3942922320489,18.6321465823872,19.0528023501169,16.2241768056739,21.009532544552,20.6817533678777,24.4843902769075,71.2033159720357,22.8966980269123,18.57481811669,14.2599786074678,13.9392658183471,11.8923978117292,13.2691340459783,20.5673900292565,18.6135431590465,15.340197092291,40.0961659566348,16.7658076598002,16.2655573701479,15.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| ||
|short_description=p1@Gnptg,p1@LOC100047632,p1@LOC100505011 | |||
}} | }} |
Latest revision as of 02:17, 26 September 2015
Short description: | p1@Gnptg, p1@LOC100047632, p1@LOC100505011 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gnptg_5end, CAGE_peak_1_at_LOC100047632_5end, CAGE_peak_1_at_LOC100505011_5end |
Coexpression cluster: | MCL_coexpression_mm9:414 |
Association with transcript: | 0bp_to_ENSMUST00000038973, ENSMUST00000115154, NM_172529, uc008bab.1, uc008bac.1, uc008bad.1, uc008bae.1_5end |
EntrezGene: | 100047632,100505011,214505 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 3.18e-12 | 44 |
neurectodermal cell | 3.18e-12 | 44 |
neural cell | 3.87e-12 | 43 |
embryonic cell | 1.43e-11 | 70 |
CNS neuron (sensu Vertebrata) | 2.12e-10 | 23 |
neuroblast (sensu Vertebrata) | 2.12e-10 | 23 |
electrically responsive cell | 3.62e-10 | 39 |
electrically active cell | 3.62e-10 | 39 |
neuron | 5.74e-09 | 33 |
neuronal stem cell | 5.74e-09 | 33 |
neuroblast | 5.74e-09 | 33 |
electrically signaling cell | 5.74e-09 | 33 |