FFCP PHASE1:Mm9::chr4:107353508..107353547,-: Difference between revisions
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|id=chr4:107353508..107353547,-
|short_description=p4@Dmrtb1
|description=CAGE_peak_4_at_Dmrtb1_5end
|association_with_transcript=17bp_to_ENSMUST00000131508_5end
|...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=56296 | |EntrezGene=56296 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=141 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=17bp_to_ENSMUST00000131508_5end | |||
|cluster_id=chr4:107353508..107353547,- | |||
|description=CAGE_peak_4_at_Dmrtb1_5end | |||
|id=chr4:107353508..107353547,- | |||
|ontology_enrichment_celltype=CL:0000117!2.12e-22!23;CL:0000337!2.12e-22!23;CL:0002319!8.94e-17!43;CL:0000221!3.25e-16!44;CL:0000133!3.25e-16!44;CL:0000540!1.05e-13!33;CL:0000047!1.05e-13!33;CL:0000031!1.05e-13!33;CL:0000404!1.05e-13!33;CL:0000055!2.47e-13!50;CL:0000393!1.11e-10!39;CL:0000211!1.11e-10!39;CL:0002321!1.89e-07!70;CL:0000220!1.89e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.44e-22,23;CL:0000337,1.44e-22,23;CL:0002319,5.57e-16,43;CL:0000221,1.44e-15,44;CL:0000133,1.44e-15,44;CL:0002613,3.29e-15,3;CL:0000540,3.30e-15,33;CL:0000047,3.30e-15,33;CL:0000031,3.30e-15,33;CL:0000404,3.30e-15,33;CL:0000120,8.53e-15,3;CL:0002612,1.01e-13,3;CL:0000393,1.34e-12,39;CL:0000211,1.34e-12,39;CL:0000878,5.72e-10,2;CL:0000129,5.72e-10,2;CL:0002321,5.55e-09,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!5.42e-18!75;UBERON:0001016!5.42e-18!75;UBERON:0001017!1.07e-17!73;UBERON:0005743!1.07e-17!73;UBERON:0001049!1.76e-15!52;UBERON:0005068!1.76e-15!52;UBERON:0006241!1.76e-15!52;UBERON:0007135!1.76e-15!52;UBERON:0002020!3.29e-14!34;UBERON:0004121!1.04e-12!102;UBERON:0000924!1.04e-12!102;UBERON:0006601!1.04e-12!102;UBERON:0002616!2.48e-12!49;UBERON:0000955!6.10e-12!50;UBERON:0006238!6.10e-12!50;UBERON:0002346!1.24e-11!71;UBERON:0003075!1.24e-11!71;UBERON:0007284!1.24e-11!71;UBERON:0003080!2.20e-11!40;UBERON:0003056!6.19e-11!49;UBERON:0002780!1.59e-10!39;UBERON:0001890!1.59e-10!39;UBERON:0006240!1.59e-10!39;UBERON:0000033!1.85e-10!63;UBERON:0002791!3.95e-09!29;UBERON:0003528!3.95e-09!29;UBERON:0001893!3.95e-09!29;UBERON:0001948!4.75e-08!5;UBERON:0002315!4.75e-08!5;UBERON:0002420!7.11e-07!8;UBERON:0007245!7.11e-07!8;UBERON:0010009!7.11e-07!8;UBERON:0010011!7.11e-07!8;UBERON:0000454!7.11e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000369,1.25e-15,5;UBERON:0002435,1.25e-15,5;UBERON:0000204,1.25e-15,5;UBERON:0010082,1.25e-15,5;UBERON:0002257,1.01e-13,3;UBERON:0001017,4.45e-10,73;UBERON:0002420,8.11e-10,8;UBERON:0007245,8.11e-10,8;UBERON:0010009,8.11e-10,8;UBERON:0010011,8.11e-10,8;UBERON:0000454,8.11e-10,8;UBERON:0001016,9.56e-10,75;UBERON:0001948,1.93e-08,5;UBERON:0002315,1.93e-08,5;UBERON:0002020,1.27e-07,34;UBERON:0004121,3.42e-07,95;UBERON:0000924,3.42e-07,95;UBERON:0006601,3.42e-07,95;UBERON:0002240,4.13e-07,6;UBERON:0005174,4.13e-07,6;UBERON:0001137,4.13e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436050312760893,0.219686182734472,0,0.139986421625363,0,0,0,0,0,0,0,5.86717736492834,10.0508286061686,6.33831403506179,0,0,0,0,0,2.09720077362883,2.30530983192933,0.414758449233911,0.405017814995072,0.210324961351382,0.856952953211411,0.662605622854841,0.734944795289724,1.91690942036473,0,2.20231761998777,0,0.153606533256243,26.7729164092293,31.929187617241,29.1711487511786,0,0.56276261003168,0.30559649555362,1.17851434189467,1.42371680799103,2.42319279572891,0,0.151143120213571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599162557619291,0,2.89005009859588,0,0,0.20778804455956,0.486723789203273,0,0,0,0,0,0,0.180062129805349,0.150704817835715,0,0,0.187403449119458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.617427674275707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0.388076051348264,0,0,0.178368817602071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0.460325236507177,0,0,0,0.755393897389701,0,0,0,0,1.3492355185943,0.798049746802062,1.36586884603307,0.486213434136588,1.25767897576789,0.551530525350042,0.222246727801615,0.618105171716683,0.320919209591815,1.01078884705519,0,0.188626341386076,0.468207537349412,0.192075457214608,0.287177344778066,0,0.231768651889711,0,0,0.294397840268795,0,0.177475806159338,0.476872379894642,0.872078499793971,0,0.25384382367503,0.182927972872773,0,0.407412341537585,1.12228454331548,0.118635018124174,0.0985044823755635,0,0.309873682371932,0,1.24905288968973,0,0.429742108096597,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436050312760893,0.219686182734472,0,0.139986421625363,0,0,0,0,0,0,0,5.86717736492834,10.0508286061686,6.33831403506179,0,0,0,0,0,2.09720077362883,2.30530983192933,0.414758449233911,0.405017814995072,0.210324961351382,0.856952953211411,0.662605622854841,0.734944795289724,1.91690942036473,0,2.20231761998777,0,0.153606533256243,26.7729164092293,31.929187617241,29.1711487511786,0,0.56276261003168,0.30559649555362,1.17851434189467,1.42371680799103,2.42319279572891,0,0.151143120213571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599162557619291,0,2.89005009859588,0,0,0.20778804455956,0.486723789203273,0,0,0,0,0,0,0.180062129805349,0.150704817835715,0,0,0.187403449119458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.617427674275707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0.388076051348264,0,0,0.178368817602071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0.460325236507177,0,0,0,0.755393897389701,0,0,0,0,1.3492355185943,0.798049746802062,1.36586884603307,0.486213434136588,1.25767897576789,0.551530525350042,0.222246727801615,0.618105171716683,0.320919209591815,1.01078884705519,0,0.188626341386076,0.468207537349412,0.192075457214608,0.287177344778066,0,0.231768651889711,0,0,0.294397840268795,0,0.177475806159338,0.476872379894642,0.872078499793971,0,0.25384382367503,0.182927972872773,0,0.407412341537585,1.12228454331548,0.118635018124174,0.0985044823755635,0,0.309873682371932,0,1.24905288968973,0,0.429742108096597,0,0,0 | ||
|short_description=p4@Dmrtb1 | |||
}} | }} |
Latest revision as of 03:03, 26 September 2015
Short description: | p4@Dmrtb1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Dmrtb1_5end |
Coexpression cluster: | MCL_coexpression_mm9:141 |
Association with transcript: | 17bp_to_ENSMUST00000131508_5end |
EntrezGene: | Dmrtb1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.44e-22 | 23 |
neuroblast (sensu Vertebrata) | 1.44e-22 | 23 |
neural cell | 5.57e-16 | 43 |
ectodermal cell | 1.44e-15 | 44 |
neurectodermal cell | 1.44e-15 | 44 |
striatum neuron | 3.29e-15 | 3 |
neuron | 3.30e-15 | 33 |
neuronal stem cell | 3.30e-15 | 33 |
neuroblast | 3.30e-15 | 33 |
electrically signaling cell | 3.30e-15 | 33 |
granule cell | 8.53e-15 | 3 |
neuron of the ventral spinal cord | 1.01e-13 | 3 |
electrically responsive cell | 1.34e-12 | 39 |
electrically active cell | 1.34e-12 | 39 |
central nervous system macrophage | 5.72e-10 | 2 |
microglial cell | 5.72e-10 | 2 |
embryonic cell | 5.55e-09 | 70 |
Ontology term | p-value | n |
---|---|---|
corpus striatum | 1.25e-15 | 5 |
striatum | 1.25e-15 | 5 |
ventral part of telencephalon | 1.25e-15 | 5 |
future corpus striatum | 1.25e-15 | 5 |
ventral horn of spinal cord | 1.01e-13 | 3 |
central nervous system | 4.45e-10 | 73 |
basal ganglion | 8.11e-10 | 8 |
nuclear complex of neuraxis | 8.11e-10 | 8 |
aggregate regional part of brain | 8.11e-10 | 8 |
collection of basal ganglia | 8.11e-10 | 8 |
cerebral subcortex | 8.11e-10 | 8 |
nervous system | 9.56e-10 | 75 |
regional part of spinal cord | 1.93e-08 | 5 |
gray matter of spinal cord | 1.93e-08 | 5 |
gray matter | 1.27e-07 | 34 |
ectoderm-derived structure | 3.42e-07 | 95 |
ectoderm | 3.42e-07 | 95 |
presumptive ectoderm | 3.42e-07 | 95 |
spinal cord | 4.13e-07 | 6 |
dorsal region element | 4.13e-07 | 6 |
dorsum | 4.13e-07 | 6 |