FFCP PHASE1:Mm9::chr2:166888481..166888548,-: Difference between revisions
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{{FFCP|EntrezGene=98999|HGNC=|MCL_coexpression_id=376|UniProt=Q8R151,A2A5R4|association_with_transcript=0bp_to_ENSMUST00000048988,NM_001033196,uc008nzc.1,uc008nze.1_5end|description=CAGE_peak_3_at_Znfx1_5end|id=chr2:166888481..166888548,-|ontology_enrichment_celltype=CL:0000117!2.01e-12!23;CL:0000337!2.01e-12!23;CL:0000540!1.87e-08!33;CL:0000047!1.87e-08!33;CL:0000031!1.87e-08!33;CL:0000404!1.87e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,8.38e-13,23;CL:0000337,8.38e-13,23;CL:0000540,1.58e-08,33;CL:0000047,1.58e-08,33;CL:0000031,1.58e-08,33;CL:0000404,1.58e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!4.03e-21!63;UBERON:0001049!2.89e-20!52;UBERON:0005068!2.89e-20!52;UBERON:0006241!2.89e-20!52;UBERON:0007135!2.89e-20!52;UBERON:0003056!5.59e-20!49;UBERON:0002346!3.85e-19!71;UBERON:0003075!3.85e-19!71;UBERON:0007284!3.85e-19!71;UBERON:0001017!7.64e-19!73;UBERON:0005743!7.64e-19!73;UBERON:0000955!8.95e-19!50;UBERON:0006238!8.95e-19!50;UBERON:0002616!1.98e-18!49;UBERON:0000153!8.85e-18!94;UBERON:0000073!3.02e-17!75;UBERON:0001016!3.02e-17!75;UBERON:0003080!1.15e-16!40;UBERON:0007811!1.42e-16!86;UBERON:0002020!3.11e-16!34;UBERON:0002780!3.53e-16!39;UBERON:0001890!3.53e-16!39;UBERON:0006240!3.53e-16!39;UBERON:0004121!4.54e-15!102;UBERON:0000924!4.54e-15!102;UBERON:0006601!4.54e-15!102;UBERON:0002791!2.24e-13!29;UBERON:0003528!2.24e-13!29;UBERON:0001893!2.24e-13!29;UBERON:0000956!2.86e-10!21;UBERON:0001869!2.86e-10!21;UBERON:0000203!2.86e-10!21;UBERON:0002619!2.60e-08!17;UBERON:0002021!2.70e-07!10;UBERON:0000411!2.70e-07!10;UBERON:0001950!2.70e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.65e-22,64;UBERON:0003075,2.65e-22,64;UBERON:0007284,2.65e-22,64;UBERON:0000073,7.42e-22,54;UBERON:0001049,1.18e-20,52;UBERON:0005068,1.18e-20,52;UBERON:0006241,1.18e-20,52;UBERON:0007135,1.18e-20,52;UBERON:0003056,1.27e-20,49;UBERON:0001017,7.46e-19,73;UBERON:0010371,1.75e-18,73;UBERON:0010314,6.65e-18,92;UBERON:0000955,1.64e-17,47;UBERON:0006238,1.64e-17,47;UBERON:0001016,2.33e-17,75;UBERON:0003080,3.42e-17,40;UBERON:0002616,3.66e-17,46;UBERON:0002020,9.57e-17,34;UBERON:0002780,1.09e-16,39;UBERON:0001890,1.09e-16,39;UBERON:0006240,1.09e-16,39;UBERON:0004121,2.68e-16,95;UBERON:0000924,2.68e-16,95;UBERON:0006601,2.68e-16,95;UBERON:0003528,8.66e-14,29;UBERON:0002791,8.66e-14,29;UBERON:0001893,8.66e-14,29;UBERON:0000956,1.42e-10,21;UBERON:0001869,1.42e-10,21;UBERON:0000203,1.42e-10,21;UBERON:0002619,1.51e-08,17;UBERON:0002021,1.70e-07,10;UBERON:0000411,1.70e-07,10;UBERON:0001950,1.70e-07,10|phase1_expression=2.5623815536767,0,0,0.60492842261366,1.00179145989269,0.33575854382378,0.467225281191051,1.54947988129892,1.40788722151667,0.70219357896598,1.36974374580404,1.59544317990673,2.73921167889929,1.66098764596095,0,0.809901069559304,0,1.41957974411207,2.74228867211478,0.84877930359606,3.74190476664707,1.48936426801328,0.522399578277871,0.799962113967033,0.45881856213434,1.72269589234506,0.86152399231815,0.861884930743556,0.760093677825496,0.252030129759931,0.443461021310609,0.635030673459631,3.07532393792285,15.8481681015439,0.866554859253824,0.664938581433969,0.612508068787107,0.418531630736908,0.7813353445238,0.523523743973798,0,0,0,0.377690453926732,0.304130793658544,0.183546752161682,1.56478268869608,0.872100625521786,1.31811709640683,1.55543919259427,0.839918529752175,4.31257693094915,3.35565212115473,6.5282592781021,6.38578218370682,0.257259436035947,0.85960031981627,0,12.3413041124355,11.1088105647127,11.4089652631112,0,0,0.449949858640699,0.988866362566974,0,0.898800331555214,0,4.45865332926454,5.8052553482627,5.25812403378455,7.14127461009509,3.97563373712904,4.04219637409348,6.3258010872036,9.19218786610021,8.8092704799511,4.46905683298157,4.6081959976873,9.10015385338338,6.95306091378313,6.77187381723788,4.4669279840221,2.25105044012672,2.59757021220577,8.83885756421003,7.26095572075425,14.7255562201987,0.454357159999104,0.302286240427142,4.05810284182349,0,0,0,0,0.448026887097336,0.842666520790511,0.681721290312231,0,0.70667914902068,1.69012103732017,0,0,0,0.216491041011214,0.760079596425296,0.505524445014783,1.48439043634778,2.84831672011889,1.48442139064825,0.867426633830679,1.21786191324856,1.84492397804847,1.3565037649736,1.64624189989987,0.628332956648377,0.988779870937496,1.3013942122792,0,1.29413479957927,0.883366073841574,0,0,5.5628351432194,3.56059401582874,0.766371165625774,1.67741174308288,1.19980546198682,0.381210681219194,4.79330046095433,5.49000723382352,3.8952849154988,10.081810571152,8.18289463457058,4.77912502486988,3.73154905055843,1.73126918545538,0.870848794270651,2.52722758433675,1.89397670297827,3.6433724029557,2.5289231487682,5.22180176435513,2.86339153887859,4.76255494059295,6.02134485338794,5.99691037182265,6.72628763921441,2.58681591519411,2.45837904218165,4.39877810409872,1.7535658594206,1.94633074457919,2.089512999133,1.64625709126355,3.58261680273288,2.1066395619397,1.02939162845886,0.568326998791185,2.278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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=98999 | |||
|HGNC= | |||
|MCL_coexpression_id=376 | |||
|TSSclassifier=NA | |||
|UniProt=Q8R151,A2A5R4 | |||
|association_with_transcript=0bp_to_ENSMUST00000048988,NM_001033196,uc008nzc.1,uc008nze.1_5end | |||
|cluster_id=chr2:166888481..166888548,- | |||
|description=CAGE_peak_3_at_Znfx1_5end | |||
|id=chr2:166888481..166888548,- | |||
|ontology_enrichment_celltype=CL:0000117!2.01e-12!23;CL:0000337!2.01e-12!23;CL:0000540!1.87e-08!33;CL:0000047!1.87e-08!33;CL:0000031!1.87e-08!33;CL:0000404!1.87e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.38e-13,23;CL:0000337,8.38e-13,23;CL:0000540,1.58e-08,33;CL:0000047,1.58e-08,33;CL:0000031,1.58e-08,33;CL:0000404,1.58e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!4.03e-21!63;UBERON:0001049!2.89e-20!52;UBERON:0005068!2.89e-20!52;UBERON:0006241!2.89e-20!52;UBERON:0007135!2.89e-20!52;UBERON:0003056!5.59e-20!49;UBERON:0002346!3.85e-19!71;UBERON:0003075!3.85e-19!71;UBERON:0007284!3.85e-19!71;UBERON:0001017!7.64e-19!73;UBERON:0005743!7.64e-19!73;UBERON:0000955!8.95e-19!50;UBERON:0006238!8.95e-19!50;UBERON:0002616!1.98e-18!49;UBERON:0000153!8.85e-18!94;UBERON:0000073!3.02e-17!75;UBERON:0001016!3.02e-17!75;UBERON:0003080!1.15e-16!40;UBERON:0007811!1.42e-16!86;UBERON:0002020!3.11e-16!34;UBERON:0002780!3.53e-16!39;UBERON:0001890!3.53e-16!39;UBERON:0006240!3.53e-16!39;UBERON:0004121!4.54e-15!102;UBERON:0000924!4.54e-15!102;UBERON:0006601!4.54e-15!102;UBERON:0002791!2.24e-13!29;UBERON:0003528!2.24e-13!29;UBERON:0001893!2.24e-13!29;UBERON:0000956!2.86e-10!21;UBERON:0001869!2.86e-10!21;UBERON:0000203!2.86e-10!21;UBERON:0002619!2.60e-08!17;UBERON:0002021!2.70e-07!10;UBERON:0000411!2.70e-07!10;UBERON:0001950!2.70e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.65e-22,64;UBERON:0003075,2.65e-22,64;UBERON:0007284,2.65e-22,64;UBERON:0000073,7.42e-22,54;UBERON:0001049,1.18e-20,52;UBERON:0005068,1.18e-20,52;UBERON:0006241,1.18e-20,52;UBERON:0007135,1.18e-20,52;UBERON:0003056,1.27e-20,49;UBERON:0001017,7.46e-19,73;UBERON:0010371,1.75e-18,73;UBERON:0010314,6.65e-18,92;UBERON:0000955,1.64e-17,47;UBERON:0006238,1.64e-17,47;UBERON:0001016,2.33e-17,75;UBERON:0003080,3.42e-17,40;UBERON:0002616,3.66e-17,46;UBERON:0002020,9.57e-17,34;UBERON:0002780,1.09e-16,39;UBERON:0001890,1.09e-16,39;UBERON:0006240,1.09e-16,39;UBERON:0004121,2.68e-16,95;UBERON:0000924,2.68e-16,95;UBERON:0006601,2.68e-16,95;UBERON:0003528,8.66e-14,29;UBERON:0002791,8.66e-14,29;UBERON:0001893,8.66e-14,29;UBERON:0000956,1.42e-10,21;UBERON:0001869,1.42e-10,21;UBERON:0000203,1.42e-10,21;UBERON:0002619,1.51e-08,17;UBERON:0002021,1.70e-07,10;UBERON:0000411,1.70e-07,10;UBERON:0001950,1.70e-07,10 | |||
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| |||
|short_description=p3@Znfx1 | |||
}} |
Latest revision as of 04:48, 26 September 2015
Short description: | p3@Znfx1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Znfx1_5end |
Coexpression cluster: | MCL_coexpression_mm9:376 |
Association with transcript: | 0bp_to_ENSMUST00000048988, NM_001033196, uc008nzc.1, uc008nze.1_5end |
EntrezGene: | Znfx1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.38e-13 | 23 |
neuroblast (sensu Vertebrata) | 8.38e-13 | 23 |
neuron | 1.58e-08 | 33 |
neuronal stem cell | 1.58e-08 | 33 |
neuroblast | 1.58e-08 | 33 |
electrically signaling cell | 1.58e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 2.65e-22 | 64 |
neural plate | 2.65e-22 | 64 |
presumptive neural plate | 2.65e-22 | 64 |
regional part of nervous system | 7.42e-22 | 54 |
neural tube | 1.18e-20 | 52 |
neural rod | 1.18e-20 | 52 |
future spinal cord | 1.18e-20 | 52 |
neural keel | 1.18e-20 | 52 |
pre-chordal neural plate | 1.27e-20 | 49 |
central nervous system | 7.46e-19 | 73 |
ecto-epithelium | 1.75e-18 | 73 |
structure with developmental contribution from neural crest | 6.65e-18 | 92 |
brain | 1.64e-17 | 47 |
future brain | 1.64e-17 | 47 |
nervous system | 2.33e-17 | 75 |
anterior neural tube | 3.42e-17 | 40 |
regional part of brain | 3.66e-17 | 46 |
gray matter | 9.57e-17 | 34 |
regional part of forebrain | 1.09e-16 | 39 |
forebrain | 1.09e-16 | 39 |
future forebrain | 1.09e-16 | 39 |
ectoderm-derived structure | 2.68e-16 | 95 |
ectoderm | 2.68e-16 | 95 |
presumptive ectoderm | 2.68e-16 | 95 |
brain grey matter | 8.66e-14 | 29 |
regional part of telencephalon | 8.66e-14 | 29 |
telencephalon | 8.66e-14 | 29 |
cerebral cortex | 1.42e-10 | 21 |
cerebral hemisphere | 1.42e-10 | 21 |
pallium | 1.42e-10 | 21 |
regional part of cerebral cortex | 1.51e-08 | 17 |
occipital lobe | 1.70e-07 | 10 |
visual cortex | 1.70e-07 | 10 |
neocortex | 1.70e-07 | 10 |