FFCP PHASE1:Mm9::chr4:123395424..123395438,-: Difference between revisions
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{{FFCP|EntrezGene=100504968,595136|HGNC=|MCL_coexpression_id=2858|UniProt=Q99LY9,B1ARW4|association_with_transcript=0bp_to_ENSMUST00000106206,ENSMUST00000137312,NM_001030274,uc008upu.1_5end|description=CAGE_peak_1_at_LOC100504968_5end,CAGE_peak_1_at_Ndufs5_5end|id=chr4:123395424..123395438,-|ontology_enrichment_celltype=CL:0002319!1.52e-14!43;CL:0000221!5.16e-14!44;CL:0000133!5.16e-14!44;CL:0000055!1.22e-13!50;CL:0000117!7.68e-11!23;CL:0000337!7.68e-11!23;CL:0000540!4.59e-10!33;CL:0000047!4.59e-10!33;CL:0000031!4.59e-10!33;CL:0000404!4.59e-10!33;CL:0000393!7.27e-09!39;CL:0000211!7.27e-09!39;CL:0002321!5.57e-08!70;CL:0000220!5.57e-08!70|ontology_enrichment_celltype_v019_2=CL:0002319,1.52e-14,43;CL:0000221,5.16e-14,44;CL:0000133,5.16e-14,44;CL:0000117,7.68e-11,23;CL:0000337,7.68e-11,23;CL:0000540,4.59e-10,33;CL:0000047,4.59e-10,33;CL:0000031,4.59e-10,33;CL:0000404,4.59e-10,33;CL:0000393,7.27e-09,39;CL:0000211,7.27e-09,39;CL:0002321,5.57e-08,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!5.22e-20!75;UBERON:0001016!5.22e-20!75;UBERON:0001017!7.74e-20!73;UBERON:0005743!7.74e-20!73;UBERON:0002020!3.13e-15!34;UBERON:0001049!5.67e-15!52;UBERON:0005068!5.67e-15!52;UBERON:0006241!5.67e-15!52;UBERON:0007135!5.67e-15!52;UBERON:0002616!1.48e-13!49;UBERON:0000955!2.38e-13!50;UBERON:0006238!2.38e-13!50;UBERON:0004121!2.48e-13!102;UBERON:0000924!2.48e-13!102;UBERON:0006601!2.48e-13!102;UBERON:0002791!8.85e-13!29;UBERON:0003528!8.85e-13!29;UBERON:0001893!8.85e-13!29;UBERON:0002346!1.50e-12!71;UBERON:0003075!1.50e-12!71;UBERON:0007284!1.50e-12!71;UBERON:0000033!1.01e-10!63;UBERON:0003080!1.28e-09!40;UBERON:0002780!3.36e-09!39;UBERON:0001890!3.36e-09!39;UBERON:0006240!3.36e-09!39;UBERON:0000956!7.66e-09!21;UBERON:0001869!7.66e-09!21;UBERON:0000203!7.66e-09!21;UBERON:0000025!9.73e-09!114;UBERON:0002619!3.75e-08!17;UBERON:0004111!5.78e-08!122;UBERON:0003056!1.87e-07!49;UBERON:0007811!8.16e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.22e-20,75;UBERON:0001017,7.74e-20,73;UBERON:0010314,5.91e-18,92;UBERON:0000073,5.51e-16,54;UBERON:0002020,3.13e-15,34;UBERON:0001049,5.67e-15,52;UBERON:0005068,5.67e-15,52;UBERON:0006241,5.67e-15,52;UBERON:0007135,5.67e-15,52;UBERON:0004121,2.57e-13,95;UBERON:0000924,2.57e-13,95;UBERON:0006601,2.57e-13,95;UBERON:0002346,7.98e-13,64;UBERON:0003075,7.98e-13,64;UBERON:0007284,7.98e-13,64;UBERON:0003528,8.85e-13,29;UBERON:0002791,8.85e-13,29;UBERON:0001893,8.85e-13,29;UBERON:0002616,3.37e-12,46;UBERON:0000955,5.30e-12,47;UBERON:0006238,5.30e-12,47;UBERON:0003080,1.28e-09,40;UBERON:0002780,3.36e-09,39;UBERON:0001890,3.36e-09,39;UBERON:0006240,3.36e-09,39;UBERON:0010371,3.51e-09,73;UBERON:0000956,7.66e-09,21;UBERON:0001869,7.66e-09,21;UBERON:0000203,7.66e-09,21;UBERON:0000025,9.73e-09,114;UBERON:0002619,3.75e-08,17;UBERON:0004111,5.78e-08,122;UBERON:0003056,1.87e-07,49|phase1_expression=9.60893082628764,7.67745896806594,8.64498554840118,5.44435580352294,4.50806156951712,5.70789524500425,8.87728034262997,8.00564605337773,5.20918271961167,4.21316147379588,10.6155140299813,8.85470964848234,7.19043065711064,8.04267702254776,7.32841475994458,5.06188168474565,6.99561878128147,7.41336088591859,6.7186072466812,5.51706547337439,14.627445905984,8.34043990087437,13.0599894569468,11.9994317095055,12.6175104586944,10.3361753540704,11.1998119001359,9.48073423817912,11.9714754257516,11.3413558391969,13.7472916606289,5.08024538767705,7.38077745101484,0,8.08784535303569,8.81043620400009,7.55426618170766,11.3003540298965,17.9707129240474,14.1351410872926,17.6469446409304,12.9778642142105,16.0218416500281,7.05022180663233,6.89363132292699,8.44315059943735,26.6013057078333,29.6514212677407,25.2639110144643,29.3589147602168,18.8981669194239,31.6255641602937,8.89247812106003,10.1550699881588,5.04140698713696,14.663787854049,12.8940047972441,20.6268836910977,19.624696703381,17.4567023159771,31.0577387718028,15.9256930072492,22.2323699027785,21.1476433561129,16.8107281636386,29.1296847127901,24.2676089519908,31.1216827310459,13.2722703754851,13.3655878948374,18.2982716375702,37.7059299413021,34.4554923884517,18.4961106814581,19.2649396746655,20.2228133054205,22.0231761998777,21.4514727983115,23.1945865216928,21.6293511877518,20.5847198105422,25.5247551572812,37.4105218661851,27.0126052815206,24.4477196442896,12.9636577608414,23.3489556510529,23.1135312823373,12.7220004799749,11.8647349367653,8.69593466105033,23.2314446784974,16.9992833426938,9.17495425784289,23.3919510281161,22.8493712419641,14.8871085339657,7.83979483859066,16.1067322853779,17.3136391510067,8.59144860637751,12.8326477414318,5.09610479413291,0,10.8245520505607,14.1881524666055,12.6381111253696,7.30776830201984,5.17875767294343,9.05497048295431,9.36820764537134,9.74289530598852,13.3756988408514,10.7013074792362,10.9357497636205,15.5826573248798,3.21353458054686,18.5087176857487,6.19227386364912,15.5296175949513,14.3546986999256,12.6067565815158,29.8226817948995,18.737971008739,19.05965032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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=100504968,595136 | |||
|HGNC= | |||
|MCL_coexpression_id=2858 | |||
|TSSclassifier=NA | |||
|UniProt=Q99LY9,B1ARW4 | |||
|association_with_transcript=0bp_to_ENSMUST00000106206,ENSMUST00000137312,NM_001030274,uc008upu.1_5end | |||
|cluster_id=chr4:123395424..123395438,- | |||
|description=CAGE_peak_1_at_LOC100504968_5end,CAGE_peak_1_at_Ndufs5_5end | |||
|id=chr4:123395424..123395438,- | |||
|ontology_enrichment_celltype=CL:0002319!1.52e-14!43;CL:0000221!5.16e-14!44;CL:0000133!5.16e-14!44;CL:0000055!1.22e-13!50;CL:0000117!7.68e-11!23;CL:0000337!7.68e-11!23;CL:0000540!4.59e-10!33;CL:0000047!4.59e-10!33;CL:0000031!4.59e-10!33;CL:0000404!4.59e-10!33;CL:0000393!7.27e-09!39;CL:0000211!7.27e-09!39;CL:0002321!5.57e-08!70;CL:0000220!5.57e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.52e-14,43;CL:0000221,5.16e-14,44;CL:0000133,5.16e-14,44;CL:0000117,7.68e-11,23;CL:0000337,7.68e-11,23;CL:0000540,4.59e-10,33;CL:0000047,4.59e-10,33;CL:0000031,4.59e-10,33;CL:0000404,4.59e-10,33;CL:0000393,7.27e-09,39;CL:0000211,7.27e-09,39;CL:0002321,5.57e-08,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!5.22e-20!75;UBERON:0001016!5.22e-20!75;UBERON:0001017!7.74e-20!73;UBERON:0005743!7.74e-20!73;UBERON:0002020!3.13e-15!34;UBERON:0001049!5.67e-15!52;UBERON:0005068!5.67e-15!52;UBERON:0006241!5.67e-15!52;UBERON:0007135!5.67e-15!52;UBERON:0002616!1.48e-13!49;UBERON:0000955!2.38e-13!50;UBERON:0006238!2.38e-13!50;UBERON:0004121!2.48e-13!102;UBERON:0000924!2.48e-13!102;UBERON:0006601!2.48e-13!102;UBERON:0002791!8.85e-13!29;UBERON:0003528!8.85e-13!29;UBERON:0001893!8.85e-13!29;UBERON:0002346!1.50e-12!71;UBERON:0003075!1.50e-12!71;UBERON:0007284!1.50e-12!71;UBERON:0000033!1.01e-10!63;UBERON:0003080!1.28e-09!40;UBERON:0002780!3.36e-09!39;UBERON:0001890!3.36e-09!39;UBERON:0006240!3.36e-09!39;UBERON:0000956!7.66e-09!21;UBERON:0001869!7.66e-09!21;UBERON:0000203!7.66e-09!21;UBERON:0000025!9.73e-09!114;UBERON:0002619!3.75e-08!17;UBERON:0004111!5.78e-08!122;UBERON:0003056!1.87e-07!49;UBERON:0007811!8.16e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.22e-20,75;UBERON:0001017,7.74e-20,73;UBERON:0010314,5.91e-18,92;UBERON:0000073,5.51e-16,54;UBERON:0002020,3.13e-15,34;UBERON:0001049,5.67e-15,52;UBERON:0005068,5.67e-15,52;UBERON:0006241,5.67e-15,52;UBERON:0007135,5.67e-15,52;UBERON:0004121,2.57e-13,95;UBERON:0000924,2.57e-13,95;UBERON:0006601,2.57e-13,95;UBERON:0002346,7.98e-13,64;UBERON:0003075,7.98e-13,64;UBERON:0007284,7.98e-13,64;UBERON:0003528,8.85e-13,29;UBERON:0002791,8.85e-13,29;UBERON:0001893,8.85e-13,29;UBERON:0002616,3.37e-12,46;UBERON:0000955,5.30e-12,47;UBERON:0006238,5.30e-12,47;UBERON:0003080,1.28e-09,40;UBERON:0002780,3.36e-09,39;UBERON:0001890,3.36e-09,39;UBERON:0006240,3.36e-09,39;UBERON:0010371,3.51e-09,73;UBERON:0000956,7.66e-09,21;UBERON:0001869,7.66e-09,21;UBERON:0000203,7.66e-09,21;UBERON:0000025,9.73e-09,114;UBERON:0002619,3.75e-08,17;UBERON:0004111,5.78e-08,122;UBERON:0003056,1.87e-07,49 | |||
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| |||
|short_description=p1@LOC100504968,p1@Ndufs5 | |||
}} |
Latest revision as of 07:41, 26 September 2015
Short description: | p1@LOC100504968, p1@Ndufs5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LOC100504968_5end, CAGE_peak_1_at_Ndufs5_5end |
Coexpression cluster: | MCL_coexpression_mm9:2858 |
Association with transcript: | 0bp_to_ENSMUST00000106206, ENSMUST00000137312, NM_001030274, uc008upu.1_5end |
EntrezGene: | 100504968,595136 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.52e-14 | 43 |
ectodermal cell | 5.16e-14 | 44 |
neurectodermal cell | 5.16e-14 | 44 |
CNS neuron (sensu Vertebrata) | 7.68e-11 | 23 |
neuroblast (sensu Vertebrata) | 7.68e-11 | 23 |
neuron | 4.59e-10 | 33 |
neuronal stem cell | 4.59e-10 | 33 |
neuroblast | 4.59e-10 | 33 |
electrically signaling cell | 4.59e-10 | 33 |
electrically responsive cell | 7.27e-09 | 39 |
electrically active cell | 7.27e-09 | 39 |
embryonic cell | 5.57e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 5.22e-20 | 75 |
central nervous system | 7.74e-20 | 73 |
structure with developmental contribution from neural crest | 5.91e-18 | 92 |
regional part of nervous system | 5.51e-16 | 54 |
gray matter | 3.13e-15 | 34 |
neural tube | 5.67e-15 | 52 |
neural rod | 5.67e-15 | 52 |
future spinal cord | 5.67e-15 | 52 |
neural keel | 5.67e-15 | 52 |
ectoderm-derived structure | 2.57e-13 | 95 |
ectoderm | 2.57e-13 | 95 |
presumptive ectoderm | 2.57e-13 | 95 |
neurectoderm | 7.98e-13 | 64 |
neural plate | 7.98e-13 | 64 |
presumptive neural plate | 7.98e-13 | 64 |
brain grey matter | 8.85e-13 | 29 |
regional part of telencephalon | 8.85e-13 | 29 |
telencephalon | 8.85e-13 | 29 |
regional part of brain | 3.37e-12 | 46 |
brain | 5.30e-12 | 47 |
future brain | 5.30e-12 | 47 |
anterior neural tube | 1.28e-09 | 40 |
regional part of forebrain | 3.36e-09 | 39 |
forebrain | 3.36e-09 | 39 |
future forebrain | 3.36e-09 | 39 |
ecto-epithelium | 3.51e-09 | 73 |
cerebral cortex | 7.66e-09 | 21 |
cerebral hemisphere | 7.66e-09 | 21 |
pallium | 7.66e-09 | 21 |
tube | 9.73e-09 | 114 |
regional part of cerebral cortex | 3.75e-08 | 17 |
anatomical conduit | 5.78e-08 | 122 |
pre-chordal neural plate | 1.87e-07 | 49 |