FFCP PHASE1:Mm9::chr2:26483985..26484070,+: Difference between revisions
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{{FFCP|EntrezGene=56279|HGNC=|MCL_coexpression_id=13|UniProt=Q99ML4|association_with_transcript=0bp_to_ENSMUST00000153849,uc008ivx.2_5end|description=CAGE_peak_1_at_Fam69b_5end|id=chr2:26483985..26484070,+|ontology_enrichment_celltype=CL:0000117!2.80e-14!23;CL:0000337!2.80e-14!23;CL:0000393!4.82e-12!39;CL:0000211!4.82e-12!39;CL:0000540!7.47e-12!33;CL:0000047!7.47e-12!33;CL:0000031!7.47e-12!33;CL:0000404!7.47e-12!33;CL:0000221!4.73e-10!44;CL:0000133!4.73e-10!44;CL:0002319!9.84e-10!43;CL:0000055!1.48e-09!50|ontology_enrichment_celltype_v019_2=CL:0000117,2.36e-14,23;CL:0000337,2.36e-14,23;CL:0000393,4.19e-12,39;CL:0000211,4.19e-12,39;CL:0000540,6.51e-12,33;CL:0000047,6.51e-12,33;CL:0000031,6.51e-12,33;CL:0000404,6.51e-12,33;CL:0000221,3.67e-10,44;CL:0000133,3.67e-10,44;CL:0002319,7.69e-10,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.17e-27!73;UBERON:0005743!1.17e-27!73;UBERON:0000073!7.34e-26!75;UBERON:0001016!7.34e-26!75;UBERON:0000033!1.01e-25!63;UBERON:0001049!1.94e-25!52;UBERON:0005068!1.94e-25!52;UBERON:0006241!1.94e-25!52;UBERON:0007135!1.94e-25!52;UBERON:0002346!2.61e-24!71;UBERON:0003075!2.61e-24!71;UBERON:0007284!2.61e-24!71;UBERON:0000955!4.52e-24!50;UBERON:0006238!4.52e-24!50;UBERON:0002616!1.45e-23!49;UBERON:0003056!1.86e-21!49;UBERON:0004121!1.77e-20!102;UBERON:0000924!1.77e-20!102;UBERON:0006601!1.77e-20!102;UBERON:0003080!2.01e-19!40;UBERON:0002780!7.42e-19!39;UBERON:0001890!7.42e-19!39;UBERON:0006240!7.42e-19!39;UBERON:0002020!8.89e-19!34;UBERON:0002791!1.19e-15!29;UBERON:0003528!1.19e-15!29;UBERON:0001893!1.19e-15!29;UBERON:0000153!4.20e-12!94;UBERON:0007811!1.72e-11!86;UBERON:0000956!7.93e-11!21;UBERON:0001869!7.93e-11!21;UBERON:0000203!7.93e-11!21;UBERON:0002619!4.95e-09!17;UBERON:0002021!9.56e-08!10;UBERON:0000411!9.56e-08!10;UBERON:0001950!9.56e-08!10;UBERON:0000025!7.19e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.11e-28,73;UBERON:0002346,3.26e-27,64;UBERON:0003075,3.26e-27,64;UBERON:0007284,3.26e-27,64;UBERON:0000073,4.35e-27,54;UBERON:0001016,4.40e-26,75;UBERON:0001049,1.41e-25,52;UBERON:0005068,1.41e-25,52;UBERON:0006241,1.41e-25,52;UBERON:0007135,1.41e-25,52;UBERON:0010314,2.86e-22,92;UBERON:0000955,3.49e-22,47;UBERON:0006238,3.49e-22,47;UBERON:0010371,4.02e-22,73;UBERON:0004121,4.34e-22,95;UBERON:0000924,4.34e-22,95;UBERON:0006601,4.34e-22,95;UBERON:0002616,1.10e-21,46;UBERON:0003056,1.43e-21,49;UBERON:0003080,1.59e-19,40;UBERON:0002780,5.89e-19,39;UBERON:0001890,5.89e-19,39;UBERON:0006240,5.89e-19,39;UBERON:0002020,7.07e-19,34;UBERON:0003528,9.89e-16,29;UBERON:0002791,9.89e-16,29;UBERON:0001893,9.89e-16,29;UBERON:0000956,7.01e-11,21;UBERON:0001869,7.01e-11,21;UBERON:0000203,7.01e-11,21;UBERON:0002619,4.48e-09,17;UBERON:0002021,8.80e-08,10;UBERON:0000411,8.80e-08,10;UBERON:0001950,8.80e-08,10;UBERON:0000025,4.71e-07,114|phase1_expression=18.7374151112609,0.697950815278722,0.909998478779072,2.72217790176147,4.50806156951712,1.00727563147134,0.934450562382103,0.516493293766305,0.703943610758334,0,0.513653904676515,0.478632953972018,0.513602189793617,0.437102012094987,0,0.607425802169478,0,0.157731082679119,0.274228867211478,0,11.2257142999412,1.39007331681239,2.87319768052829,1.11994695955385,0.91763712426868,0,0.86152399231815,0.861884930743556,3.42042155021473,1.76421090831952,2.66076612786366,1.90509202037889,1.84519436275371,0,1.1554064790051,2.99222361645286,1.63335485009895,1.25559489221072,1.5626706890476,1.0470474879476,1.17646297606203,1.36609096991689,0.485510353031154,18.6327290603854,16.8285705824394,11.9305388905093,22.6893489860931,2.8343270329458,5.05278220289285,3.88859798148567,4.05960622713551,0,0,0.725362142011344,0,3.60163210450326,3.15186783932632,4.12537673821954,41.2725580153579,48.138179113755,38.6637156138769,10.165335962074,4.4464739805557,3.5995988691256,2.96659908770092,2.8419204597844,19.1744070731779,19.2109152660777,19.3899575016853,25.3811164063578,19.7705463670299,45.132855535801,45.0571823541292,19.4760370751777,18.1147940224467,22.0612508786405,41.8440347797677,38.8169507778971,38.4016333140609,44.9732241159961,43.2736554239398,36.4639359389732,54.7198678042707,55.1507357831046,38.0467636964257,38.3017161115768,33.7420883493874,36.3478919359336,0.530083353332288,1.66257432234928,2.89864488701678,0.860423876981386,0,0,0,0,5.89866564553358,6.30592193538814,10.9110121933205,7.42013106471715,12.1125341007945,1.28326477414318,0,0,2.59789249213457,2.28023878927589,2.02209778005913,1.25602267690966,0,2.3750742250372,7.80683970447611,4.56698217468212,2.53677046981664,1.95939432718409,2.58695155698551,3.51866455723091,0.494389935468748,6.07317299063629,0,2.10296904931632,1.76673214768315,1.93950101254089,5.59175283654366,36.3048188294318,32.673686262899,1.02182822083437,8.98613433794402,2.99951365496704,5.33694953706872,32.5045687508465,28.8225379775735,26.7643770000401,30.0716073932638,34.2658712822643,36.7784838870421,29.5279098783319,6.92507674182151,2.23932547098167,7.07623723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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=56279 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=Q99ML4 | |||
|association_with_transcript=0bp_to_ENSMUST00000153849,uc008ivx.2_5end | |||
|cluster_id=chr2:26483985..26484070,+ | |||
|description=CAGE_peak_1_at_Fam69b_5end | |||
|id=chr2:26483985..26484070,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.80e-14!23;CL:0000337!2.80e-14!23;CL:0000393!4.82e-12!39;CL:0000211!4.82e-12!39;CL:0000540!7.47e-12!33;CL:0000047!7.47e-12!33;CL:0000031!7.47e-12!33;CL:0000404!7.47e-12!33;CL:0000221!4.73e-10!44;CL:0000133!4.73e-10!44;CL:0002319!9.84e-10!43;CL:0000055!1.48e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.36e-14,23;CL:0000337,2.36e-14,23;CL:0000393,4.19e-12,39;CL:0000211,4.19e-12,39;CL:0000540,6.51e-12,33;CL:0000047,6.51e-12,33;CL:0000031,6.51e-12,33;CL:0000404,6.51e-12,33;CL:0000221,3.67e-10,44;CL:0000133,3.67e-10,44;CL:0002319,7.69e-10,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.17e-27!73;UBERON:0005743!1.17e-27!73;UBERON:0000073!7.34e-26!75;UBERON:0001016!7.34e-26!75;UBERON:0000033!1.01e-25!63;UBERON:0001049!1.94e-25!52;UBERON:0005068!1.94e-25!52;UBERON:0006241!1.94e-25!52;UBERON:0007135!1.94e-25!52;UBERON:0002346!2.61e-24!71;UBERON:0003075!2.61e-24!71;UBERON:0007284!2.61e-24!71;UBERON:0000955!4.52e-24!50;UBERON:0006238!4.52e-24!50;UBERON:0002616!1.45e-23!49;UBERON:0003056!1.86e-21!49;UBERON:0004121!1.77e-20!102;UBERON:0000924!1.77e-20!102;UBERON:0006601!1.77e-20!102;UBERON:0003080!2.01e-19!40;UBERON:0002780!7.42e-19!39;UBERON:0001890!7.42e-19!39;UBERON:0006240!7.42e-19!39;UBERON:0002020!8.89e-19!34;UBERON:0002791!1.19e-15!29;UBERON:0003528!1.19e-15!29;UBERON:0001893!1.19e-15!29;UBERON:0000153!4.20e-12!94;UBERON:0007811!1.72e-11!86;UBERON:0000956!7.93e-11!21;UBERON:0001869!7.93e-11!21;UBERON:0000203!7.93e-11!21;UBERON:0002619!4.95e-09!17;UBERON:0002021!9.56e-08!10;UBERON:0000411!9.56e-08!10;UBERON:0001950!9.56e-08!10;UBERON:0000025!7.19e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.11e-28,73;UBERON:0002346,3.26e-27,64;UBERON:0003075,3.26e-27,64;UBERON:0007284,3.26e-27,64;UBERON:0000073,4.35e-27,54;UBERON:0001016,4.40e-26,75;UBERON:0001049,1.41e-25,52;UBERON:0005068,1.41e-25,52;UBERON:0006241,1.41e-25,52;UBERON:0007135,1.41e-25,52;UBERON:0010314,2.86e-22,92;UBERON:0000955,3.49e-22,47;UBERON:0006238,3.49e-22,47;UBERON:0010371,4.02e-22,73;UBERON:0004121,4.34e-22,95;UBERON:0000924,4.34e-22,95;UBERON:0006601,4.34e-22,95;UBERON:0002616,1.10e-21,46;UBERON:0003056,1.43e-21,49;UBERON:0003080,1.59e-19,40;UBERON:0002780,5.89e-19,39;UBERON:0001890,5.89e-19,39;UBERON:0006240,5.89e-19,39;UBERON:0002020,7.07e-19,34;UBERON:0003528,9.89e-16,29;UBERON:0002791,9.89e-16,29;UBERON:0001893,9.89e-16,29;UBERON:0000956,7.01e-11,21;UBERON:0001869,7.01e-11,21;UBERON:0000203,7.01e-11,21;UBERON:0002619,4.48e-09,17;UBERON:0002021,8.80e-08,10;UBERON:0000411,8.80e-08,10;UBERON:0001950,8.80e-08,10;UBERON:0000025,4.71e-07,114 | |||
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| |||
|short_description=p1@Fam69b | |||
}} |
Latest revision as of 11:14, 26 September 2015
Short description: | p1@Fam69b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Fam69b_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000153849, uc008ivx.2_5end |
EntrezGene: | Fam69b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.36e-14 | 23 |
neuroblast (sensu Vertebrata) | 2.36e-14 | 23 |
electrically responsive cell | 4.19e-12 | 39 |
electrically active cell | 4.19e-12 | 39 |
neuron | 6.51e-12 | 33 |
neuronal stem cell | 6.51e-12 | 33 |
neuroblast | 6.51e-12 | 33 |
electrically signaling cell | 6.51e-12 | 33 |
ectodermal cell | 3.67e-10 | 44 |
neurectodermal cell | 3.67e-10 | 44 |
neural cell | 7.69e-10 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 6.11e-28 | 73 |
neurectoderm | 3.26e-27 | 64 |
neural plate | 3.26e-27 | 64 |
presumptive neural plate | 3.26e-27 | 64 |
regional part of nervous system | 4.35e-27 | 54 |
nervous system | 4.40e-26 | 75 |
neural tube | 1.41e-25 | 52 |
neural rod | 1.41e-25 | 52 |
future spinal cord | 1.41e-25 | 52 |
neural keel | 1.41e-25 | 52 |
structure with developmental contribution from neural crest | 2.86e-22 | 92 |
brain | 3.49e-22 | 47 |
future brain | 3.49e-22 | 47 |
ecto-epithelium | 4.02e-22 | 73 |
ectoderm-derived structure | 4.34e-22 | 95 |
ectoderm | 4.34e-22 | 95 |
presumptive ectoderm | 4.34e-22 | 95 |
regional part of brain | 1.10e-21 | 46 |
pre-chordal neural plate | 1.43e-21 | 49 |
anterior neural tube | 1.59e-19 | 40 |
regional part of forebrain | 5.89e-19 | 39 |
forebrain | 5.89e-19 | 39 |
future forebrain | 5.89e-19 | 39 |
gray matter | 7.07e-19 | 34 |
brain grey matter | 9.89e-16 | 29 |
regional part of telencephalon | 9.89e-16 | 29 |
telencephalon | 9.89e-16 | 29 |
cerebral cortex | 7.01e-11 | 21 |
cerebral hemisphere | 7.01e-11 | 21 |
pallium | 7.01e-11 | 21 |
regional part of cerebral cortex | 4.48e-09 | 17 |
occipital lobe | 8.80e-08 | 10 |
visual cortex | 8.80e-08 | 10 |
neocortex | 8.80e-08 | 10 |
tube | 4.71e-07 | 114 |