FFCP PHASE1:Mm9::chr1:140743964..140743976,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=16876 | |EntrezGene=16876 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1732 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-43bp_to_ENSMUST00000138932,uc007cvt.1_5end | |association_with_transcript=-43bp_to_ENSMUST00000138932,uc007cvt.1_5end | ||
|cluster_id=chr1:140743964..140743976,- | |||
|description=CAGE_peak_3_at_Lhx9_5end | |description=CAGE_peak_3_at_Lhx9_5end | ||
|id=chr1:140743964..140743976,- | |id=chr1:140743964..140743976,- | ||
|ontology_enrichment_celltype=CL:0000117!8.04e-10!23;CL:0000337!8.04e-10!23 | |ontology_enrichment_celltype=CL:0000117!8.04e-10!23;CL:0000337!8.04e-10!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.81e-19,23;CL:0000337,1.81e-19,23;CL:0002613,7.90e-16,3;CL:0000120,3.71e-15,3;CL:0002610,2.30e-14,3;CL:0000540,3.95e-13,33;CL:0000047,3.95e-13,33;CL:0000031,3.95e-13,33;CL:0000404,3.95e-13,33;CL:0000393,7.00e-11,39;CL:0000211,7.00e-11,39;CL:0002319,9.92e-10,43;CL:0000221,1.79e-09,44;CL:0000133,1.79e-09,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004684,2.30e-14,3;UBERON:0002275,2.30e-14,3;UBERON:0002420,3.96e-10,8;UBERON:0007245,3.96e-10,8;UBERON:0010009,3.96e-10,8;UBERON:0010011,3.96e-10,8;UBERON:0000454,3.96e-10,8;UBERON:0000369,1.07e-09,5;UBERON:0002435,1.07e-09,5;UBERON:0000204,1.07e-09,5;UBERON:0010082,1.07e-09,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573066879877513,0,4.85559506063035,4.7609188134483,3.1691570175309,0,0,0,0,0,0,0,0,0,0,0,0.441737081903227,0.122490799214954,0,0,4.40463523997555,1.27687338085188,1.99688493233117,6.59431438650969,6.49562269577109,5.2091337055676,2.51264699101243,0,0.30559649555362,0.294628585473668,0.142371680799103,0.186399445825301,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.29120685500255,0.457500602818626,0,0,0,0.83115217823824,0.486723789203273,0.101839363850316,0,0,0,0,0,0,0,0.0680364991513279,0.2562274405697,0.374806898238915,0,2.15567992932842,3.78212160335639,0.879755620819744,0,0.278047249225598,0,0,2.58744546864041,0,0,0,0.207125772535502,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134206418760372,0.630869845692382,0.720332286654991,0,0,1.06644125267617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166845105716094,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0.234423373184406,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0.141940085208269,0,0.162886959353576,0.164970122972535,0,0.485561272309963,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214337035031592,0.177340233642274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.82554747185289,0.370389054739423,0,0,0,0,0,0,0,0.790839983952838,0,0.216010681643603,0,0,0,0,0,0,0,0,3.58839710505549,2.15096037594227,0.777804753376191,0.129159823477731,0.337912250981556,0.117357238645754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572895513439397,0.343706364687375,0,0,0,0,0,0,0.93408612825759,1.19707462020309,0,0.486213434136588,0,0.551530525350042,0.44449345560323,0.824140228955577,0.64183841918363,0.505394423527595,0,0.377252682772152,0.187283014939765,0.192075457214608,0.287177344778066,0.476293691283074,0.231768651889711,0,0,0,1.02860775715625,0.532427418478012,0.238436189947321,0.145346416632329,0.564656282491984,0.25384382367503,0.182927972872773,0,0.271608227691724,0.561142271657738,0.355905054372522,0.591026894253381,0.818462086339379,0.619747364743864,0,0.249810577937946,0.233931608445408,0.214871054048298,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573066879877513,0,4.85559506063035,4.7609188134483,3.1691570175309,0,0,0,0,0,0,0,0,0,0,0,0.441737081903227,0.122490799214954,0,0,4.40463523997555,1.27687338085188,1.99688493233117,6.59431438650969,6.49562269577109,5.2091337055676,2.51264699101243,0,0.30559649555362,0.294628585473668,0.142371680799103,0.186399445825301,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.29120685500255,0.457500602818626,0,0,0,0.83115217823824,0.486723789203273,0.101839363850316,0,0,0,0,0,0,0,0.0680364991513279,0.2562274405697,0.374806898238915,0,2.15567992932842,3.78212160335639,0.879755620819744,0,0.278047249225598,0,0,2.58744546864041,0,0,0,0.207125772535502,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134206418760372,0.630869845692382,0.720332286654991,0,0,1.06644125267617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166845105716094,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0.234423373184406,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0.141940085208269,0,0.162886959353576,0.164970122972535,0,0.485561272309963,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214337035031592,0.177340233642274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.82554747185289,0.370389054739423,0,0,0,0,0,0,0,0.790839983952838,0,0.216010681643603,0,0,0,0,0,0,0,0,3.58839710505549,2.15096037594227,0.777804753376191,0.129159823477731,0.337912250981556,0.117357238645754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572895513439397,0.343706364687375,0,0,0,0,0,0,0.93408612825759,1.19707462020309,0,0.486213434136588,0,0.551530525350042,0.44449345560323,0.824140228955577,0.64183841918363,0.505394423527595,0,0.377252682772152,0.187283014939765,0.192075457214608,0.287177344778066,0.476293691283074,0.231768651889711,0,0,0,1.02860775715625,0.532427418478012,0.238436189947321,0.145346416632329,0.564656282491984,0.25384382367503,0.182927972872773,0,0.271608227691724,0.561142271657738,0.355905054372522,0.591026894253381,0.818462086339379,0.619747364743864,0,0.249810577937946,0.233931608445408,0.214871054048298,0,0,0 | ||
|short_description=p3@Lhx9 | |short_description=p3@Lhx9 | ||
}} | }} |
Latest revision as of 12:06, 26 September 2015
Short description: | p3@Lhx9 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Lhx9_5end |
Coexpression cluster: | MCL_coexpression_mm9:1732 |
Association with transcript: | -43bp_to_ENSMUST00000138932, uc007cvt.1_5end |
EntrezGene: | Lhx9 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.81e-19 | 23 |
neuroblast (sensu Vertebrata) | 1.81e-19 | 23 |
striatum neuron | 7.90e-16 | 3 |
granule cell | 3.71e-15 | 3 |
raphe nuclei neuron | 2.30e-14 | 3 |
neuron | 3.95e-13 | 33 |
neuronal stem cell | 3.95e-13 | 33 |
neuroblast | 3.95e-13 | 33 |
electrically signaling cell | 3.95e-13 | 33 |
electrically responsive cell | 7.00e-11 | 39 |
electrically active cell | 7.00e-11 | 39 |
neural cell | 9.92e-10 | 43 |
ectodermal cell | 1.79e-09 | 44 |
neurectodermal cell | 1.79e-09 | 44 |
Ontology term | p-value | n |
---|---|---|
raphe nuclei | 2.30e-14 | 3 |
reticular formation | 2.30e-14 | 3 |
basal ganglion | 3.96e-10 | 8 |
nuclear complex of neuraxis | 3.96e-10 | 8 |
aggregate regional part of brain | 3.96e-10 | 8 |
collection of basal ganglia | 3.96e-10 | 8 |
cerebral subcortex | 3.96e-10 | 8 |
corpus striatum | 1.07e-09 | 5 |
striatum | 1.07e-09 | 5 |
ventral part of telencephalon | 1.07e-09 | 5 |
future corpus striatum | 1.07e-09 | 5 |