FFCP PHASE1:Mm9::chr2:55289511..55289593,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=16519|HGNC=|MCL_coexpression_id=1|UniProt=B1AYE4,P63250,Q3ZAT1|association_with_transcript=0bp_to_ENSMUST00000112632,ENSMUST00000112633,NM_008426_5end|description=CAGE_peak_1_at_Kcnj3_5end|id=chr2:55289511..55289593,+|ontology_enrichment_celltype=CL:0000540!9.82e-12!33;CL:0000047!9.82e-12!33;CL:0000031!9.82e-12!33;CL:0000404!9.82e-12!33;CL:0000117!2.04e-10!23;CL:0000337!2.04e-10!23;CL:0000393!5.59e-09!39;CL:0000211!5.59e-09!39|ontology_enrichment_celltype_v019_2=CL:0000540,1.04e-14,33;CL:0000047,1.04e-14,33;CL:0000031,1.04e-14,33;CL:0000404,1.04e-14,33;CL:0000117,9.25e-13,23;CL:0000337,9.25e-13,23;CL:0000393,1.09e-11,39;CL:0000211,1.09e-11,39;CL:0002319,8.55e-09,43;CL:0000221,2.27e-08,44;CL:0000133,2.27e-08,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!8.41e-23!73;UBERON:0005743!8.41e-23!73;UBERON:0000033!1.99e-21!63;UBERON:0000073!2.95e-21!75;UBERON:0001016!2.95e-21!75;UBERON:0002346!3.21e-20!71;UBERON:0003075!3.21e-20!71;UBERON:0007284!3.21e-20!71;UBERON:0001049!3.47e-20!52;UBERON:0005068!3.47e-20!52;UBERON:0006241!3.47e-20!52;UBERON:0007135!3.47e-20!52;UBERON:0000955!6.08e-20!50;UBERON:0006238!6.08e-20!50;UBERON:0002616!3.59e-19!49;UBERON:0003056!1.92e-18!49;UBERON:0004121!6.92e-18!102;UBERON:0000924!6.92e-18!102;UBERON:0006601!6.92e-18!102;UBERON:0003080!6.48e-16!40;UBERON:0002020!1.04e-15!34;UBERON:0002780!2.92e-15!39;UBERON:0001890!2.92e-15!39;UBERON:0006240!2.92e-15!39;UBERON:0002791!1.33e-13!29;UBERON:0003528!1.33e-13!29;UBERON:0001893!1.33e-13!29;UBERON:0000025!1.52e-12!114;UBERON:0004111!5.16e-11!122;UBERON:0007811!1.10e-10!86;UBERON:0000956!3.00e-10!21;UBERON:0001869!3.00e-10!21;UBERON:0000203!3.00e-10!21;UBERON:0000153!4.51e-09!94;UBERON:0002021!2.10e-08!10;UBERON:0000411!2.10e-08!10;UBERON:0001950!2.10e-08!10;UBERON:0002619!2.22e-08!17;UBERON:0007100!6.93e-08!18;UBERON:0000948!6.93e-08!18;UBERON:0005498!6.93e-08!18;UBERON:0004140!6.93e-08!18;UBERON:0009881!6.93e-08!18;UBERON:0004141!6.93e-08!18;UBERON:0003084!6.93e-08!18;UBERON:0007005!6.93e-08!18;UBERON:0004139!6.93e-08!18;UBERON:0004291!6.93e-08!18|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.85e-32,92;UBERON:0001017,5.93e-30,73;UBERON:0002346,3.86e-29,64;UBERON:0003075,3.86e-29,64;UBERON:0007284,3.86e-29,64;UBERON:0001016,1.73e-28,75;UBERON:0000073,8.18e-27,54;UBERON:0004121,1.69e-25,95;UBERON:0000924,1.69e-25,95;UBERON:0006601,1.69e-25,95;UBERON:0001049,3.46e-25,52;UBERON:0005068,3.46e-25,52;UBERON:0006241,3.46e-25,52;UBERON:0007135,3.46e-25,52;UBERON:0003056,3.94e-23,49;UBERON:0010371,9.50e-23,73;UBERON:0000955,1.70e-22,47;UBERON:0006238,1.70e-22,47;UBERON:0002616,1.53e-21,46;UBERON:0003080,6.26e-20,40;UBERON:0002020,2.32e-19,34;UBERON:0002780,4.23e-19,39;UBERON:0001890,4.23e-19,39;UBERON:0006240,4.23e-19,39;UBERON:0003528,1.07e-16,29;UBERON:0002791,1.07e-16,29;UBERON:0001893,1.07e-16,29;UBERON:0000025,2.60e-14,114;UBERON:0000956,1.88e-12,21;UBERON:0001869,1.88e-12,21;UBERON:0000203,1.88e-12,21;UBERON:0004111,6.91e-12,122;UBERON:0002021,3.22e-10,10;UBERON:0000411,3.22e-10,10;UBERON:0001950,3.22e-10,10;UBERON:0002619,4.32e-10,17;UBERON:0007100,2.32e-09,18;UBERON:0000948,2.32e-09,18;UBERON:0005498,2.32e-09,18;UBERON:0004140,2.32e-09,18;UBERON:0009881,2.32e-09,18;UBERON:0004141,2.32e-09,18;UBERON:0003084,2.32e-09,18;UBERON:0007005,2.32e-09,18;UBERON:0004139,2.32e-09,18;UBERON:0004291,2.32e-09,18|phase1_expression=0,0,0,0,0,0.33575854382378,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,5.44277056966847,0,0,0,0,0,0,0.215471232685889,0,0,0,0,0,15.8481681015439,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0.194429899074283,0,0,0,0,0,0,0.286533439938757,3.09403255366465,3.43937983461316,5.28990979272033,5.70448263155561,0,0.889294796111139,0,0,0,0,0,6.11768712620018,4.05017814995072,3.57552434297349,3.42781181284564,3.75476519617743,3.79721477566358,2.1086003624012,1.83843757322004,13.2139057199266,15.0671058940522,10.1380311949121,3.03338461779446,2.74462930807229,4.16730696445408,5.58365998002762,9.56696437053856,12.071061574368,6.18720029494702,4.8406371471695,5.96478226640962,0,0,0,0,0,0,0,0,0.702222100658759,0,0,0,0.281686839553361,0,0,0,0,0,0,0.34255163915718,0,0,0.173485326766136,0,0.230615497256059,0.150722640552623,0.23517741427141,0.125666591329675,0,0.144599356919912,0,0.808834249737046,0.220841518460394,0,0,33.6697916563279,22.4107976290397,0,0,0,0,20.5213175984607,14.640019290196,2.89005009859588,34.7648640384553,34.5215867395946,17.6619837875626,19.9556753573342,0.203678727700633,0.124406970610093,0.252722758433675,1.47309299120532,4.29397461776922,4.82794419310293,3.96136685571768,2.10986744970001,2.58538696775046,1.7935920839879,2.34254311399322,2.84573707812917,0.215567992932842,0,0.703804496655795,0.43839146485515,0,0.348252166522167,0,0.796137067273973,0,0,0,8.28503090142008,7.50483391939508,8.64297895012871,7.10234206755631,6.49321964766433,7.25055430570678,8.13868806626427,6.70683503499048,9.5747580741079,5.9241545968853,7.22336841948019,7.05298643048945,8.18719929581861,8.12335426576887,13.6890547135579,41.8476997642613,8.02655976558419,0,0,0.426576501070468,0.464473343720877,0.128867461322093,0.605050573870028,0.22237804384487,0.760902504450237,0,0.329397909448022,0,0.198956472041151,0.19496408711912,0,0,0.199141273254367,0,0.114248512609729,0,0.203651327845314,0.193952487167626,0.0701358198903186,0,0,0,0,0,0.500535317148282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29327233116623,0.568474235311454,0.977789858652155,1.01847051465113,1.17345124144251,0.670025029767263,0.476087281772027,0.975668239288994,1.10344600874334,0.44292937929755,0.478364305972461,0.491589944147214,0.518054945597687,0.433947175744535,0,0,0,0,16.3761601787548,11.7211686592203,0,0,1.57754109708128,1.17131623288992,1.50796378412959,1.43381278771531,5.56996685205985,5.09537755419898,3.23848561339915,4.38383786866968,3.55759000151871,49.1621614125365,4.25820255624806,0.35613120733451,0.162886959353576,0,0,0,0,0.754420319023592,0,0,0,0,0.712994756769443,0.316036757935816,0,0,16.000661470428,1.44048875225048,0,1.28602221018955,1.77340233642274,1.07021290561242,3.78462747384878,1.522324745573,0,0,0,0,0.161464426695906,0.482503399425247,0,0,0.291480836629851,12.6089205367147,0,0,0.185194527369712,0,0,0,0,0,0,0,0.474503990371703,0.609958401380546,0.324016022465404,0.627264888043406,0.87345025498471,0.269728692769641,0,0,0.129614973291793,0.621339313086926,0,2.24274819065968,2.81279433777066,2.91676782516071,3.22899558694328,3.54807863530634,1.76035857968631,0.39061315453185,0.314578033277133,0,0,0.316011120628178,0,0,0.389762468933385,0,0.596044064343795,0.120195449519969,0.295379054349154,0,0,0,0.0974578807397524,0.192423683280659,0,0.680191150845634,0,0.0897138566094757,0,0.19318959403219,0,0.549454872801795,0,0,28.2375921308533,30.3814656094737,24.6345070778941,21.997207339992,37.6795385873853,41.5466643564335,24.9758325085768,34.2244114450408,30.8136838109259,32.1011393286128,0.207574695168353,1.19707462020309,1.53660245178721,2.67417388775123,1.04806581313991,1.10306105070008,2.889207461421,2.47242068686673,3.85103051510178,1.01078884705519,2.5347929989024,2.82939512079114,2.43467919421694,2.75308155340938,3.10151532360312,2.85776214769844,1.85414921511769,1.92909220463705,0.824171801606613,1.76638704161277,1.71434626192708,2.30718548007139,2.62279808942053,3.34296758254356,1.97629698872194,2.5384382367503,1.82927972872773,0.789209134313529,1.62964936615034,3.36685362994643,2.01679530811096,1.87158516513571,2.86461730218783,1.23949472948773,1.15743966588685,3.49734809113124,1.87145286756327,1.28922632428979,0.382576664137687,0.882365676478062,0.695603506861264|short_description=p1@Kcnj3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=16519 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=B1AYE4,P63250,Q3ZAT1 | |||
|association_with_transcript=0bp_to_ENSMUST00000112632,ENSMUST00000112633,NM_008426_5end | |||
|cluster_id=chr2:55289511..55289593,+ | |||
|description=CAGE_peak_1_at_Kcnj3_5end | |||
|id=chr2:55289511..55289593,+ | |||
|ontology_enrichment_celltype=CL:0000540!9.82e-12!33;CL:0000047!9.82e-12!33;CL:0000031!9.82e-12!33;CL:0000404!9.82e-12!33;CL:0000117!2.04e-10!23;CL:0000337!2.04e-10!23;CL:0000393!5.59e-09!39;CL:0000211!5.59e-09!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.04e-14,33;CL:0000047,1.04e-14,33;CL:0000031,1.04e-14,33;CL:0000404,1.04e-14,33;CL:0000117,9.25e-13,23;CL:0000337,9.25e-13,23;CL:0000393,1.09e-11,39;CL:0000211,1.09e-11,39;CL:0002319,8.55e-09,43;CL:0000221,2.27e-08,44;CL:0000133,2.27e-08,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.41e-23!73;UBERON:0005743!8.41e-23!73;UBERON:0000033!1.99e-21!63;UBERON:0000073!2.95e-21!75;UBERON:0001016!2.95e-21!75;UBERON:0002346!3.21e-20!71;UBERON:0003075!3.21e-20!71;UBERON:0007284!3.21e-20!71;UBERON:0001049!3.47e-20!52;UBERON:0005068!3.47e-20!52;UBERON:0006241!3.47e-20!52;UBERON:0007135!3.47e-20!52;UBERON:0000955!6.08e-20!50;UBERON:0006238!6.08e-20!50;UBERON:0002616!3.59e-19!49;UBERON:0003056!1.92e-18!49;UBERON:0004121!6.92e-18!102;UBERON:0000924!6.92e-18!102;UBERON:0006601!6.92e-18!102;UBERON:0003080!6.48e-16!40;UBERON:0002020!1.04e-15!34;UBERON:0002780!2.92e-15!39;UBERON:0001890!2.92e-15!39;UBERON:0006240!2.92e-15!39;UBERON:0002791!1.33e-13!29;UBERON:0003528!1.33e-13!29;UBERON:0001893!1.33e-13!29;UBERON:0000025!1.52e-12!114;UBERON:0004111!5.16e-11!122;UBERON:0007811!1.10e-10!86;UBERON:0000956!3.00e-10!21;UBERON:0001869!3.00e-10!21;UBERON:0000203!3.00e-10!21;UBERON:0000153!4.51e-09!94;UBERON:0002021!2.10e-08!10;UBERON:0000411!2.10e-08!10;UBERON:0001950!2.10e-08!10;UBERON:0002619!2.22e-08!17;UBERON:0007100!6.93e-08!18;UBERON:0000948!6.93e-08!18;UBERON:0005498!6.93e-08!18;UBERON:0004140!6.93e-08!18;UBERON:0009881!6.93e-08!18;UBERON:0004141!6.93e-08!18;UBERON:0003084!6.93e-08!18;UBERON:0007005!6.93e-08!18;UBERON:0004139!6.93e-08!18;UBERON:0004291!6.93e-08!18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.85e-32,92;UBERON:0001017,5.93e-30,73;UBERON:0002346,3.86e-29,64;UBERON:0003075,3.86e-29,64;UBERON:0007284,3.86e-29,64;UBERON:0001016,1.73e-28,75;UBERON:0000073,8.18e-27,54;UBERON:0004121,1.69e-25,95;UBERON:0000924,1.69e-25,95;UBERON:0006601,1.69e-25,95;UBERON:0001049,3.46e-25,52;UBERON:0005068,3.46e-25,52;UBERON:0006241,3.46e-25,52;UBERON:0007135,3.46e-25,52;UBERON:0003056,3.94e-23,49;UBERON:0010371,9.50e-23,73;UBERON:0000955,1.70e-22,47;UBERON:0006238,1.70e-22,47;UBERON:0002616,1.53e-21,46;UBERON:0003080,6.26e-20,40;UBERON:0002020,2.32e-19,34;UBERON:0002780,4.23e-19,39;UBERON:0001890,4.23e-19,39;UBERON:0006240,4.23e-19,39;UBERON:0003528,1.07e-16,29;UBERON:0002791,1.07e-16,29;UBERON:0001893,1.07e-16,29;UBERON:0000025,2.60e-14,114;UBERON:0000956,1.88e-12,21;UBERON:0001869,1.88e-12,21;UBERON:0000203,1.88e-12,21;UBERON:0004111,6.91e-12,122;UBERON:0002021,3.22e-10,10;UBERON:0000411,3.22e-10,10;UBERON:0001950,3.22e-10,10;UBERON:0002619,4.32e-10,17;UBERON:0007100,2.32e-09,18;UBERON:0000948,2.32e-09,18;UBERON:0005498,2.32e-09,18;UBERON:0004140,2.32e-09,18;UBERON:0009881,2.32e-09,18;UBERON:0004141,2.32e-09,18;UBERON:0003084,2.32e-09,18;UBERON:0007005,2.32e-09,18;UBERON:0004139,2.32e-09,18;UBERON:0004291,2.32e-09,18 | |||
|phase1_expression=0,0,0,0,0,0.33575854382378,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,5.44277056966847,0,0,0,0,0,0,0.215471232685889,0,0,0,0,0,15.8481681015439,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0.194429899074283,0,0,0,0,0,0,0.286533439938757,3.09403255366465,3.43937983461316,5.28990979272033,5.70448263155561,0,0.889294796111139,0,0,0,0,0,6.11768712620018,4.05017814995072,3.57552434297349,3.42781181284564,3.75476519617743,3.79721477566358,2.1086003624012,1.83843757322004,13.2139057199266,15.0671058940522,10.1380311949121,3.03338461779446,2.74462930807229,4.16730696445408,5.58365998002762,9.56696437053856,12.071061574368,6.18720029494702,4.8406371471695,5.96478226640962,0,0,0,0,0,0,0,0,0.702222100658759,0,0,0,0.281686839553361,0,0,0,0,0,0,0.34255163915718,0,0,0.173485326766136,0,0.230615497256059,0.150722640552623,0.23517741427141,0.125666591329675,0,0.144599356919912,0,0.808834249737046,0.220841518460394,0,0,33.6697916563279,22.4107976290397,0,0,0,0,20.5213175984607,14.640019290196,2.89005009859588,34.7648640384553,34.5215867395946,17.6619837875626,19.9556753573342,0.203678727700633,0.124406970610093,0.252722758433675,1.47309299120532,4.29397461776922,4.82794419310293,3.96136685571768,2.10986744970001,2.58538696775046,1.7935920839879,2.34254311399322,2.84573707812917,0.215567992932842,0,0.703804496655795,0.43839146485515,0,0.348252166522167,0,0.796137067273973,0,0,0,8.28503090142008,7.50483391939508,8.64297895012871,7.10234206755631,6.49321964766433,7.25055430570678,8.13868806626427,6.70683503499048,9.5747580741079,5.9241545968853,7.22336841948019,7.05298643048945,8.18719929581861,8.12335426576887,13.6890547135579,41.8476997642613,8.02655976558419,0,0,0.426576501070468,0.464473343720877,0.128867461322093,0.605050573870028,0.22237804384487,0.760902504450237,0,0.329397909448022,0,0.198956472041151,0.19496408711912,0,0,0.199141273254367,0,0.114248512609729,0,0.203651327845314,0.193952487167626,0.0701358198903186,0,0,0,0,0,0.500535317148282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29327233116623,0.568474235311454,0.977789858652155,1.01847051465113,1.17345124144251,0.670025029767263,0.476087281772027,0.975668239288994,1.10344600874334,0.44292937929755,0.478364305972461,0.491589944147214,0.518054945597687,0.433947175744535,0,0,0,0,16.3761601787548,11.7211686592203,0,0,1.57754109708128,1.17131623288992,1.50796378412959,1.43381278771531,5.56996685205985,5.09537755419898,3.23848561339915,4.38383786866968,3.55759000151871,49.1621614125365,4.25820255624806,0.35613120733451,0.162886959353576,0,0,0,0,0.754420319023592,0,0,0,0,0.712994756769443,0.316036757935816,0,0,16.000661470428,1.44048875225048,0,1.28602221018955,1.77340233642274,1.07021290561242,3.78462747384878,1.522324745573,0,0,0,0,0.161464426695906,0.482503399425247,0,0,0.291480836629851,12.6089205367147,0,0,0.185194527369712,0,0,0,0,0,0,0,0.474503990371703,0.609958401380546,0.324016022465404,0.627264888043406,0.87345025498471,0.269728692769641,0,0,0.129614973291793,0.621339313086926,0,2.24274819065968,2.81279433777066,2.91676782516071,3.22899558694328,3.54807863530634,1.76035857968631,0.39061315453185,0.314578033277133,0,0,0.316011120628178,0,0,0.389762468933385,0,0.596044064343795,0.120195449519969,0.295379054349154,0,0,0,0.0974578807397524,0.192423683280659,0,0.680191150845634,0,0.0897138566094757,0,0.19318959403219,0,0.549454872801795,0,0,28.2375921308533,30.3814656094737,24.6345070778941,21.997207339992,37.6795385873853,41.5466643564335,24.9758325085768,34.2244114450408,30.8136838109259,32.1011393286128,0.207574695168353,1.19707462020309,1.53660245178721,2.67417388775123,1.04806581313991,1.10306105070008,2.889207461421,2.47242068686673,3.85103051510178,1.01078884705519,2.5347929989024,2.82939512079114,2.43467919421694,2.75308155340938,3.10151532360312,2.85776214769844,1.85414921511769,1.92909220463705,0.824171801606613,1.76638704161277,1.71434626192708,2.30718548007139,2.62279808942053,3.34296758254356,1.97629698872194,2.5384382367503,1.82927972872773,0.789209134313529,1.62964936615034,3.36685362994643,2.01679530811096,1.87158516513571,2.86461730218783,1.23949472948773,1.15743966588685,3.49734809113124,1.87145286756327,1.28922632428979,0.382576664137687,0.882365676478062,0.695603506861264 | |||
|short_description=p1@Kcnj3 | |||
}} |
Latest revision as of 18:53, 26 September 2015
Short description: | p1@Kcnj3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Kcnj3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000112632, ENSMUST00000112633, NM_008426_5end |
EntrezGene: | Kcnj3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.04e-14 | 33 |
neuronal stem cell | 1.04e-14 | 33 |
neuroblast | 1.04e-14 | 33 |
electrically signaling cell | 1.04e-14 | 33 |
CNS neuron (sensu Vertebrata) | 9.25e-13 | 23 |
neuroblast (sensu Vertebrata) | 9.25e-13 | 23 |
electrically responsive cell | 1.09e-11 | 39 |
electrically active cell | 1.09e-11 | 39 |
neural cell | 8.55e-09 | 43 |
ectodermal cell | 2.27e-08 | 44 |
neurectodermal cell | 2.27e-08 | 44 |