FFCP PHASE1:Mm9::chr15:79604838..79604904,-: Difference between revisions
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{{FFCP|EntrezGene=54152|HGNC=|MCL_coexpression_id=1511|UniProt=Q9DCM4|association_with_transcript=0bp_to_ENSMUST00000023055,NM_017470,uc007wuj.2_5end|description=CAGE_peak_1_at_Dnalc4_5end|id=chr15:79604838..79604904,-|ontology_enrichment_celltype=CL:0000221!1.96e-12!44;CL:0000133!1.96e-12!44;CL:0002319!7.34e-12!43;CL:0000055!3.87e-11!50;CL:0000540!6.41e-08!33;CL:0000047!6.41e-08!33;CL:0000031!6.41e-08!33;CL:0000404!6.41e-08!33;CL:0000393!7.20e-08!39;CL:0000211!7.20e-08!39;CL:0000117!2.56e-07!23;CL:0000337!2.56e-07!23|ontology_enrichment_celltype_v019_2=CL:0000221,1.96e-12,44;CL:0000133,1.96e-12,44;CL:0002319,7.34e-12,43;CL:0000540,6.41e-08,33;CL:0000047,6.41e-08,33;CL:0000031,6.41e-08,33;CL:0000404,6.41e-08,33;CL:0000393,7.20e-08,39;CL:0000211,7.20e-08,39;CL:0000117,2.56e-07,23;CL:0000337,2.56e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.21e-21!73;UBERON:0005743!1.21e-21!73;UBERON:0000073!3.08e-21!75;UBERON:0001016!3.08e-21!75;UBERON:0000033!8.99e-19!63;UBERON:0003056!1.23e-18!49;UBERON:0001049!4.88e-17!52;UBERON:0005068!4.88e-17!52;UBERON:0006241!4.88e-17!52;UBERON:0007135!4.88e-17!52;UBERON:0004121!7.00e-17!102;UBERON:0000924!7.00e-17!102;UBERON:0006601!7.00e-17!102;UBERON:0002780!8.69e-17!39;UBERON:0001890!8.69e-17!39;UBERON:0006240!8.69e-17!39;UBERON:0000955!1.32e-16!50;UBERON:0006238!1.32e-16!50;UBERON:0003080!1.91e-16!40;UBERON:0002346!2.86e-16!71;UBERON:0003075!2.86e-16!71;UBERON:0007284!2.86e-16!71;UBERON:0002616!5.22e-16!49;UBERON:0002791!1.82e-14!29;UBERON:0003528!1.82e-14!29;UBERON:0001893!1.82e-14!29;UBERON:0002020!2.35e-14!34;UBERON:0000153!1.76e-12!94;UBERON:0007811!1.52e-11!86;UBERON:0000956!1.78e-11!21;UBERON:0001869!1.78e-11!21;UBERON:0000203!1.78e-11!21;UBERON:0002619!4.14e-09!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.21e-21,73;UBERON:0001016,3.08e-21,75;UBERON:0002346,4.80e-20,64;UBERON:0003075,4.80e-20,64;UBERON:0007284,4.80e-20,64;UBERON:0004121,8.57e-20,95;UBERON:0000924,8.57e-20,95;UBERON:0006601,8.57e-20,95;UBERON:0003056,1.23e-18,49;UBERON:0010371,3.29e-18,73;UBERON:0000955,1.20e-17,47;UBERON:0006238,1.20e-17,47;UBERON:0001049,4.88e-17,52;UBERON:0005068,4.88e-17,52;UBERON:0006241,4.88e-17,52;UBERON:0007135,4.88e-17,52;UBERON:0002616,4.91e-17,46;UBERON:0002780,8.69e-17,39;UBERON:0001890,8.69e-17,39;UBERON:0006240,8.69e-17,39;UBERON:0003080,1.91e-16,40;UBERON:0000073,2.67e-16,54;UBERON:0003528,1.82e-14,29;UBERON:0002791,1.82e-14,29;UBERON:0001893,1.82e-14,29;UBERON:0002020,2.35e-14,34;UBERON:0010314,6.80e-14,92;UBERON:0000956,1.78e-11,21;UBERON:0001869,1.78e-11,21;UBERON:0000203,1.78e-11,21;UBERON:0002619,4.14e-09,17|phase1_expression=35.8733417514738,9.07336059862339,6.3699893514535,6.95667686005709,5.00895729946347,9.40123922706583,5.84031601488814,4.9066862907799,0.140788722151667,0.468129052643987,1.71217968225505,2.87179772383211,2.73921167889929,5.15780374272085,2.99798785634096,3.84703008040669,4.89693314689703,7.41336088591859,6.44437837946972,4.2438965179803,34.8677489619386,16.5815888505478,14.3659884026414,5.91971964335605,6.19405058881359,6.89078356938024,6.46142994238612,5.817723282519,10.6413114895569,12.3494763582366,11.5299865540758,10.1604907753541,6.1506478758457,0,10.3986583110459,10.472782657585,7.55426618170766,13.393012183581,13.2827008569046,17.7998072951091,12.9410927366823,18.442228093878,17.4783727091215,23.4168081434574,24.3304634926835,14.5001934207728,46.9434806608824,43.1689809633284,49.2097049325217,35.3862416315196,23.5177188330609,31.6255641602937,5.36904339384756,2.90144856804538,4.36921938885203,9.77585856936598,14.3266719969378,14.9544906760458,31.7636843549569,26.4495489636016,32.9592329823213,35.2398313351897,20.4537803105562,32.3963898221304,29.6659908770092,31.9716051725745,32.9560121570245,59.9380556301625,31.8327109787026,42.1218527594875,39.3307677727084,20.2812198926701,20.3199057675484,33.1950065872525,38.1464974652581,34.0110951045708,11.0115880999389,18.386976684267,12.4421291937557,31.5208227675163,27.3548054371205,21.3574481928272,19.821992929098,16.3201156909187,24.4477196442896,13.258286346315,12.386336229522,21.8087351615602,11.4346551933108,17.3058872644539,19.7107852317141,10.3250865237766,5.439770669662,5.93673510801599,6.49776417447669,2.68816132258401,12.4995533917259,17.2134625803838,23.1209544096553,29.3271846843582,34.36579442551,25.6652954828636,15.2883143823987,21.3320010945999,10.1750789275271,11.4011939463794,14.6602089054287,9.24889425724386,6.47344709117929,10.8362761517322,14.052311468057,9.74289530598852,11.5307748628029,9.49552635481522,8.70156432804216,13.0693254982862,7.41584903203122,6.79616977523585,7.07688441559899,10.1913115466868,7.50861162765338,9.69750506270444,9.31958806090611,15.517382241612,19.0596503200244,11.7510245395952,17.2533779288525,8.99854096490112,16.1379188382792,13.9305294646485,25.6200337578431,31.0366249718775,28.5071885115333,26.8501230196847,17.454195743003,19.3067103050632,19.1458004038595,11.1966273549084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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=54152 | |||
|HGNC= | |||
|MCL_coexpression_id=1511 | |||
|TSSclassifier=NA | |||
|UniProt=Q9DCM4 | |||
|association_with_transcript=0bp_to_ENSMUST00000023055,NM_017470,uc007wuj.2_5end | |||
|cluster_id=chr15:79604838..79604904,- | |||
|description=CAGE_peak_1_at_Dnalc4_5end | |||
|id=chr15:79604838..79604904,- | |||
|ontology_enrichment_celltype=CL:0000221!1.96e-12!44;CL:0000133!1.96e-12!44;CL:0002319!7.34e-12!43;CL:0000055!3.87e-11!50;CL:0000540!6.41e-08!33;CL:0000047!6.41e-08!33;CL:0000031!6.41e-08!33;CL:0000404!6.41e-08!33;CL:0000393!7.20e-08!39;CL:0000211!7.20e-08!39;CL:0000117!2.56e-07!23;CL:0000337!2.56e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.96e-12,44;CL:0000133,1.96e-12,44;CL:0002319,7.34e-12,43;CL:0000540,6.41e-08,33;CL:0000047,6.41e-08,33;CL:0000031,6.41e-08,33;CL:0000404,6.41e-08,33;CL:0000393,7.20e-08,39;CL:0000211,7.20e-08,39;CL:0000117,2.56e-07,23;CL:0000337,2.56e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.21e-21!73;UBERON:0005743!1.21e-21!73;UBERON:0000073!3.08e-21!75;UBERON:0001016!3.08e-21!75;UBERON:0000033!8.99e-19!63;UBERON:0003056!1.23e-18!49;UBERON:0001049!4.88e-17!52;UBERON:0005068!4.88e-17!52;UBERON:0006241!4.88e-17!52;UBERON:0007135!4.88e-17!52;UBERON:0004121!7.00e-17!102;UBERON:0000924!7.00e-17!102;UBERON:0006601!7.00e-17!102;UBERON:0002780!8.69e-17!39;UBERON:0001890!8.69e-17!39;UBERON:0006240!8.69e-17!39;UBERON:0000955!1.32e-16!50;UBERON:0006238!1.32e-16!50;UBERON:0003080!1.91e-16!40;UBERON:0002346!2.86e-16!71;UBERON:0003075!2.86e-16!71;UBERON:0007284!2.86e-16!71;UBERON:0002616!5.22e-16!49;UBERON:0002791!1.82e-14!29;UBERON:0003528!1.82e-14!29;UBERON:0001893!1.82e-14!29;UBERON:0002020!2.35e-14!34;UBERON:0000153!1.76e-12!94;UBERON:0007811!1.52e-11!86;UBERON:0000956!1.78e-11!21;UBERON:0001869!1.78e-11!21;UBERON:0000203!1.78e-11!21;UBERON:0002619!4.14e-09!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.21e-21,73;UBERON:0001016,3.08e-21,75;UBERON:0002346,4.80e-20,64;UBERON:0003075,4.80e-20,64;UBERON:0007284,4.80e-20,64;UBERON:0004121,8.57e-20,95;UBERON:0000924,8.57e-20,95;UBERON:0006601,8.57e-20,95;UBERON:0003056,1.23e-18,49;UBERON:0010371,3.29e-18,73;UBERON:0000955,1.20e-17,47;UBERON:0006238,1.20e-17,47;UBERON:0001049,4.88e-17,52;UBERON:0005068,4.88e-17,52;UBERON:0006241,4.88e-17,52;UBERON:0007135,4.88e-17,52;UBERON:0002616,4.91e-17,46;UBERON:0002780,8.69e-17,39;UBERON:0001890,8.69e-17,39;UBERON:0006240,8.69e-17,39;UBERON:0003080,1.91e-16,40;UBERON:0000073,2.67e-16,54;UBERON:0003528,1.82e-14,29;UBERON:0002791,1.82e-14,29;UBERON:0001893,1.82e-14,29;UBERON:0002020,2.35e-14,34;UBERON:0010314,6.80e-14,92;UBERON:0000956,1.78e-11,21;UBERON:0001869,1.78e-11,21;UBERON:0000203,1.78e-11,21;UBERON:0002619,4.14e-09,17 | |||
|phase1_expression=35.8733417514738,9.07336059862339,6.3699893514535,6.95667686005709,5.00895729946347,9.40123922706583,5.84031601488814,4.9066862907799,0.140788722151667,0.468129052643987,1.71217968225505,2.87179772383211,2.73921167889929,5.15780374272085,2.99798785634096,3.84703008040669,4.89693314689703,7.41336088591859,6.44437837946972,4.2438965179803,34.8677489619386,16.5815888505478,14.3659884026414,5.91971964335605,6.19405058881359,6.89078356938024,6.46142994238612,5.817723282519,10.6413114895569,12.3494763582366,11.5299865540758,10.1604907753541,6.1506478758457,0,10.3986583110459,10.472782657585,7.55426618170766,13.393012183581,13.2827008569046,17.7998072951091,12.9410927366823,18.442228093878,17.4783727091215,23.4168081434574,24.3304634926835,14.5001934207728,46.9434806608824,43.1689809633284,49.2097049325217,35.3862416315196,23.5177188330609,31.6255641602937,5.36904339384756,2.90144856804538,4.36921938885203,9.77585856936598,14.3266719969378,14.9544906760458,31.7636843549569,26.4495489636016,32.9592329823213,35.2398313351897,20.4537803105562,32.3963898221304,29.6659908770092,31.9716051725745,32.9560121570245,59.9380556301625,31.8327109787026,42.1218527594875,39.3307677727084,20.2812198926701,20.3199057675484,33.1950065872525,38.1464974652581,34.0110951045708,11.0115880999389,18.386976684267,12.4421291937557,31.5208227675163,27.3548054371205,21.3574481928272,19.821992929098,16.3201156909187,24.4477196442896,13.258286346315,12.386336229522,21.8087351615602,11.4346551933108,17.3058872644539,19.7107852317141,10.3250865237766,5.439770669662,5.93673510801599,6.49776417447669,2.68816132258401,12.4995533917259,17.2134625803838,23.1209544096553,29.3271846843582,34.36579442551,25.6652954828636,15.2883143823987,21.3320010945999,10.1750789275271,11.4011939463794,14.6602089054287,9.24889425724386,6.47344709117929,10.8362761517322,14.052311468057,9.74289530598852,11.5307748628029,9.49552635481522,8.70156432804216,13.0693254982862,7.41584903203122,6.79616977523585,7.07688441559899,10.1913115466868,7.50861162765338,9.69750506270444,9.31958806090611,15.517382241612,19.0596503200244,11.7510245395952,17.2533779288525,8.99854096490112,16.1379188382792,13.9305294646485,25.6200337578431,31.0366249718775,28.5071885115333,26.8501230196847,17.454195743003,19.3067103050632,19.1458004038595,11.1966273549084,10.3616330957807,17.8875577503503,19.6481868873683,17.4725599369439,17.6460887209242,17.1803492332715,20.2068402479444,21.7793324484245,24.6435535592087,19.1440494346872,20.6945273215529,19.4779262572854,17.7710635405588,22.5771604400402,18.0730711996639,15.3230953269753,15.8452245034116,18.5101868141199,12.6398373716382,10.808612098818,12.5031939734061,9.73491130916859,10.3191466391682,11.523971933505,13.2577051927718,14.1670246858131,14.0383072727514,11.39416329277,16.901224288176,15.6465558772007,13.4939076929054,13.9542344467231,15.4030738137126,16.3743985916372,12.0752563410078,16.7758023450465,26.9171134162083,24.4912977462697,10.2429822724977,10.3135720998782,14.0770245353254,13.9342003116263,13.0156135935314,11.2942773789072,7.11609740303585,13.1255682017666,9.49058123089023,10.5407331023367,15.834118154417,13.5290400987983,13.062593836981,11.6846523125049,7.99710784536369,8.56307474993779,26.5535061334314,18.7367560679955,18.0332377076929,15.2738495883986,19.3952487167626,16.0611027548829,18.7180149887802,18.4512684974503,14.6008816892479,16.6586171294431,6.52195779591728,5.33904338291501,5.89676985339609,3.37293168577281,5.68008339887808,6.02942899381042,6.87489799809833,8.91858026097513,6.64754429777645,5.49122826376163,7.18841032636773,11.9085103253921,6.24075346229121,7.82994521636046,7.17589654087649,7.23665282045051,15.1497615936616,19.3281240005894,17.2742875028547,20.0299201214722,13.1426539041561,17.9231695462743,25.7087132156895,14.0496226457615,15.4482441224067,16.8313164133069,16.7427507090361,14.7476983244164,17.2684981865896,15.1881511510587,22.6186925908908,13.5976420954677,7.37646409528554,6.89841865761831,12.6834966090356,13.0104972117346,16.3934945376675,9.08895337935743,16.7219356290616,21.4741309363151,17.0184484208911,14.3381278771531,14.704712489438,13.3045969470751,18.6212922770451,12.8592577480977,18.1832377855401,32.7747742750243,11.9229671574946,29.3808246050971,19.3835481630756,18.9715641418416,13.2745138339963,20.1507928008635,17.5347663039556,11.5049098651098,15.651000322681,15.6791925451403,13.9551278310839,12.7236805317127,14.2598951353889,11.3773232856894,8.4334886859999,11.3449097573006,13.6175842301515,20.1668425315067,28.5882691159887,24.8630960636647,17.0246624296583,20.5124140242381,19.5813334516524,27.0973804711993,14.54964589995,14.4045808187398,10.3648347085832,12.8611277294354,12.4327608555847,11.7007074360622,14.2053089363732,15.7575263755259,12.5336759750836,14.0923229527987,5.63873906632914,15.8917888331681,10.926477114813,5.65105371014073,4.23752105935178,5.26189798375002,14.4481665494777,14.8348539463077,11.4705978257672,13.3653886522116,18.0311516341247,14.435682166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| |||
|short_description=p1@Dnalc4 | |||
}} |
Latest revision as of 03:12, 27 September 2015
Short description: | p1@Dnalc4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Dnalc4_5end |
Coexpression cluster: | MCL_coexpression_mm9:1511 |
Association with transcript: | 0bp_to_ENSMUST00000023055, NM_017470, uc007wuj.2_5end |
EntrezGene: | Dnalc4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.96e-12 | 44 |
neurectodermal cell | 1.96e-12 | 44 |
neural cell | 7.34e-12 | 43 |
neuron | 6.41e-08 | 33 |
neuronal stem cell | 6.41e-08 | 33 |
neuroblast | 6.41e-08 | 33 |
electrically signaling cell | 6.41e-08 | 33 |
electrically responsive cell | 7.20e-08 | 39 |
electrically active cell | 7.20e-08 | 39 |
CNS neuron (sensu Vertebrata) | 2.56e-07 | 23 |
neuroblast (sensu Vertebrata) | 2.56e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.21e-21 | 73 |
nervous system | 3.08e-21 | 75 |
neurectoderm | 4.80e-20 | 64 |
neural plate | 4.80e-20 | 64 |
presumptive neural plate | 4.80e-20 | 64 |
ectoderm-derived structure | 8.57e-20 | 95 |
ectoderm | 8.57e-20 | 95 |
presumptive ectoderm | 8.57e-20 | 95 |
pre-chordal neural plate | 1.23e-18 | 49 |
ecto-epithelium | 3.29e-18 | 73 |
brain | 1.20e-17 | 47 |
future brain | 1.20e-17 | 47 |
neural tube | 4.88e-17 | 52 |
neural rod | 4.88e-17 | 52 |
future spinal cord | 4.88e-17 | 52 |
neural keel | 4.88e-17 | 52 |
regional part of brain | 4.91e-17 | 46 |
regional part of forebrain | 8.69e-17 | 39 |
forebrain | 8.69e-17 | 39 |
future forebrain | 8.69e-17 | 39 |
anterior neural tube | 1.91e-16 | 40 |
regional part of nervous system | 2.67e-16 | 54 |
brain grey matter | 1.82e-14 | 29 |
regional part of telencephalon | 1.82e-14 | 29 |
telencephalon | 1.82e-14 | 29 |
gray matter | 2.35e-14 | 34 |
structure with developmental contribution from neural crest | 6.80e-14 | 92 |
cerebral cortex | 1.78e-11 | 21 |
cerebral hemisphere | 1.78e-11 | 21 |
pallium | 1.78e-11 | 21 |
regional part of cerebral cortex | 4.14e-09 | 17 |