FFCP PHASE1:Mm9::chr8:108225042..108225090,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=56513 | |EntrezGene=56513 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=346 | |||
|TSSclassifier=NA | |||
|UniProt=D3Z2R1 | |UniProt=D3Z2R1 | ||
|association_with_transcript=0bp_to_ENSMUST00000098444,NM_001047436,uc009ndu.1_5end | |association_with_transcript=0bp_to_ENSMUST00000098444,NM_001047436,uc009ndu.1_5end | ||
|cluster_id=chr8:108225042..108225090,+ | |||
|description=CAGE_peak_1_at_Pard6a_5end | |description=CAGE_peak_1_at_Pard6a_5end | ||
|id=chr8:108225042..108225090,+ | |id=chr8:108225042..108225090,+ | ||
|ontology_enrichment_celltype=CL:0000221!3.73e-14!44;CL:0000133!3.73e-14!44;CL:0002319!1.22e-13!43;CL:0000055!1.82e-13!50;CL:0000723!6.99e-12!91;CL:0000048!6.99e-12!91;CL:0000034!9.72e-11!97;CL:0000393!2.24e-09!39;CL:0000211!2.24e-09!39;CL:0000540!6.44e-09!33;CL:0000047!6.44e-09!33;CL:0000031!6.44e-09!33;CL:0000404!6.44e-09!33;CL:0002371!7.68e-09!118;CL:0000548!7.98e-09!115;CL:0000004!7.98e-09!115;CL:0000255!7.98e-09!115;CL:0000144!5.05e-08!121;CL:0000012!5.05e-08!121;CL:0000117!8.05e-08!23;CL:0000337!8.05e-08!23;CL:0000219!3.56e-07!54 | |ontology_enrichment_celltype=CL:0000221!3.73e-14!44;CL:0000133!3.73e-14!44;CL:0002319!1.22e-13!43;CL:0000055!1.82e-13!50;CL:0000723!6.99e-12!91;CL:0000048!6.99e-12!91;CL:0000034!9.72e-11!97;CL:0000393!2.24e-09!39;CL:0000211!2.24e-09!39;CL:0000540!6.44e-09!33;CL:0000047!6.44e-09!33;CL:0000031!6.44e-09!33;CL:0000404!6.44e-09!33;CL:0002371!7.68e-09!118;CL:0000548!7.98e-09!115;CL:0000004!7.98e-09!115;CL:0000255!7.98e-09!115;CL:0000144!5.05e-08!121;CL:0000012!5.05e-08!121;CL:0000117!8.05e-08!23;CL:0000337!8.05e-08!23;CL:0000219!3.56e-07!54 | ||
|ontology_enrichment_celltype_v019_2=CL:0000221,3.73e-14,44;CL:0000133,3.73e-14,44;CL:0002319,1.22e-13,43;CL:0000723,6.99e-12,91;CL:0000048,6.99e-12,91;CL:0000034,9.72e-11,97;CL:0000393,2.24e-09,39;CL:0000211,2.24e-09,39;CL:0000540,6.44e-09,33;CL:0000047,6.44e-09,33;CL:0000031,6.44e-09,33;CL:0000404,6.44e-09,33;CL:0000117,8.05e-08,23;CL:0000337,8.05e-08,23;CL:0000219,3.56e-07,54 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.62e-24!75;UBERON:0001016!1.62e-24!75;UBERON:0001017!1.74e-24!73;UBERON:0005743!1.74e-24!73;UBERON:0001049!1.05e-18!52;UBERON:0005068!1.05e-18!52;UBERON:0006241!1.05e-18!52;UBERON:0007135!1.05e-18!52;UBERON:0002616!7.16e-18!49;UBERON:0000955!1.13e-17!50;UBERON:0006238!1.13e-17!50;UBERON:0004121!1.48e-17!102;UBERON:0000924!1.48e-17!102;UBERON:0006601!1.48e-17!102;UBERON:0000033!2.62e-17!63;UBERON:0002346!9.58e-17!71;UBERON:0003075!9.58e-17!71;UBERON:0007284!9.58e-17!71;UBERON:0003080!6.15e-16!40;UBERON:0002780!1.52e-15!39;UBERON:0001890!1.52e-15!39;UBERON:0006240!1.52e-15!39;UBERON:0003056!1.74e-15!49;UBERON:0002020!3.19e-12!34;UBERON:0007811!1.43e-11!86;UBERON:0002791!2.74e-11!29;UBERON:0003528!2.74e-11!29;UBERON:0001893!2.74e-11!29;UBERON:0000153!6.52e-10!94;UBERON:0000956!5.21e-09!21;UBERON:0001869!5.21e-09!21;UBERON:0000203!5.21e-09!21;UBERON:0002619!3.80e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.62e-24,75;UBERON:0001017,1.74e-24,73;UBERON:0004121,3.67e-19,95;UBERON:0000924,3.67e-19,95;UBERON:0006601,3.67e-19,95;UBERON:0002346,5.38e-19,64;UBERON:0003075,5.38e-19,64;UBERON:0007284,5.38e-19,64;UBERON:0000073,5.75e-19,54;UBERON:0001049,1.05e-18,52;UBERON:0005068,1.05e-18,52;UBERON:0006241,1.05e-18,52;UBERON:0007135,1.05e-18,52;UBERON:0002616,1.46e-17,46;UBERON:0000955,2.39e-17,47;UBERON:0006238,2.39e-17,47;UBERON:0003080,6.15e-16,40;UBERON:0010371,8.34e-16,73;UBERON:0002780,1.52e-15,39;UBERON:0001890,1.52e-15,39;UBERON:0006240,1.52e-15,39;UBERON:0003056,1.74e-15,49;UBERON:0010314,3.72e-15,92;UBERON:0002020,3.19e-12,34;UBERON:0003528,2.74e-11,29;UBERON:0002791,2.74e-11,29;UBERON:0001893,2.74e-11,29;UBERON:0000956,5.21e-09,21;UBERON:0001869,5.21e-09,21;UBERON:0000203,5.21e-09,21;UBERON:0002619,3.80e-08,17 | |||
|phase1_expression=13.1322054625931,2.09385244583617,2.27499619694768,2.41971369045464,3.00537437967808,2.51818907867835,4.20502753071946,6.32704284863724,5.77233760821834,6.31974221069382,4.96532107853964,3.98860794976682,6.50562773738582,10.2281870830227,6.66219523631325,9.11138703254217,11.1929900500503,9.14840279538889,6.7186072466812,8.48779303596061,11.8210173309987,18.5674078745655,17.5003858723087,4.63978026100879,6.42345986988076,1.72269589234506,4.30761996159075,4.30942465371778,2.85035129184561,2.52030129759931,3.54768817048488,19.6859508772486,19.6820732027062,0,4.33277429626912,5.98444723290572,5.9209113316087,6.69650609179052,9.37602413428561,5.23523743973798,12.9410927366823,6.83045484958446,7.2826552954673,6.79842817068117,6.18399280439039,6.60768307782054,26.6013057078333,30.3054967368821,17.7945808014922,16.9154012194627,17.0783434382942,18.6878333674463,13.5903910906766,5.80289713609076,7.05796978199174,8.2323019531503,13.1805382371828,10.8291139378263,9.91350658212029,13.7537654610729,8.87363964908651,9.4876468979357,16.0073063300005,15.2982951937838,10.8775299882367,11.3676818391376,24.2676089519908,43.4166685013357,8.08778976006126,12.5555522648472,10.9368979902719,10.5690864229407,13.0312439161452,11.1466627285608,10.6388472830242,17.4651569455904,9.91042928994498,6.51205424234457,8.60196586234964,10.0233578674947,11.8933936683133,8.33461392890816,9.49222196604695,8.4414391504752,9.62628960993904,7.07108605136802,7.68807076315156,7.82877672466262,6.28527404665428,9.06858721281426,9.56552812715537,5.16254326188832,2.03991400112325,9.17495425784289,7.14754059192436,6.2723764193627,7.72444310724635,7.49893419343454,8.83272415649754,8.12681021373782,12.5350643601246,7.69958864485907,0,0,8.44315059943735,5.06719730950197,4.04419556011827,5.48082622651488,2.33044095282455,4.45326417194474,8.50078101154066,7.61163695780353,5.5347719341454,8.28974523039424,3.88042733547826,4.90099706185734,4.44950941921873,6.36237170447611,8.84610551949874,5.82360659810673,5.74187947997023,5.81850303762267,3.72783522436244,6.73395833126558,9.00620839297857,4.59822699375465,5.27186547826049,5.99902730993408,9.53026703047985,9.73639156131348,8.6925114535539,8.79580464790051,7.12679712788333,9.71718737855256,8.10373373782284,7.94982189032012,5.90668310331835,7.58882520721567,9.60346482047964,4.8401626853889,7.54698569183682,7.81667155073808,10.0834792690996,8.28876498096433,5.98721192531685,7.55870949680614,8.71426038405478,6.98499100995342,4.95806383745537,5.10586416453112,6.862093842394,6.79506770525482,7.50727572909114,4.179025998266,7.81972118350185,6.56813080501028,18.2575428701441,8.74982884190032,4.83077948972507,6.21377317606506,6.56672967947069,5.76198596675248,4.26140524053378,6.68998387941173,6.63348585415727,8.37122201101468,5.633741429392,3.38619492864792,5.10135534731789,7.05920095540109,6.16122952548504,7.74859933354261,6.14740322814942,7.78397228810156,7.14985825118033,7.82075054082562,6.60837565967596,3.96675849995316,5.54549451391608,4.87697010906921,4.38149368495117,5.04208811558356,5.33707305227689,8.17970192284004,5.69434873853414,2.9645811850322,8.79673230800943,5.57078121715222,4.874102177978,2.69645822596266,3.24207074812041,3.78368419183298,6.63837653335786,6.85491075658373,4.50830942692322,5.09128319613286,4.26695471768777,3.08597607517402,5.05892296994058,3.54264355151045,6.59394656933774,6.91024117962083,7.11486305009157,6.17326891149548,4.91397487783007,6.74586337154561,6.49152388443209,5.06472035480075,6.62027214631691,3.74004978686054,3.24270453550071,2.74561413188081,2.87536413054709,5.20997326735905,4.99260276983297,5.30415643688935,2.69096120282868,4.3419916922703,7.20537441649758,6.06372517665551,5.70377417547091,7.46878377410828,8.68353918667458,5.69521275302174,5.2369600994923,4.29294025287157,5.51723004371669,4.65075848262427,4.30527875375215,5.73521601505083,5.35323443784276,7.23245292907558,9.04747703635634,6.52686820582452,6.88469982226651,4.69092468718045,8.83028244932856,7.2671245687166,7.86887737808042,9.3414243065618,6.94118082715765,8.58965237452605,9.47862950024315,6.93009514062401,7.12955757063661,6.22768367735431,8.50102473517278,10.5212108848072,7.90575555893047,6.74774764485795,6.52924391958036,7.47875535402472,4.72372182125371,6.59880491890142,3.98235415019888,4.37005145078967,6.65111825322452,4.71512699389745,7.38254732201932,8.30074899448604,4.13485269069154,3.63533729477506,4.27796854061666,3.79244109522979,6.32511651449993,3.09406629744561,14.6389030474129,10.6236045478473,11.9009989080134,9.00215547132688,11.8817956540323,14.6262430433698,15.9612549984057,21.6170113871366,3.75474732901937,5.2958017715955,5.29268155331909,5.11147384118588,3.06782410722221,4.1012788951146,5.96861720015682,4.26766339337159,3.49777003955821,7.78786268444141,7.00570611271196,5.98521917093345,5.74103034846106,6.40452753815949,7.38148829693536,7.54967971581525,4.75939603982795,6.01791244991729,4.00779924032829,4.77335309007557,3.63786392618306,5.89626454667861,4.21220829205025,5.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|phase1_expression=13.1322054625931,2.09385244583617,2.27499619694768,2.41971369045464,3.00537437967808,2.51818907867835,4.20502753071946,6.32704284863724,5.77233760821834,6.31974221069382,4.96532107853964,3.98860794976682,6.50562773738582,10.2281870830227,6.66219523631325,9.11138703254217,11.1929900500503,9.14840279538889,6.7186072466812,8.48779303596061,11.8210173309987,18.5674078745655,17.5003858723087,4.63978026100879,6.42345986988076,1.72269589234506,4.30761996159075,4.30942465371778,2.85035129184561,2.52030129759931,3.54768817048488,19.6859508772486,19.6820732027062,0,4.33277429626912,5.98444723290572,5.9209113316087,6.69650609179052,9.37602413428561,5.23523743973798,12.9410927366823,6.83045484958446,7.2826552954673,6.79842817068117,6.18399280439039,6.60768307782054,26.6013057078333,30.3054967368821,17.7945808014922,16.9154012194627,17.0783434382942,18.6878333674463,13.5903910906766,5.80289713609076,7.05796978199174,8.2323019531503,13.1805382371828,10.8291139378263,9.91350658212029,13.7537654610729,8.87363964908651,9.4876468979357,16.0073063300005,15.2982951937838,10.8775299882367,11.3676818391376,24.2676089519908,43.4166685013357,8.08778976006126,12.5555522648472,10.9368979902719,10.5690864229407,13.0312439161452,11.1466627285608,10.6388472830242,17.4651569455904,9.91042928994498,6.51205424234457,8.60196586234964,10.0233578674947,11.8933936683133,8.33461392890816,9.49222196604695,8.4414391504752,9.62628960993904,7.07108605136802,7.68807076315156,7.82877672466262,6.28527404665428,9.06858721281426,9.56552812715537,5.16254326188832,2.03991400112325,9.17495425784289,7.14754059192436,6.2723764193627,7.72444310724635,7.49893419343454,8.83272415649754,8.12681021373782,12.5350643601246,7.69958864485907,0,0,8.44315059943735,5.06719730950197,4.04419556011827,5.48082622651488,2.33044095282455,4.45326417194474,8.50078101154066,7.61163695780353,5.5347719341454,8.28974523039424,3.88042733547826,4.90099706185734,4.44950941921873,6.36237170447611,8.84610551949874,5.82360659810673,5.74187947997023,5.81850303762267,3.72783522436244,6.73395833126558,9.00620839297857,4.59822699375465,5.27186547826049,5.99902730993408,9.53026703047985,9.73639156131348,8.6925114535539,8.79580464790051,7.12679712788333,9.71718737855256,8.10373373782284,7.94982189032012,5.90668310331835,7.58882520721567,9.60346482047964,4.8401626853889,7.54698569183682,7.81667155073808,10.0834792690996,8.28876498096433,5.98721192531685,7.55870949680614,8.71426038405478,6.98499100995342,4.95806383745537,5.10586416453112,6.862093842394,6.79506770525482,7.50727572909114,4.179025998266,7.81972118350185,6.56813080501028,18.2575428701441,8.74982884190032,4.83077948972507,6.21377317606506,6.56672967947069,5.76198596675248,4.26140524053378,6.68998387941173,6.63348585415727,8.37122201101468,5.633741429392,3.38619492864792,5.10135534731789,7.05920095540109,6.16122952548504,7.74859933354261,6.14740322814942,7.78397228810156,7.14985825118033,7.82075054082562,6.60837565967596,3.96675849995316,5.54549451391608,4.87697010906921,4.38149368495117,5.04208811558356,5.33707305227689,8.17970192284004,5.69434873853414,2.9645811850322,8.79673230800943,5.57078121715222,4.874102177978,2.69645822596266,3.24207074812041,3.78368419183298,6.63837653335786,6.85491075658373,4.50830942692322,5.09128319613286,4.26695471768777,3.08597607517402,5.05892296994058,3.54264355151045,6.59394656933774,6.91024117962083,7.11486305009157,6.17326891149548,4.91397487783007,6.74586337154561,6.49152388443209,5.06472035480075,6.62027214631691,3.74004978686054,3.24270453550071,2.74561413188081,2.87536413054709,5.20997326735905,4.99260276983297,5.30415643688935,2.69096120282868,4.3419916922703,7.20537441649758,6.06372517665551,5.70377417547091,7.46878377410828,8.68353918667458,5.69521275302174,5.2369600994923,4.29294025287157,5.51723004371669,4.65075848262427,4.30527875375215,5.73521601505083,5.35323443784276,7.23245292907558,9.04747703635634,6.52686820582452,6.88469982226651,4.69092468718045,8.83028244932856,7.2671245687166,7.86887737808042,9.3414243065618,6.94118082715765,8.58965237452605,9.47862950024315,6.93009514062401,7.12955757063661,6.22768367735431,8.50102473517278,10.5212108848072,7.90575555893047,6.74774764485795,6.52924391958036,7.47875535402472,4.72372182125371,6.59880491890142,3.98235415019888,4.37005145078967,6.65111825322452,4.71512699389745,7.38254732201932,8.30074899448604,4.13485269069154,3.63533729477506,4.27796854061666,3.79244109522979,6.32511651449993,3.09406629744561,14.6389030474129,10.6236045478473,11.9009989080134,9.00215547132688,11.8817956540323,14.6262430433698,15.9612549984057,21.6170113871366,3.75474732901937,5.2958017715955,5.29268155331909,5.11147384118588,3.06782410722221,4.1012788951146,5.96861720015682,4.26766339337159,3.49777003955821,7.78786268444141,7.00570611271196,5.98521917093345,5.74103034846106,6.40452753815949,7.38148829693536,7.54967971581525,4.75939603982795,6.01791244991729,4.00779924032829,4.77335309007557,3.63786392618306,5.89626454667861,4.21220829205025,5.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| ||
|short_description=p1@Pard6a | |short_description=p1@Pard6a | ||
}} | }} |
Latest revision as of 07:38, 27 September 2015
Short description: | p1@Pard6a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Pard6a_5end |
Coexpression cluster: | MCL_coexpression_mm9:346 |
Association with transcript: | 0bp_to_ENSMUST00000098444, NM_001047436, uc009ndu.1_5end |
EntrezGene: | Pard6a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 3.73e-14 | 44 |
neurectodermal cell | 3.73e-14 | 44 |
neural cell | 1.22e-13 | 43 |
somatic stem cell | 6.99e-12 | 91 |
multi fate stem cell | 6.99e-12 | 91 |
stem cell | 9.72e-11 | 97 |
electrically responsive cell | 2.24e-09 | 39 |
electrically active cell | 2.24e-09 | 39 |
neuron | 6.44e-09 | 33 |
neuronal stem cell | 6.44e-09 | 33 |
neuroblast | 6.44e-09 | 33 |
electrically signaling cell | 6.44e-09 | 33 |
CNS neuron (sensu Vertebrata) | 8.05e-08 | 23 |
neuroblast (sensu Vertebrata) | 8.05e-08 | 23 |
motile cell | 3.56e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.62e-24 | 75 |
central nervous system | 1.74e-24 | 73 |
ectoderm-derived structure | 3.67e-19 | 95 |
ectoderm | 3.67e-19 | 95 |
presumptive ectoderm | 3.67e-19 | 95 |
neurectoderm | 5.38e-19 | 64 |
neural plate | 5.38e-19 | 64 |
presumptive neural plate | 5.38e-19 | 64 |
regional part of nervous system | 5.75e-19 | 54 |
neural tube | 1.05e-18 | 52 |
neural rod | 1.05e-18 | 52 |
future spinal cord | 1.05e-18 | 52 |
neural keel | 1.05e-18 | 52 |
regional part of brain | 1.46e-17 | 46 |
brain | 2.39e-17 | 47 |
future brain | 2.39e-17 | 47 |
anterior neural tube | 6.15e-16 | 40 |
ecto-epithelium | 8.34e-16 | 73 |
regional part of forebrain | 1.52e-15 | 39 |
forebrain | 1.52e-15 | 39 |
future forebrain | 1.52e-15 | 39 |
pre-chordal neural plate | 1.74e-15 | 49 |
structure with developmental contribution from neural crest | 3.72e-15 | 92 |
gray matter | 3.19e-12 | 34 |
brain grey matter | 2.74e-11 | 29 |
regional part of telencephalon | 2.74e-11 | 29 |
telencephalon | 2.74e-11 | 29 |
cerebral cortex | 5.21e-09 | 21 |
cerebral hemisphere | 5.21e-09 | 21 |
pallium | 5.21e-09 | 21 |
regional part of cerebral cortex | 3.80e-08 | 17 |