FFCP PHASE1:Mm9::chr5:112657653..112657700,-: Difference between revisions
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{{FFCP|EntrezGene=330166|HGNC=|UniProt=|association_with_transcript=267bp_to_ENSMUST00000146058,NR_003718,NR_033657,uc008ysk.2,uc008ysl.2,uc008ysm.2,uc008ysn.2,uc008yso.2,uc008ysp.2,uc008ysq.2,uc008ysr.2,uc008yss.2,uc012ebf.1_5end|description=CAGE_peak_1_at_Miat_5end|id=chr5:112657653..112657700,-|ontology_enrichment_celltype=CL:0000540!3.20e-18!33;CL:0000047!3.20e-18!33;CL:0000031!3.20e-18!33;CL:0000404!3.20e-18!33;CL:0000221!1.37e-14!44;CL:0000133!1.37e-14!44;CL:0002319!3.25e-14!43;CL:0000393!1.93e-12!39;CL:0000211!1.93e-12!39;CL:0000117!9.40e-12!23;CL:0000337!9.40e-12!23;CL:0000055!1.82e-09!50;CL:0000107!2.84e-07!9|ontology_enrichment_celltype_v019_2=CL:0000540,1.35e-20,33;CL:0000047,1.35e-20,33;CL:0000031,1.35e-20,33;CL:0000404,1.35e-20,33;CL:0000221,2.01e-15,44;CL:0000133,2.01e-15,44;CL:0002319,5.36e-15,43;CL:0000393,7.00e-15,39;CL:0000211,7.00e-15,39;CL:0000117,3.33e-13,23;CL:0000337,3.33e-13,23;CL:0000107,4.33e-08,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.10e-29!102;UBERON:0000924!1.10e-29!102;UBERON:0006601!1.10e-29!102;UBERON:0001017!6.83e-29!73;UBERON:0005743!6.83e-29!73;UBERON:0000073!1.36e-28!75;UBERON:0001016!1.36e-28!75;UBERON:0002346!5.96e-25!71;UBERON:0003075!5.96e-25!71;UBERON:0007284!5.96e-25!71;UBERON:0000033!2.42e-22!63;UBERON:0003056!1.45e-20!49;UBERON:0001049!1.59e-19!52;UBERON:0005068!1.59e-19!52;UBERON:0006241!1.59e-19!52;UBERON:0007135!1.59e-19!52;UBERON:0000955!4.06e-18!50;UBERON:0006238!4.06e-18!50;UBERON:0002616!6.30e-18!49;UBERON:0003080!3.26e-16!40;UBERON:0002020!1.05e-15!34;UBERON:0002780!1.09e-15!39;UBERON:0001890!1.09e-15!39;UBERON:0006240!1.09e-15!39;UBERON:0002791!2.35e-13!29;UBERON:0003528!2.35e-13!29;UBERON:0001893!2.35e-13!29;UBERON:0000153!4.75e-11!94;UBERON:0007811!2.20e-10!86;UBERON:0000956!6.97e-10!21;UBERON:0001869!6.97e-10!21;UBERON:0000203!6.97e-10!21;UBERON:0002619!4.71e-08!17;UBERON:0002021!5.65e-08!10;UBERON:0000411!5.65e-08!10;UBERON:0001950!5.65e-08!10;UBERON:0002410!2.84e-07!9;UBERON:0000468!7.77e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.85e-33,95;UBERON:0000924,3.85e-33,95;UBERON:0006601,3.85e-33,95;UBERON:0001017,1.40e-31,73;UBERON:0001016,1.29e-30,75;UBERON:0002346,5.34e-29,64;UBERON:0003075,5.34e-29,64;UBERON:0007284,5.34e-29,64;UBERON:0010371,2.30e-28,73;UBERON:0003056,8.96e-24,49;UBERON:0000073,2.30e-22,54;UBERON:0001049,2.44e-21,52;UBERON:0005068,2.44e-21,52;UBERON:0006241,2.44e-21,52;UBERON:0007135,2.44e-21,52;UBERON:0003080,8.82e-19,40;UBERON:0000955,3.07e-18,47;UBERON:0006238,3.07e-18,47;UBERON:0002020,3.17e-18,34;UBERON:0002780,3.52e-18,39;UBERON:0001890,3.52e-18,39;UBERON:0006240,3.52e-18,39;UBERON:0002616,5.04e-18,46;UBERON:0010314,1.20e-16,92;UBERON:0003528,1.56e-15,29;UBERON:0002791,1.56e-15,29;UBERON:0001893,1.56e-15,29;UBERON:0000956,1.47e-11,21;UBERON:0001869,1.47e-11,21;UBERON:0000203,1.47e-11,21;UBERON:0002619,1.84e-09,17;UBERON:0002021,6.86e-09,10;UBERON:0000411,6.86e-09,10;UBERON:0001950,6.86e-09,10;UBERON:0002410,4.33e-08,9|phase1_expression=39.8770629290937,0,0,0,0,1.6787927191189,2.10251376535973,0.129123323441576,0,0,0,0,0,0,0,0,0,0,0,0,12.246233781754,0,0,0.159992422793407,0.22940928106717,0,0.430761996159075,0,0,0,0.221730510655305,0,0,0,0,0.166234645358492,0.204169356262369,0,0,0,0,0,0,0,0.101376931219515,0,0.782391344348039,9.15705656797875,0,0,0.839918529752175,0,0,0,0,0,0,0,63.9320016316329,61.8919445748278,60.8478147365932,0,0,0.449949858640699,0,0,4.79360176829448,5.76327457982332,44.3791540680284,39.1517221161903,31.3384192413559,37.1346279724945,31.8050698970323,42.626798126804,53.5776182991941,68.0221902091416,45.1475112097494,24.7713435885264,25.4986845205364,67.7895518933196,41.6268778390964,43.7567231267678,21.7762739221077,39.9561453122493,35.1435969886663,49.2029737741025,40.7183007085434,45.295065335548,0.832988126665025,1.5870027622425,0,0,0,0,0.649776417447669,0,0.561777680527007,0,0,0,22.1124169049388,0,0,0,0.216491041011214,0,0,0.79928715803342,0,0.148442139064825,7.28638372417771,6.08930956624282,1.38369298353635,4.97384713823654,5.29149182110672,0,0,0.144599356919912,0,3.72063754879041,3.3126227769059,1.45462575940567,0,0.878342391034642,1.46612694769419,0,0,0,0,46.7346794943047,21.5025283324754,38.7015404507622,74.7444576826789,88.221832778964,27.4280218818619,51.5927216555469,2.03678727700633,1.11966273549084,0,1.26265113531884,31.2289063110489,94.4897649221574,70.4042927538916,89.5186617944147,128.725056394312,127.985606564565,146.268392037737,7.24369438069244,1.72454394346274,12.2918952109083,14.0760899331159,7.01426343768239,7.78532297831674,6.61679116392116,7.61393904709391,0.796137067273973,0,0,0,0,0.469052119962192,0,0.23674473558521,0,0.154267112887378,0,0.536546802799238,0,0.329119699826961,0,0.243206428637567,0,0,0,92.527577368216,40.9560357269552,0.660837565967596,0.528901133327089,5.54549451391608,11.3795969211615,13.4022159774977,10.0841762311671,5.33707305227689,5.32631753115166,0.949058123089023,2.14108641141214,2.5133520880027,2.18852119245266,1.16978452271472,0,0.432276099749388,0,0.379335801906163,1.5994791765362,0,0.610953983535943,0.387904974335251,0.49095073923223,0.126473074248515,0.147610147979602,0,0.123397163921801,0,0.166845105716094,0.589676985339609,0.224862112384854,0,0,0,0.287696137450811,0,0,0,0,0,0.252578877947112,0,0,0.184753190166605,1.51593129416388,2.11854469374634,0.678980343100753,0.469380496577004,0.167506257441816,0,0.585400943573396,0,0.221464689648775,0,0,0.172684981865896,0.289298117163023,0,0,0,0,32.1101179975584,36.8044695899518,0,1.26235463602186,93.0749247277957,99.1714410513462,157.474503742676,61.892918669711,90.456261677452,124.270597016297,98.7738112086742,151.973046113882,195.667450083529,12.2102100240287,0.141940085208269,1.78065603667255,2.60619134965722,0.164970122972535,0,6.06951590387454,6.34879469625977,2.82907619633847,2.65771703592696,4.30409207121498,2.84271122485043,1.09060118843252,1.42598951353889,0.632073515871632,0,0,17.702859499197,34.3916689599803,28.8469864835543,10.0738406464848,4.78818630834139,9.27517851530767,10.3665882979336,5.78483403317739,0.469343416127421,0,0.441056796109924,3.62749756471256,3.06782410722221,3.07595917133595,3.10368094408155,3.11867709515616,0.582961673259701,36.3433591940599,0,0.82554747185289,0,0,0,0,0.339956859987711,0.139951452323658,0.138199973804424,0,8.69923982348122,11.3858901591035,7.34436317588249,6.06356058441959,5.02233896616208,1.07891477107857,1.07449492442937,0,0.388844919875379,0,0,0,0,0,0.129159823477731,0,0.117357238645754,0.13020438484395,0,0,0.288030006257865,0,0.810900861160657,0.308132871494482,0.129920822977795,0.179026695667481,0.198681354781265,0.240390899039938,0.295379054349154,0,0,0,0,0.288635524920988,0,0.680191150845634,0,0,0,0.579568782096571,0.93841237725591,0,0.428736758158132,0,108.432353782477,98.969925849043,109.423043066925,100.877818035745,119.889440959862,120.107629684962,97.8782625336118,104.474519148019,103.316469248399,110.800706714889,15.4643147900423,87.3864472748258,49.5127456686989,17.0174701947806,11.1094976192831,10.6629234901008,14.0015438515018,14.6284890639615,16.6877988987744,11.3713745293709,17.2365923925363,18.8626341386076,13.3907355681932,14.0855335290712,12.9804159839686,14.7651044297753,14.8331937209415,14.6611007552416,13.5988347265091,19.5774563778748,11.6575545811041,12.7782580434723,13.1139904471027,12.7904846636449,18.0690010397435,14.63832716526,15.0000937755674,18.1518100892112,14.3952360676613,15.7119836064167,16.6089025373844,12.7070782264477,21.2800142448238,13.479505183179,13.3105561576988,22.2331414364772,14.0358965067245,15.4707158914775,10.5208582637864,5.51478547798789,4.86922454802885|short_description=p1@Miat}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=330166 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=267bp_to_ENSMUST00000146058,NR_003718,NR_033657,uc008ysk.2,uc008ysl.2,uc008ysm.2,uc008ysn.2,uc008yso.2,uc008ysp.2,uc008ysq.2,uc008ysr.2,uc008yss.2,uc012ebf.1_5end | |||
|cluster_id=chr5:112657653..112657700,- | |||
|description=CAGE_peak_1_at_Miat_5end | |||
|id=chr5:112657653..112657700,- | |||
|ontology_enrichment_celltype=CL:0000540!3.20e-18!33;CL:0000047!3.20e-18!33;CL:0000031!3.20e-18!33;CL:0000404!3.20e-18!33;CL:0000221!1.37e-14!44;CL:0000133!1.37e-14!44;CL:0002319!3.25e-14!43;CL:0000393!1.93e-12!39;CL:0000211!1.93e-12!39;CL:0000117!9.40e-12!23;CL:0000337!9.40e-12!23;CL:0000055!1.82e-09!50;CL:0000107!2.84e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.35e-20,33;CL:0000047,1.35e-20,33;CL:0000031,1.35e-20,33;CL:0000404,1.35e-20,33;CL:0000221,2.01e-15,44;CL:0000133,2.01e-15,44;CL:0002319,5.36e-15,43;CL:0000393,7.00e-15,39;CL:0000211,7.00e-15,39;CL:0000117,3.33e-13,23;CL:0000337,3.33e-13,23;CL:0000107,4.33e-08,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.10e-29!102;UBERON:0000924!1.10e-29!102;UBERON:0006601!1.10e-29!102;UBERON:0001017!6.83e-29!73;UBERON:0005743!6.83e-29!73;UBERON:0000073!1.36e-28!75;UBERON:0001016!1.36e-28!75;UBERON:0002346!5.96e-25!71;UBERON:0003075!5.96e-25!71;UBERON:0007284!5.96e-25!71;UBERON:0000033!2.42e-22!63;UBERON:0003056!1.45e-20!49;UBERON:0001049!1.59e-19!52;UBERON:0005068!1.59e-19!52;UBERON:0006241!1.59e-19!52;UBERON:0007135!1.59e-19!52;UBERON:0000955!4.06e-18!50;UBERON:0006238!4.06e-18!50;UBERON:0002616!6.30e-18!49;UBERON:0003080!3.26e-16!40;UBERON:0002020!1.05e-15!34;UBERON:0002780!1.09e-15!39;UBERON:0001890!1.09e-15!39;UBERON:0006240!1.09e-15!39;UBERON:0002791!2.35e-13!29;UBERON:0003528!2.35e-13!29;UBERON:0001893!2.35e-13!29;UBERON:0000153!4.75e-11!94;UBERON:0007811!2.20e-10!86;UBERON:0000956!6.97e-10!21;UBERON:0001869!6.97e-10!21;UBERON:0000203!6.97e-10!21;UBERON:0002619!4.71e-08!17;UBERON:0002021!5.65e-08!10;UBERON:0000411!5.65e-08!10;UBERON:0001950!5.65e-08!10;UBERON:0002410!2.84e-07!9;UBERON:0000468!7.77e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.85e-33,95;UBERON:0000924,3.85e-33,95;UBERON:0006601,3.85e-33,95;UBERON:0001017,1.40e-31,73;UBERON:0001016,1.29e-30,75;UBERON:0002346,5.34e-29,64;UBERON:0003075,5.34e-29,64;UBERON:0007284,5.34e-29,64;UBERON:0010371,2.30e-28,73;UBERON:0003056,8.96e-24,49;UBERON:0000073,2.30e-22,54;UBERON:0001049,2.44e-21,52;UBERON:0005068,2.44e-21,52;UBERON:0006241,2.44e-21,52;UBERON:0007135,2.44e-21,52;UBERON:0003080,8.82e-19,40;UBERON:0000955,3.07e-18,47;UBERON:0006238,3.07e-18,47;UBERON:0002020,3.17e-18,34;UBERON:0002780,3.52e-18,39;UBERON:0001890,3.52e-18,39;UBERON:0006240,3.52e-18,39;UBERON:0002616,5.04e-18,46;UBERON:0010314,1.20e-16,92;UBERON:0003528,1.56e-15,29;UBERON:0002791,1.56e-15,29;UBERON:0001893,1.56e-15,29;UBERON:0000956,1.47e-11,21;UBERON:0001869,1.47e-11,21;UBERON:0000203,1.47e-11,21;UBERON:0002619,1.84e-09,17;UBERON:0002021,6.86e-09,10;UBERON:0000411,6.86e-09,10;UBERON:0001950,6.86e-09,10;UBERON:0002410,4.33e-08,9 | |||
|phase1_expression=39.8770629290937,0,0,0,0,1.6787927191189,2.10251376535973,0.129123323441576,0,0,0,0,0,0,0,0,0,0,0,0,12.246233781754,0,0,0.159992422793407,0.22940928106717,0,0.430761996159075,0,0,0,0.221730510655305,0,0,0,0,0.166234645358492,0.204169356262369,0,0,0,0,0,0,0,0.101376931219515,0,0.782391344348039,9.15705656797875,0,0,0.839918529752175,0,0,0,0,0,0,0,63.9320016316329,61.8919445748278,60.8478147365932,0,0,0.449949858640699,0,0,4.79360176829448,5.76327457982332,44.3791540680284,39.1517221161903,31.3384192413559,37.1346279724945,31.8050698970323,42.626798126804,53.5776182991941,68.0221902091416,45.1475112097494,24.7713435885264,25.4986845205364,67.7895518933196,41.6268778390964,43.7567231267678,21.7762739221077,39.9561453122493,35.1435969886663,49.2029737741025,40.7183007085434,45.295065335548,0.832988126665025,1.5870027622425,0,0,0,0,0.649776417447669,0,0.561777680527007,0,0,0,22.1124169049388,0,0,0,0.216491041011214,0,0,0.79928715803342,0,0.148442139064825,7.28638372417771,6.08930956624282,1.38369298353635,4.97384713823654,5.29149182110672,0,0,0.144599356919912,0,3.72063754879041,3.3126227769059,1.45462575940567,0,0.878342391034642,1.46612694769419,0,0,0,0,46.7346794943047,21.5025283324754,38.7015404507622,74.7444576826789,88.221832778964,27.4280218818619,51.5927216555469,2.03678727700633,1.11966273549084,0,1.26265113531884,31.2289063110489,94.4897649221574,70.4042927538916,89.5186617944147,128.725056394312,127.985606564565,146.268392037737,7.24369438069244,1.72454394346274,12.2918952109083,14.0760899331159,7.01426343768239,7.78532297831674,6.61679116392116,7.61393904709391,0.796137067273973,0,0,0,0,0.469052119962192,0,0.23674473558521,0,0.154267112887378,0,0.536546802799238,0,0.329119699826961,0,0.243206428637567,0,0,0,92.527577368216,40.9560357269552,0.660837565967596,0.528901133327089,5.54549451391608,11.3795969211615,13.4022159774977,10.0841762311671,5.33707305227689,5.32631753115166,0.949058123089023,2.14108641141214,2.5133520880027,2.18852119245266,1.16978452271472,0,0.432276099749388,0,0.379335801906163,1.5994791765362,0,0.610953983535943,0.387904974335251,0.49095073923223,0.126473074248515,0.147610147979602,0,0.123397163921801,0,0.166845105716094,0.589676985339609,0.224862112384854,0,0,0,0.287696137450811,0,0,0,0,0,0.252578877947112,0,0,0.184753190166605,1.51593129416388,2.11854469374634,0.678980343100753,0.469380496577004,0.167506257441816,0,0.585400943573396,0,0.221464689648775,0,0,0.172684981865896,0.289298117163023,0,0,0,0,32.1101179975584,36.8044695899518,0,1.26235463602186,93.0749247277957,99.1714410513462,157.474503742676,61.892918669711,90.456261677452,124.270597016297,98.7738112086742,151.973046113882,195.667450083529,12.2102100240287,0.141940085208269,1.78065603667255,2.60619134965722,0.164970122972535,0,6.06951590387454,6.34879469625977,2.82907619633847,2.65771703592696,4.30409207121498,2.84271122485043,1.09060118843252,1.42598951353889,0.632073515871632,0,0,17.702859499197,34.3916689599803,28.8469864835543,10.0738406464848,4.78818630834139,9.27517851530767,10.3665882979336,5.78483403317739,0.469343416127421,0,0.441056796109924,3.62749756471256,3.06782410722221,3.07595917133595,3.10368094408155,3.11867709515616,0.582961673259701,36.3433591940599,0,0.82554747185289,0,0,0,0,0.339956859987711,0.139951452323658,0.138199973804424,0,8.69923982348122,11.3858901591035,7.34436317588249,6.06356058441959,5.02233896616208,1.07891477107857,1.07449492442937,0,0.388844919875379,0,0,0,0,0,0.129159823477731,0,0.117357238645754,0.13020438484395,0,0,0.288030006257865,0,0.810900861160657,0.308132871494482,0.129920822977795,0.179026695667481,0.198681354781265,0.240390899039938,0.295379054349154,0,0,0,0,0.288635524920988,0,0.680191150845634,0,0,0,0.579568782096571,0.93841237725591,0,0.428736758158132,0,108.432353782477,98.969925849043,109.423043066925,100.877818035745,119.889440959862,120.107629684962,97.8782625336118,104.474519148019,103.316469248399,110.800706714889,15.4643147900423,87.3864472748258,49.5127456686989,17.0174701947806,11.1094976192831,10.6629234901008,14.0015438515018,14.6284890639615,16.6877988987744,11.3713745293709,17.2365923925363,18.8626341386076,13.3907355681932,14.0855335290712,12.9804159839686,14.7651044297753,14.8331937209415,14.6611007552416,13.5988347265091,19.5774563778748,11.6575545811041,12.7782580434723,13.1139904471027,12.7904846636449,18.0690010397435,14.63832716526,15.0000937755674,18.1518100892112,14.3952360676613,15.7119836064167,16.6089025373844,12.7070782264477,21.2800142448238,13.479505183179,13.3105561576988,22.2331414364772,14.0358965067245,15.4707158914775,10.5208582637864,5.51478547798789,4.86922454802885 | |||
|short_description=p1@Miat | |||
}} |
Latest revision as of 15:32, 1 October 2015
Short description: | p1@Miat |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Miat_5end |
Coexpression cluster: | NA |
Association with transcript: | 267bp_to_ENSMUST00000146058, NR_003718, NR_033657, uc008ysk.2, uc008ysl.2, uc008ysm.2, uc008ysn.2, uc008yso.2, uc008ysp.2, uc008ysq.2, uc008ysr.2, uc008yss.2, uc012ebf.1_5end |
EntrezGene: | Miat |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.35e-20 | 33 |
neuronal stem cell | 1.35e-20 | 33 |
neuroblast | 1.35e-20 | 33 |
electrically signaling cell | 1.35e-20 | 33 |
ectodermal cell | 2.01e-15 | 44 |
neurectodermal cell | 2.01e-15 | 44 |
neural cell | 5.36e-15 | 43 |
electrically responsive cell | 7.00e-15 | 39 |
electrically active cell | 7.00e-15 | 39 |
CNS neuron (sensu Vertebrata) | 3.33e-13 | 23 |
neuroblast (sensu Vertebrata) | 3.33e-13 | 23 |
autonomic neuron | 4.33e-08 | 9 |