FFCP PHASE1:Mm9::chr3:135354384..135354443,-: Difference between revisions
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{{FFCP|EntrezGene=18033|HGNC=|MCL_coexpression_id=7|UniProt=P25799|association_with_transcript=66bp_to_ENSMUST00000029812_5end|description=CAGE_peak_1_at_Nfkb1_5end|id=chr3:135354384..135354443,-|ontology_enrichment_celltype=CL:0000063!2.75e-14!66;CL:0000988!6.93e-09!32;CL:0002032!6.93e-09!32;CL:0000037!6.93e-09!32;CL:0000566!6.93e-09!32;CL:0000837!6.93e-09!32;CL:0000738!8.33e-09!17;CL:0002087!8.33e-09!17;CL:0000838!1.70e-08!12;CL:0000084!6.70e-08!11;CL:0000827!6.70e-08!11;CL:0000542!9.45e-08!13;CL:0000051!9.45e-08!13;CL:0002320!9.57e-08!46;CL:0000134!9.57e-08!46;CL:0000791!3.27e-07!9;CL:0000789!3.27e-07!9;CL:0002420!3.27e-07!9;CL:0002419!3.27e-07!9;CL:0000790!3.27e-07!9;CL:0002076!4.04e-07!15;CL:0000219!9.36e-07!54;CL:0000066!9.43e-07!25|ontology_enrichment_celltype_v019_2=CL:0000988,5.57e-09,32;CL:0002032,5.57e-09,32;CL:0000037,5.57e-09,32;CL:0000837,5.57e-09,32;CL:0000738,8.32e-09,17;CL:0002087,8.32e-09,17;CL:0000838,1.69e-08,12;CL:0000084,6.69e-08,11;CL:0000827,6.69e-08,11;CL:0002320,8.06e-08,46;CL:0000134,8.06e-08,46;CL:0000542,9.43e-08,13;CL:0000051,9.43e-08,13;CL:0000791,3.26e-07,9;CL:0000789,3.26e-07,9;CL:0002420,3.26e-07,9;CL:0002419,3.26e-07,9;CL:0000790,3.26e-07,9;CL:0002076,4.04e-07,15;CL:0000219,8.08e-07,54;CL:0002031,9.08e-07,25;CL:0000066,9.42e-07,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!8.53e-18!48;UBERON:0002390!4.83e-16!45;UBERON:0003061!4.83e-16!45;UBERON:0003081!5.17e-13!88;UBERON:0000072!2.01e-11!27;UBERON:0001004!4.55e-11!42;UBERON:0004177!4.70e-11!29;UBERON:0000065!7.03e-11!41;UBERON:0001007!7.17e-11!128;UBERON:0001555!7.17e-11!128;UBERON:0007026!7.17e-11!128;UBERON:0004119!9.39e-11!130;UBERON:0000925!9.39e-11!130;UBERON:0006595!9.39e-11!130;UBERON:0003408!1.64e-10!24;UBERON:0002370!2.25e-10!23;UBERON:0000974!2.25e-10!23;UBERON:0004807!2.25e-10!23;UBERON:0005058!2.25e-10!23;UBERON:0003351!2.25e-10!23;UBERON:0009113!2.25e-10!23;UBERON:0003295!2.25e-10!23;UBERON:0009722!2.25e-10!23;UBERON:0005562!2.25e-10!23;UBERON:0007690!2.25e-10!23;UBERON:0004921!5.05e-10!126;UBERON:0004185!5.05e-10!126;UBERON:0006562!5.26e-10!24;UBERON:0001557!5.26e-10!24;UBERON:0001042!5.26e-10!24;UBERON:0008814!5.26e-10!24;UBERON:0009145!5.26e-10!24;UBERON:0002405!6.81e-10!70;UBERON:0000063!3.28e-08!35;UBERON:0002384!9.57e-08!46;UBERON:0000490!1.05e-07!66;UBERON:0002204!3.07e-07!32;UBERON:0005911!7.82e-07!69|ontology_enrichment_uberon_v019_2=UBERON:0002193,8.49e-18,48;UBERON:0002405,8.49e-18,48;UBERON:0002390,4.81e-16,45;UBERON:0003061,4.81e-16,45;UBERON:0003081,1.56e-12,87;UBERON:0001007,3.03e-12,116;UBERON:0001555,3.03e-12,116;UBERON:0007026,3.03e-12,116;UBERON:0004119,4.30e-12,118;UBERON:0000925,4.30e-12,118;UBERON:0006595,4.30e-12,118;UBERON:0000072,2.01e-11,27;UBERON:0004921,2.46e-11,114;UBERON:0000077,3.47e-11,35;UBERON:0001004,4.54e-11,42;UBERON:0004177,4.68e-11,29;UBERON:0005057,4.68e-11,29;UBERON:0000065,7.02e-11,41;UBERON:0003408,1.64e-10,24;UBERON:0002370,2.25e-10,23;UBERON:0000974,2.25e-10,23;UBERON:0004807,2.25e-10,23;UBERON:0005058,2.25e-10,23;UBERON:0003351,2.25e-10,23;UBERON:0009113,2.25e-10,23;UBERON:0003295,2.25e-10,23;UBERON:0009722,2.25e-10,23;UBERON:0005562,2.25e-10,23;UBERON:0007690,2.25e-10,23;UBERON:0006562,5.25e-10,24;UBERON:0001557,5.25e-10,24;UBERON:0001042,5.25e-10,24;UBERON:0008814,5.25e-10,24;UBERON:0009145,5.25e-10,24;UBERON:0000926,4.40e-09,120;UBERON:0004120,4.40e-09,120;UBERON:0006603,4.40e-09,120;UBERON:0002384,8.06e-08,46;UBERON:0000490,1.05e-07,66;UBERON:0002204,3.07e-07,32;UBERON:0005911,7.81e-07,69|phase1_expression=4.00372117761985,88.6397535403977,102.829828102035,20.8700305801713,10.5188103288733,56.7431939062187,36.6771845734975,68.564484747477,1321.16136867124,1090.50662813417,388.664787871896,463.476243762905,35.780952555622,38.7272382716158,7.32841475994458,5.4668322195253,3.49780939064073,30.9152922051073,27.0115434203305,37.7706790100247,4.33720779770456,15.8865521921416,14.3659884026414,32.1584769814747,40.1466241867548,55.700500519157,62.8912514392249,52.5749807753569,7.22088993934221,8.82105454159758,31.264002002398,0,0,0,8.66554859253824,4.98703936075477,8.37094360675713,7.53356935326434,13.2827008569046,10.470474879476,11.1763982725893,12.9778642142105,11.1667381197165,7.1761186246079,10.8473316404881,5.87349606917381,14.0830441982647,2.61630187656536,3.95435128922049,1.55543919259427,4.75953833526233,2.87505128729943,48.6569557567435,71.0854899171118,47.053131879945,22.6388303711633,17.4785398362642,19.0798674142654,1.61853168687678,1.05798195854407,0.633831403506179,4.40497891689872,3.55717918444456,29.6966906702862,22.7439263390404,29.1296847127901,10.1864037576258,6.14749288514487,1.45165457231869,0.945041568321835,1.26194976810829,1.42825492201902,2.20868540951614,0.489963196859816,0.670918297127655,1.83843757322004,5.50579404996943,1.78762273319263,1.22885226604995,1.18697658957174,0.914876436024097,0.52091337055676,1.67509799400829,1.68828783009504,1.68078072554491,0.883885756421003,2.27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58511,4.24677982494508,3.27504251823572,4.08255002691767,5.16478496585877,4.63241980150983,5.79669589051054|short_description=p1@Nfkb1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18033 | |||
|HGNC= | |||
|MCL_coexpression_id=7 | |||
|TSSclassifier=NA | |||
|UniProt=P25799 | |||
|association_with_transcript=66bp_to_ENSMUST00000029812_5end | |||
|cluster_id=chr3:135354384..135354443,- | |||
|description=CAGE_peak_1_at_Nfkb1_5end | |||
|id=chr3:135354384..135354443,- | |||
|ontology_enrichment_celltype=CL:0000063!2.75e-14!66;CL:0000988!6.93e-09!32;CL:0002032!6.93e-09!32;CL:0000037!6.93e-09!32;CL:0000566!6.93e-09!32;CL:0000837!6.93e-09!32;CL:0000738!8.33e-09!17;CL:0002087!8.33e-09!17;CL:0000838!1.70e-08!12;CL:0000084!6.70e-08!11;CL:0000827!6.70e-08!11;CL:0000542!9.45e-08!13;CL:0000051!9.45e-08!13;CL:0002320!9.57e-08!46;CL:0000134!9.57e-08!46;CL:0000791!3.27e-07!9;CL:0000789!3.27e-07!9;CL:0002420!3.27e-07!9;CL:0002419!3.27e-07!9;CL:0000790!3.27e-07!9;CL:0002076!4.04e-07!15;CL:0000219!9.36e-07!54;CL:0000066!9.43e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,5.57e-09,32;CL:0002032,5.57e-09,32;CL:0000037,5.57e-09,32;CL:0000837,5.57e-09,32;CL:0000738,8.32e-09,17;CL:0002087,8.32e-09,17;CL:0000838,1.69e-08,12;CL:0000084,6.69e-08,11;CL:0000827,6.69e-08,11;CL:0002320,8.06e-08,46;CL:0000134,8.06e-08,46;CL:0000542,9.43e-08,13;CL:0000051,9.43e-08,13;CL:0000791,3.26e-07,9;CL:0000789,3.26e-07,9;CL:0002420,3.26e-07,9;CL:0002419,3.26e-07,9;CL:0000790,3.26e-07,9;CL:0002076,4.04e-07,15;CL:0000219,8.08e-07,54;CL:0002031,9.08e-07,25;CL:0000066,9.42e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!8.53e-18!48;UBERON:0002390!4.83e-16!45;UBERON:0003061!4.83e-16!45;UBERON:0003081!5.17e-13!88;UBERON:0000072!2.01e-11!27;UBERON:0001004!4.55e-11!42;UBERON:0004177!4.70e-11!29;UBERON:0000065!7.03e-11!41;UBERON:0001007!7.17e-11!128;UBERON:0001555!7.17e-11!128;UBERON:0007026!7.17e-11!128;UBERON:0004119!9.39e-11!130;UBERON:0000925!9.39e-11!130;UBERON:0006595!9.39e-11!130;UBERON:0003408!1.64e-10!24;UBERON:0002370!2.25e-10!23;UBERON:0000974!2.25e-10!23;UBERON:0004807!2.25e-10!23;UBERON:0005058!2.25e-10!23;UBERON:0003351!2.25e-10!23;UBERON:0009113!2.25e-10!23;UBERON:0003295!2.25e-10!23;UBERON:0009722!2.25e-10!23;UBERON:0005562!2.25e-10!23;UBERON:0007690!2.25e-10!23;UBERON:0004921!5.05e-10!126;UBERON:0004185!5.05e-10!126;UBERON:0006562!5.26e-10!24;UBERON:0001557!5.26e-10!24;UBERON:0001042!5.26e-10!24;UBERON:0008814!5.26e-10!24;UBERON:0009145!5.26e-10!24;UBERON:0002405!6.81e-10!70;UBERON:0000063!3.28e-08!35;UBERON:0002384!9.57e-08!46;UBERON:0000490!1.05e-07!66;UBERON:0002204!3.07e-07!32;UBERON:0005911!7.82e-07!69 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,8.49e-18,48;UBERON:0002405,8.49e-18,48;UBERON:0002390,4.81e-16,45;UBERON:0003061,4.81e-16,45;UBERON:0003081,1.56e-12,87;UBERON:0001007,3.03e-12,116;UBERON:0001555,3.03e-12,116;UBERON:0007026,3.03e-12,116;UBERON:0004119,4.30e-12,118;UBERON:0000925,4.30e-12,118;UBERON:0006595,4.30e-12,118;UBERON:0000072,2.01e-11,27;UBERON:0004921,2.46e-11,114;UBERON:0000077,3.47e-11,35;UBERON:0001004,4.54e-11,42;UBERON:0004177,4.68e-11,29;UBERON:0005057,4.68e-11,29;UBERON:0000065,7.02e-11,41;UBERON:0003408,1.64e-10,24;UBERON:0002370,2.25e-10,23;UBERON:0000974,2.25e-10,23;UBERON:0004807,2.25e-10,23;UBERON:0005058,2.25e-10,23;UBERON:0003351,2.25e-10,23;UBERON:0009113,2.25e-10,23;UBERON:0003295,2.25e-10,23;UBERON:0009722,2.25e-10,23;UBERON:0005562,2.25e-10,23;UBERON:0007690,2.25e-10,23;UBERON:0006562,5.25e-10,24;UBERON:0001557,5.25e-10,24;UBERON:0001042,5.25e-10,24;UBERON:0008814,5.25e-10,24;UBERON:0009145,5.25e-10,24;UBERON:0000926,4.40e-09,120;UBERON:0004120,4.40e-09,120;UBERON:0006603,4.40e-09,120;UBERON:0002384,8.06e-08,46;UBERON:0000490,1.05e-07,66;UBERON:0002204,3.07e-07,32;UBERON:0005911,7.81e-07,69 | |||
|phase1_expression=4.00372117761985,88.6397535403977,102.829828102035,20.8700305801713,10.5188103288733,56.7431939062187,36.6771845734975,68.564484747477,1321.16136867124,1090.50662813417,388.664787871896,463.476243762905,35.780952555622,38.7272382716158,7.32841475994458,5.4668322195253,3.49780939064073,30.9152922051073,27.0115434203305,37.7706790100247,4.33720779770456,15.8865521921416,14.3659884026414,32.1584769814747,40.1466241867548,55.700500519157,62.8912514392249,52.5749807753569,7.22088993934221,8.82105454159758,31.264002002398,0,0,0,8.66554859253824,4.98703936075477,8.37094360675713,7.53356935326434,13.2827008569046,10.470474879476,11.1763982725893,12.9778642142105,11.1667381197165,7.1761186246079,10.8473316404881,5.87349606917381,14.0830441982647,2.61630187656536,3.95435128922049,1.55543919259427,4.75953833526233,2.87505128729943,48.6569557567435,71.0854899171118,47.053131879945,22.6388303711633,17.4785398362642,19.0798674142654,1.61853168687678,1.05798195854407,0.633831403506179,4.40497891689872,3.55717918444456,29.6966906702862,22.7439263390404,29.1296847127901,10.1864037576258,6.14749288514487,1.45165457231869,0.945041568321835,1.26194976810829,1.42825492201902,2.20868540951614,0.489963196859816,0.670918297127655,1.83843757322004,5.50579404996943,1.78762273319263,1.22885226604995,1.18697658957174,0.914876436024097,0.52091337055676,1.67509799400829,1.68828783009504,1.68078072554491,0.883885756421003,2.27794689278565,0.931997229126503,17.265572079966,5.13886608726142,17.971598299504,6.0229671388697,14.2793980078628,2.15881276655127,3.24888208723835,4.03224198387602,5.33688796500657,3.74946709671727,2.33807404142582,2.47337702157238,2.95771181531029,11.5493829672886,30.5766287647975,35.5533351576666,21.8655951421326,22.5490280272838,19.2099289105618,9.02052649780574,34.9566142923682,9.64873903921361,5.03107447621794,4.87144765299426,6.45723392316964,2.86373017049983,4.23319345688537,6.28332956648377,2.71914464507811,5.78397427679647,6.19227386364912,6.47067399789637,11.4837589599405,5.33362778448744,7.45567044872489,1.17112318804619,1.67557365450764,9.96282515313506,82.9120661580968,26.9956228947033,40.2812619821615,2.39665023047716,1.37250180845588,0.628271760564322,2.08589184230732,1.79000820131231,0.62336413367868,1.78465389374533,3.56437773476107,9.57933673697716,1.76905930903572,4.41927897361595,1.69156575851515,1.83921683546778,2.88099407688559,2.10986744970001,2.24520447199382,1.92170580427275,2.52994656311268,2.32833033665114,1.72454394346274,1.32374256117473,1.40760899331159,1.97276159184817,5.56094498451196,5.57203466435466,4.52720700097476,3.38358253591438,17.5553296828309,10.5512641917033,16.1973194655488,4.34964122324554,2.81431271977315,4.50155153652537,4.26140524053378,5.90292695242211,4.31947916084659,5.58081467400979,4.02410102099429,5.48797109125697,7.73431294593358,4.76085645829376,7.53939928776458,6.87139940899062,6.14740322814942,6.84452735677896,1.47202963994889,1.13195073617213,19.1642894130603,11.9002754998595,3.83918850963421,3.94802342162745,5.02583099156164,3.63030344322017,2.89091456998331,4.1849637744763,11.8632265386128,5.76446341534038,6.03204501120647,5.37182474511107,6.04388670069272,8.08937467788799,7.78096979548899,12.3467589417708,1.51734320762465,3.31320686568214,1.1270773567308,2.64746726198909,3.68509725618489,3.57692681440625,5.75452487830741,3.83786384746966,5.02395929092399,2.59134044235781,2.96452627087149,2.16898637430922,2.75182593158484,1.57403478669398,1.62288097110802,2.17059443777175,3.8193877767213,2.30156909960649,2.10775794807546,3.29473695825698,7.18841032636773,4.83783231969054,3.74445207737473,4.2938409251009,3.94674309748207,2.8946611281802,14.4107488329952,2.65287976478679,2.93336957595647,3.22515662972857,3.28566347603903,5.69521275302174,6.66522194480839,9.75668239288994,8.6699329258405,8.63712289630222,9.56728611944923,9.83179888294428,12.6060036762104,10.9933284521949,19.6028669121054,27.7391898747542,5.4094070032094,6.07060841870411,3.21101179975584,2.10981035865966,4.26230857979356,3.53459298086122,4.73262329124385,5.46614242015294,5.38558494331997,5.25731355495614,4.90157082981267,8.77537245445381,6.07216052512342,4.09158201075837,5.92931666919785,0.963963949265421,6.10342366395555,2.67098405500883,3.25773918707152,8.57844639457184,5.30980553359851,3.64170954232472,3.02323556964751,1.88605079755898,3.2483208216885,2.76691633149535,6.71913562237375,7.27067458955011,4.9909632973861,4.74055136903724,4.21674434299995,4.12542172992747,3.06395645178409,1.8006109403131,2.19909762430683,2.7863814554107,2.6601035046341,3.38900753443934,1.48094118541909,3.65357938937519,5.86679270159276,3.38931313382112,5.29268155331909,12.696241476494,7.91175690809937,5.97097956788743,6.2073618881631,5.0883678920969,9.32738677215522,2.03967832211561,17.428829841381,8.04908785056568,5.92622487583077,4.70921142511728,11.2089266731241,10.5237959675,163.689228084083,125.676404186645,136.403374144966,6.68269432610579,2.05618395827738,3.04979200690273,4.9682456778028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| |||
|short_description=p1@Nfkb1 | |||
}} |
Latest revision as of 16:07, 1 October 2015
Short description: | p1@Nfkb1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nfkb1_5end |
Coexpression cluster: | MCL_coexpression_mm9:7 |
Association with transcript: | 66bp_to_ENSMUST00000029812_5end |
EntrezGene: | Nfkb1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 5.57e-09 | 32 |
hematopoietic oligopotent progenitor cell | 5.57e-09 | 32 |
hematopoietic stem cell | 5.57e-09 | 32 |
hematopoietic multipotent progenitor cell | 5.57e-09 | 32 |
leukocyte | 8.32e-09 | 17 |
nongranular leukocyte | 8.32e-09 | 17 |
lymphoid lineage restricted progenitor cell | 1.69e-08 | 12 |
T cell | 6.69e-08 | 11 |
pro-T cell | 6.69e-08 | 11 |
connective tissue cell | 8.06e-08 | 46 |
mesenchymal cell | 8.06e-08 | 46 |
lymphocyte | 9.43e-08 | 13 |
common lymphoid progenitor | 9.43e-08 | 13 |
mature alpha-beta T cell | 3.26e-07 | 9 |
alpha-beta T cell | 3.26e-07 | 9 |
immature T cell | 3.26e-07 | 9 |
mature T cell | 3.26e-07 | 9 |
immature alpha-beta T cell | 3.26e-07 | 9 |
endo-epithelial cell | 4.04e-07 | 15 |
motile cell | 8.08e-07 | 54 |
hematopoietic lineage restricted progenitor cell | 9.08e-07 | 25 |
epithelial cell | 9.42e-07 | 25 |