FFCP PHASE1:Mm9::chr6:71582645..71582688,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=104263 | |EntrezGene=104263 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=669 | |||
|TSSclassifier=NA | |||
|UniProt=Q6PCM1 | |UniProt=Q6PCM1 | ||
|association_with_transcript=0bp_to_ENSMUST00000167220,NM_173001,uc009cgy.2_5end | |association_with_transcript=0bp_to_ENSMUST00000167220,NM_173001,uc009cgy.2_5end | ||
|cluster_id=chr6:71582645..71582688,- | |||
|description=CAGE_peak_2_at_Kdm3a_5end | |description=CAGE_peak_2_at_Kdm3a_5end | ||
|id=chr6:71582645..71582688,- | |id=chr6:71582645..71582688,- | ||
|ontology_enrichment_celltype=CL:0000838!6.26e-08!12;CL:0000988!8.28e-08!32;CL:0002032!8.28e-08!32;CL:0000037!8.28e-08!32;CL:0000566!8.28e-08!32;CL:0000837!8.28e-08!32;CL:0000084!2.88e-07!11;CL:0000827!2.88e-07!11;CL:0000542!3.44e-07!13;CL:0000051!3.44e-07!13;CL:0000791!6.29e-07!9;CL:0000789!6.29e-07!9;CL:0002420!6.29e-07!9;CL:0002419!6.29e-07!9;CL:0000790!6.29e-07!9 | |ontology_enrichment_celltype=CL:0000838!6.26e-08!12;CL:0000988!8.28e-08!32;CL:0002032!8.28e-08!32;CL:0000037!8.28e-08!32;CL:0000566!8.28e-08!32;CL:0000837!8.28e-08!32;CL:0000084!2.88e-07!11;CL:0000827!2.88e-07!11;CL:0000542!3.44e-07!13;CL:0000051!3.44e-07!13;CL:0000791!6.29e-07!9;CL:0000789!6.29e-07!9;CL:0002420!6.29e-07!9;CL:0002419!6.29e-07!9;CL:0000790!6.29e-07!9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.63e-09,32;CL:0002032,2.63e-09,32;CL:0000037,2.63e-09,32;CL:0000837,2.63e-09,32;CL:0000838,1.57e-08,12;CL:0000084,8.29e-08,11;CL:0000827,8.29e-08,11;CL:0002031,1.24e-07,25;CL:0000791,1.95e-07,9;CL:0000789,1.95e-07,9;CL:0002420,1.95e-07,9;CL:0002419,1.95e-07,9;CL:0000790,1.95e-07,9;CL:0000542,2.33e-07,13;CL:0000051,2.33e-07,13 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.01e-08!48;UBERON:0002390!8.32e-08!45;UBERON:0003061!8.32e-08!45;UBERON:0002405!2.11e-07!70;UBERON:0002370!3.68e-07!23;UBERON:0000974!3.68e-07!23;UBERON:0004807!3.68e-07!23;UBERON:0005058!3.68e-07!23;UBERON:0003351!3.68e-07!23;UBERON:0009113!3.68e-07!23;UBERON:0003295!3.68e-07!23;UBERON:0009722!3.68e-07!23;UBERON:0005562!3.68e-07!23;UBERON:0007690!3.68e-07!23;UBERON:0004177!4.40e-07!29 | |ontology_enrichment_uberon=UBERON:0002193!1.01e-08!48;UBERON:0002390!8.32e-08!45;UBERON:0003061!8.32e-08!45;UBERON:0002405!2.11e-07!70;UBERON:0002370!3.68e-07!23;UBERON:0000974!3.68e-07!23;UBERON:0004807!3.68e-07!23;UBERON:0005058!3.68e-07!23;UBERON:0003351!3.68e-07!23;UBERON:0009113!3.68e-07!23;UBERON:0003295!3.68e-07!23;UBERON:0009722!3.68e-07!23;UBERON:0005562!3.68e-07!23;UBERON:0007690!3.68e-07!23;UBERON:0004177!4.40e-07!29 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,4.25e-10,48;UBERON:0002405,4.25e-10,48;UBERON:0002390,4.52e-09,45;UBERON:0003061,4.52e-09,45;UBERON:0000926,8.22e-09,120;UBERON:0004120,8.22e-09,120;UBERON:0006603,8.22e-09,120;UBERON:0004177,3.41e-08,29;UBERON:0005057,3.41e-08,29;UBERON:0002370,4.64e-08,23;UBERON:0000974,4.64e-08,23;UBERON:0004807,4.64e-08,23;UBERON:0005058,4.64e-08,23;UBERON:0003351,4.64e-08,23;UBERON:0009113,4.64e-08,23;UBERON:0003295,4.64e-08,23;UBERON:0009722,4.64e-08,23;UBERON:0005562,4.64e-08,23;UBERON:0007690,4.64e-08,23;UBERON:0006562,2.54e-07,24;UBERON:0003408,2.54e-07,24;UBERON:0001557,2.54e-07,24;UBERON:0001042,2.54e-07,24;UBERON:0008814,2.54e-07,24;UBERON:0009145,2.54e-07,24;UBERON:0000065,6.06e-07,41 | |||
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| ||
|short_description=p2@Kdm3a | |short_description=p2@Kdm3a | ||
}} | }} |
Latest revision as of 16:54, 1 October 2015
Short description: | p2@Kdm3a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Kdm3a_5end |
Coexpression cluster: | MCL_coexpression_mm9:669 |
Association with transcript: | 0bp_to_ENSMUST00000167220, NM_173001, uc009cgy.2_5end |
EntrezGene: | Kdm3a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.63e-09 | 32 |
hematopoietic oligopotent progenitor cell | 2.63e-09 | 32 |
hematopoietic stem cell | 2.63e-09 | 32 |
hematopoietic multipotent progenitor cell | 2.63e-09 | 32 |
lymphoid lineage restricted progenitor cell | 1.57e-08 | 12 |
T cell | 8.29e-08 | 11 |
pro-T cell | 8.29e-08 | 11 |
hematopoietic lineage restricted progenitor cell | 1.24e-07 | 25 |
mature alpha-beta T cell | 1.95e-07 | 9 |
alpha-beta T cell | 1.95e-07 | 9 |
immature T cell | 1.95e-07 | 9 |
mature T cell | 1.95e-07 | 9 |
immature alpha-beta T cell | 1.95e-07 | 9 |
lymphocyte | 2.33e-07 | 13 |
common lymphoid progenitor | 2.33e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 4.25e-10 | 48 |
immune system | 4.25e-10 | 48 |
hematopoietic system | 4.52e-09 | 45 |
blood island | 4.52e-09 | 45 |
mesoderm | 8.22e-09 | 120 |
mesoderm-derived structure | 8.22e-09 | 120 |
presumptive mesoderm | 8.22e-09 | 120 |
hemopoietic organ | 3.41e-08 | 29 |
immune organ | 3.41e-08 | 29 |
thymus | 4.64e-08 | 23 |
neck | 4.64e-08 | 23 |
respiratory system epithelium | 4.64e-08 | 23 |
hemolymphoid system gland | 4.64e-08 | 23 |
pharyngeal epithelium | 4.64e-08 | 23 |
thymic region | 4.64e-08 | 23 |
pharyngeal gland | 4.64e-08 | 23 |
entire pharyngeal arch endoderm | 4.64e-08 | 23 |
thymus primordium | 4.64e-08 | 23 |
early pharyngeal endoderm | 4.64e-08 | 23 |
pharynx | 2.54e-07 | 24 |
gland of gut | 2.54e-07 | 24 |
upper respiratory tract | 2.54e-07 | 24 |
chordate pharynx | 2.54e-07 | 24 |
pharyngeal arch system | 2.54e-07 | 24 |
pharyngeal region of foregut | 2.54e-07 | 24 |
respiratory tract | 6.06e-07 | 41 |