FFCP PHASE1:Mm9::chr16:20535548..20535619,+: Difference between revisions
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{{FFCP|EntrezGene=11773|HGNC=|UniProt=P84091,Q3TWV4,Q5FWI9|association_with_transcript=0bp_to_ENSMUST00000007216,ENSMUST00000090023,NM_009679,uc007ypy.1_5end|description=CAGE_peak_1_at_Ap2m1_5end|id=chr16:20535548..20535619,+|ontology_enrichment_celltype=CL:0000117!3.11e-15!23;CL:0000337!3.11e-15!23;CL:0000221!1.38e-13!44;CL:0000133!1.38e-13!44;CL:0002319!1.87e-13!43;CL:0002321!1.86e-12!70;CL:0000220!1.86e-12!70;CL:0000055!2.21e-12!50;CL:0000540!6.61e-10!33;CL:0000047!6.61e-10!33;CL:0000031!6.61e-10!33;CL:0000404!6.61e-10!33;CL:0000393!8.43e-09!39;CL:0000211!8.43e-09!39;CL:0002371!3.63e-08!118;CL:0000144!8.82e-08!121;CL:0000012!8.82e-08!121;CL:0000548!1.78e-07!115;CL:0000004!1.78e-07!115;CL:0000255!1.78e-07!115|ontology_enrichment_celltype_v019_2=CL:0000117,3.11e-15,23;CL:0000337,3.11e-15,23;CL:0000221,1.38e-13,44;CL:0000133,1.38e-13,44;CL:0002319,1.87e-13,43;CL:0002321,1.86e-12,70;CL:0000540,6.61e-10,33;CL:0000047,6.61e-10,33;CL:0000031,6.61e-10,33;CL:0000404,6.61e-10,33;CL:0000393,8.43e-09,39;CL:0000211,8.43e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.98e-21!75;UBERON:0001016!2.98e-21!75;UBERON:0001017!7.26e-20!73;UBERON:0005743!7.26e-20!73;UBERON:0002020!1.31e-18!34;UBERON:0001049!6.51e-18!52;UBERON:0005068!6.51e-18!52;UBERON:0006241!6.51e-18!52;UBERON:0007135!6.51e-18!52;UBERON:0000955!1.43e-16!50;UBERON:0006238!1.43e-16!50;UBERON:0002616!2.24e-16!49;UBERON:0004121!1.37e-15!102;UBERON:0000924!1.37e-15!102;UBERON:0006601!1.37e-15!102;UBERON:0002791!2.20e-15!29;UBERON:0003528!2.20e-15!29;UBERON:0001893!2.20e-15!29;UBERON:0002346!1.02e-14!71;UBERON:0003075!1.02e-14!71;UBERON:0007284!1.02e-14!71;UBERON:0003080!2.79e-14!40;UBERON:0002780!6.46e-14!39;UBERON:0001890!6.46e-14!39;UBERON:0006240!6.46e-14!39;UBERON:0000033!1.88e-13!63;UBERON:0003056!2.80e-12!49;UBERON:0000956!5.17e-11!21;UBERON:0001869!5.17e-11!21;UBERON:0000203!5.17e-11!21;UBERON:0000025!6.70e-10!114;UBERON:0002619!5.10e-09!17;UBERON:0004111!6.46e-08!122|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.98e-21,75;UBERON:0001017,7.26e-20,73;UBERON:0000073,1.52e-19,54;UBERON:0002020,1.31e-18,34;UBERON:0001049,6.51e-18,52;UBERON:0005068,6.51e-18,52;UBERON:0006241,6.51e-18,52;UBERON:0007135,6.51e-18,52;UBERON:0003528,2.20e-15,29;UBERON:0002791,2.20e-15,29;UBERON:0001893,2.20e-15,29;UBERON:0004121,2.71e-15,95;UBERON:0000924,2.71e-15,95;UBERON:0006601,2.71e-15,95;UBERON:0002346,9.89e-15,64;UBERON:0003075,9.89e-15,64;UBERON:0007284,9.89e-15,64;UBERON:0000955,1.02e-14,47;UBERON:0006238,1.02e-14,47;UBERON:0002616,1.59e-14,46;UBERON:0003080,2.79e-14,40;UBERON:0002780,6.46e-14,39;UBERON:0001890,6.46e-14,39;UBERON:0006240,6.46e-14,39;UBERON:0010314,3.58e-13,92;UBERON:0003056,2.80e-12,49;UBERON:0010371,1.09e-11,73;UBERON:0000956,5.17e-11,21;UBERON:0001869,5.17e-11,21;UBERON:0000203,5.17e-11,21;UBERON:0000025,6.70e-10,114;UBERON:0002619,5.10e-09,17;UBERON:0011216,4.09e-08,194;UBERON:0004111,6.46e-08,122|phase1_expression=18.8975639583657,28.6159834264276,26.8449551239826,30.246421130683,27.5492651470491,15.9485308316295,13.0823078733494,8.26389270026088,10.4183654392233,10.0647746318457,11.4716038711088,9.97151987441705,8.9024379564227,9.00430144915673,11.9919514253639,12.5534665781692,24.4846657344851,8.99067171270977,7.67840828192137,5.51706547337439,22.1112554392781,11.1205865344992,10.7091913546964,27.518696720466,21.1056538581796,31.5827580263261,24.5534337810673,26.2874903876785,32.3039813075836,27.2192540140725,16.8515188098032,10.1604907753541,7.38077745101484,15.8481681015439,16.1756907060714,13.9637102101134,13.0668388007916,29.7157457823205,19.533383613095,23.0350447348471,20.5881020810855,15.0270006690858,28.1596004758069,9.31636453019272,9.12392380975631,12.114085642671,10.9534788208725,30.741547049643,36.0285339684534,36.1639612278167,28.97718927645,37.3756667348926,9.73139115134871,13.7818806982155,12.4354705682712,32.4146889405293,26.9341433542431,26.2992767061496,38.6424440241832,44.4352422588508,48.1711866664696,31.5125414824293,57.8041617472241,40.495487277663,28.6771245144423,34.1030455174128,26.664409836138,29.2005912044381,44.5865332926454,39.5567399311854,31.3384192413559,55.9875929431455,50.1371587960163,34.542405378617,52.1399362339206,58.8300023430413,35.2370819198044,66.9081651566384,59.4457283701662,44.3137926773451,79.4112746468916,54.174990537903,54.7198678042707,46.7092966326294,54.3961762085444,50.0868595305235,44.5623360901192,41.3806769732167,60.5052284732141,58.7946737630791,10.1452571045587,18.0689014166091,13.599426674155,25.3660500069774,14.9448576012964,16.5769948226014,12.2186645514624,25.3941180641306,35.3308966259901,35.333957451034,18.8730182500752,25.6652954828636,15.2883143823987,21.3320010945999,14.0719176657289,16.4683912558814,12.1325866803548,17.8126852361734,8.80388804400384,14.5473296283528,17.0015620230813,13.0920155674221,20.5247792557892,17.182381022999,14.8161770990988,16.8393232381765,22.494742063828,7.22996784599558,13.2691582792481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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=11773 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=P84091,Q3TWV4,Q5FWI9 | |||
|association_with_transcript=0bp_to_ENSMUST00000007216,ENSMUST00000090023,NM_009679,uc007ypy.1_5end | |||
|cluster_id=chr16:20535548..20535619,+ | |||
|description=CAGE_peak_1_at_Ap2m1_5end | |||
|id=chr16:20535548..20535619,+ | |||
|ontology_enrichment_celltype=CL:0000117!3.11e-15!23;CL:0000337!3.11e-15!23;CL:0000221!1.38e-13!44;CL:0000133!1.38e-13!44;CL:0002319!1.87e-13!43;CL:0002321!1.86e-12!70;CL:0000220!1.86e-12!70;CL:0000055!2.21e-12!50;CL:0000540!6.61e-10!33;CL:0000047!6.61e-10!33;CL:0000031!6.61e-10!33;CL:0000404!6.61e-10!33;CL:0000393!8.43e-09!39;CL:0000211!8.43e-09!39;CL:0002371!3.63e-08!118;CL:0000144!8.82e-08!121;CL:0000012!8.82e-08!121;CL:0000548!1.78e-07!115;CL:0000004!1.78e-07!115;CL:0000255!1.78e-07!115 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.11e-15,23;CL:0000337,3.11e-15,23;CL:0000221,1.38e-13,44;CL:0000133,1.38e-13,44;CL:0002319,1.87e-13,43;CL:0002321,1.86e-12,70;CL:0000540,6.61e-10,33;CL:0000047,6.61e-10,33;CL:0000031,6.61e-10,33;CL:0000404,6.61e-10,33;CL:0000393,8.43e-09,39;CL:0000211,8.43e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.98e-21!75;UBERON:0001016!2.98e-21!75;UBERON:0001017!7.26e-20!73;UBERON:0005743!7.26e-20!73;UBERON:0002020!1.31e-18!34;UBERON:0001049!6.51e-18!52;UBERON:0005068!6.51e-18!52;UBERON:0006241!6.51e-18!52;UBERON:0007135!6.51e-18!52;UBERON:0000955!1.43e-16!50;UBERON:0006238!1.43e-16!50;UBERON:0002616!2.24e-16!49;UBERON:0004121!1.37e-15!102;UBERON:0000924!1.37e-15!102;UBERON:0006601!1.37e-15!102;UBERON:0002791!2.20e-15!29;UBERON:0003528!2.20e-15!29;UBERON:0001893!2.20e-15!29;UBERON:0002346!1.02e-14!71;UBERON:0003075!1.02e-14!71;UBERON:0007284!1.02e-14!71;UBERON:0003080!2.79e-14!40;UBERON:0002780!6.46e-14!39;UBERON:0001890!6.46e-14!39;UBERON:0006240!6.46e-14!39;UBERON:0000033!1.88e-13!63;UBERON:0003056!2.80e-12!49;UBERON:0000956!5.17e-11!21;UBERON:0001869!5.17e-11!21;UBERON:0000203!5.17e-11!21;UBERON:0000025!6.70e-10!114;UBERON:0002619!5.10e-09!17;UBERON:0004111!6.46e-08!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.98e-21,75;UBERON:0001017,7.26e-20,73;UBERON:0000073,1.52e-19,54;UBERON:0002020,1.31e-18,34;UBERON:0001049,6.51e-18,52;UBERON:0005068,6.51e-18,52;UBERON:0006241,6.51e-18,52;UBERON:0007135,6.51e-18,52;UBERON:0003528,2.20e-15,29;UBERON:0002791,2.20e-15,29;UBERON:0001893,2.20e-15,29;UBERON:0004121,2.71e-15,95;UBERON:0000924,2.71e-15,95;UBERON:0006601,2.71e-15,95;UBERON:0002346,9.89e-15,64;UBERON:0003075,9.89e-15,64;UBERON:0007284,9.89e-15,64;UBERON:0000955,1.02e-14,47;UBERON:0006238,1.02e-14,47;UBERON:0002616,1.59e-14,46;UBERON:0003080,2.79e-14,40;UBERON:0002780,6.46e-14,39;UBERON:0001890,6.46e-14,39;UBERON:0006240,6.46e-14,39;UBERON:0010314,3.58e-13,92;UBERON:0003056,2.80e-12,49;UBERON:0010371,1.09e-11,73;UBERON:0000956,5.17e-11,21;UBERON:0001869,5.17e-11,21;UBERON:0000203,5.17e-11,21;UBERON:0000025,6.70e-10,114;UBERON:0002619,5.10e-09,17;UBERON:0011216,4.09e-08,194;UBERON:0004111,6.46e-08,122 | |||
|phase1_expression=18.8975639583657,28.6159834264276,26.8449551239826,30.246421130683,27.5492651470491,15.9485308316295,13.0823078733494,8.26389270026088,10.4183654392233,10.0647746318457,11.4716038711088,9.97151987441705,8.9024379564227,9.00430144915673,11.9919514253639,12.5534665781692,24.4846657344851,8.99067171270977,7.67840828192137,5.51706547337439,22.1112554392781,11.1205865344992,10.7091913546964,27.518696720466,21.1056538581796,31.5827580263261,24.5534337810673,26.2874903876785,32.3039813075836,27.2192540140725,16.8515188098032,10.1604907753541,7.38077745101484,15.8481681015439,16.1756907060714,13.9637102101134,13.0668388007916,29.7157457823205,19.533383613095,23.0350447348471,20.5881020810855,15.0270006690858,28.1596004758069,9.31636453019272,9.12392380975631,12.114085642671,10.9534788208725,30.741547049643,36.0285339684534,36.1639612278167,28.97718927645,37.3756667348926,9.73139115134871,13.7818806982155,12.4354705682712,32.4146889405293,26.9341433542431,26.2992767061496,38.6424440241832,44.4352422588508,48.1711866664696,31.5125414824293,57.8041617472241,40.495487277663,28.6771245144423,34.1030455174128,26.664409836138,29.2005912044381,44.5865332926454,39.5567399311854,31.3384192413559,55.9875929431455,50.1371587960163,34.542405378617,52.1399362339206,58.8300023430413,35.2370819198044,66.9081651566384,59.4457283701662,44.3137926773451,79.4112746468916,54.174990537903,54.7198678042707,46.7092966326294,54.3961762085444,50.0868595305235,44.5623360901192,41.3806769732167,60.5052284732141,58.7946737630791,10.1452571045587,18.0689014166091,13.599426674155,25.3660500069774,14.9448576012964,16.5769948226014,12.2186645514624,25.3941180641306,35.3308966259901,35.333957451034,18.8730182500752,25.6652954828636,15.2883143823987,21.3320010945999,14.0719176657289,16.4683912558814,12.1325866803548,17.8126852361734,8.80388804400384,14.5473296283528,17.0015620230813,13.0920155674221,20.5247792557892,17.182381022999,14.8161770990988,16.8393232381765,22.494742063828,7.22996784599558,13.2691582792481,14.235482795372,12.1462835153216,10.6672555689749,11.1835056730873,12.0040126774734,26.1808383516819,15.3274233125155,8.74650408893218,11.3981518888747,10.4197586199913,27.5614776504874,17.3850229071078,36.8167251690693,31.6360262749943,39.1244649715406,27.4280218818619,31.474805035145,16.4979769437512,13.0627319140598,8.59257378674494,7.78634866779954,14.9638509407109,16.0931473103431,13.8647839950119,15.5225962370787,14.9680298132921,15.6298738747517,22.6758173434544,12.4177617954728,11.8562396113063,9.45530400839096,10.205165201509,13.3709396780821,12.7901734643775,10.0993128291428,10.4948889568051,9.95171334092466,9.83098462238529,8.4924809347856,12.2190304740105,11.5990432619881,13.3679854189225,12.244220179349,12.0739815148457,12.9864392953287,13.2669717083145,16.509910077279,12.8771232671817,15.5297905348335,18.4307031903098,15.9242440156722,13.1331471464286,16.2281986042119,13.173006917463,13.9574675510787,26.49653351908,29.5336237528546,15.5296828002385,15.8670339998127,11.7308537794379,12.5407802804637,12.371276286921,13.1094291005173,15.7888411129858,16.9300807240178,23.2519240156811,15.9757986082291,14.0747716928151,17.5081695396213,15.2071987952914,16.178749355776,19.0201483889731,19.3167035056736,14.035424670528,13.481324487948,7.88954149711563,10.997171703647,15.1282939990748,15.4298803758701,15.4297150583188,17.4179974615931,21.6658244421097,18.0159859325829,14.5261787272703,10.67808676583,15.528160613943,15.0657615297852,19.6774317746848,13.0235666266305,16.8053062175737,12.3709339103849,17.6727397184789,23.8868429473631,15.814502718009,18.9791883310937,22.4667124642484,21.9743623813987,22.6040741037609,19.2977408545347,12.1937105509959,10.9905018826881,14.0149879740142,12.7308814331391,14.3161051455986,10.5528942188344,9.75978927632656,19.5133647857799,8.82756806994669,16.8313164133069,15.4671125597762,15.0754249538479,14.6782234586011,15.0435020924772,28.6503439484617,40.2490206025845,14.2611639175521,8.27810238914197,29.3807579677659,35.0462942910687,20.3279332267078,12.876017287423,15.4599027513966,8.58965237452605,13.5716740571663,14.0991590792006,12.0311284004493,14.1538265394416,13.3587531552715,13.151513606009,11.0680577825027,19.921921618152,8.94222536812092,17.2723635557238,13.845391545054,9.40329700943452,3.98235415019888,11.1679092631291,11.1859716076958,10.9390946258421,10.335566250827,11.3751004739253,11.8877014857382,10.1789444253702,14.2598951353889,6.63677191665214,9.48767477174989,11.3449097573006,12.2558258071364,13.324520958317,14.4881725836685,16.5039516974326,9.57637261668277,18.3719882130133,20.5686275752651,21.312546438022,14.3149741918863,14.192748747876,6.17479514553893,7.4198813823666,9.20347232166662,13.5704081088351,13.130957840345,11.9822856813895,15.4484843413821,25.0324157714188,10.7648654902647,16.0981757011314,13.1488114432495,14.8811081033706,12.8492574057764,13.7266903923914,12.5784038195453,13.9951452323658,12.2997976685937,9.54670618015114,8.69923982348122,12.4024874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| |||
|short_description=p1@Ap2m1 | |||
}} |
Latest revision as of 17:54, 1 October 2015
Short description: | p1@Ap2m1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ap2m1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000007216, ENSMUST00000090023, NM_009679, uc007ypy.1_5end |
EntrezGene: | Ap2m1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.11e-15 | 23 |
neuroblast (sensu Vertebrata) | 3.11e-15 | 23 |
ectodermal cell | 1.38e-13 | 44 |
neurectodermal cell | 1.38e-13 | 44 |
neural cell | 1.87e-13 | 43 |
embryonic cell | 1.86e-12 | 70 |
neuron | 6.61e-10 | 33 |
neuronal stem cell | 6.61e-10 | 33 |
neuroblast | 6.61e-10 | 33 |
electrically signaling cell | 6.61e-10 | 33 |
electrically responsive cell | 8.43e-09 | 39 |
electrically active cell | 8.43e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.98e-21 | 75 |
central nervous system | 7.26e-20 | 73 |
regional part of nervous system | 1.52e-19 | 54 |
gray matter | 1.31e-18 | 34 |
neural tube | 6.51e-18 | 52 |
neural rod | 6.51e-18 | 52 |
future spinal cord | 6.51e-18 | 52 |
neural keel | 6.51e-18 | 52 |
brain grey matter | 2.20e-15 | 29 |
regional part of telencephalon | 2.20e-15 | 29 |
telencephalon | 2.20e-15 | 29 |
ectoderm-derived structure | 2.71e-15 | 95 |
ectoderm | 2.71e-15 | 95 |
presumptive ectoderm | 2.71e-15 | 95 |
neurectoderm | 9.89e-15 | 64 |
neural plate | 9.89e-15 | 64 |
presumptive neural plate | 9.89e-15 | 64 |
brain | 1.02e-14 | 47 |
future brain | 1.02e-14 | 47 |
regional part of brain | 1.59e-14 | 46 |
anterior neural tube | 2.79e-14 | 40 |
regional part of forebrain | 6.46e-14 | 39 |
forebrain | 6.46e-14 | 39 |
future forebrain | 6.46e-14 | 39 |
structure with developmental contribution from neural crest | 3.58e-13 | 92 |
pre-chordal neural plate | 2.80e-12 | 49 |
ecto-epithelium | 1.09e-11 | 73 |
cerebral cortex | 5.17e-11 | 21 |
cerebral hemisphere | 5.17e-11 | 21 |
pallium | 5.17e-11 | 21 |
tube | 6.70e-10 | 114 |
regional part of cerebral cortex | 5.10e-09 | 17 |
organ system subdivision | 4.09e-08 | 194 |
anatomical conduit | 6.46e-08 | 122 |