FFCP PHASE1:Mm9::chr5:117737598..117737632,-: Difference between revisions
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{{FFCP|EntrezGene=23980|HGNC=|MCL_coexpression_id=346|UniProt=P70296|association_with_transcript=1bp_to_ENSMUST00000036951_5end|description=CAGE_peak_1_at_Pebp1_5end|id=chr5:117737598..117737632,-|ontology_enrichment_celltype=CL:0000055!1.83e-23!50;CL:0000221!6.60e-22!44;CL:0000133!6.60e-22!44;CL:0002319!3.21e-21!43;CL:0002321!2.65e-20!70;CL:0000220!2.65e-20!70;CL:0000393!1.24e-17!39;CL:0000211!1.24e-17!39;CL:0000540!1.51e-15!33;CL:0000047!1.51e-15!33;CL:0000031!1.51e-15!33;CL:0000404!1.51e-15!33;CL:0000117!1.16e-11!23;CL:0000337!1.16e-11!23;CL:0000548!8.13e-10!115;CL:0000004!8.13e-10!115;CL:0000255!8.13e-10!115;CL:0002371!2.80e-08!118;CL:0000144!2.04e-07!121;CL:0000012!2.04e-07!121;CL:0002453!9.78e-07!8|ontology_enrichment_celltype_v019_2=CL:0000221,6.60e-22,44;CL:0000133,6.60e-22,44;CL:0002319,3.21e-21,43;CL:0002321,2.65e-20,70;CL:0000393,1.24e-17,39;CL:0000211,1.24e-17,39;CL:0000540,1.51e-15,33;CL:0000047,1.51e-15,33;CL:0000031,1.51e-15,33;CL:0000404,1.51e-15,33;CL:0000117,1.16e-11,23;CL:0000337,1.16e-11,23;CL:0002453,9.78e-07,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.76e-27!75;UBERON:0001016!3.76e-27!75;UBERON:0001017!7.41e-27!73;UBERON:0005743!7.41e-27!73;UBERON:0004121!1.02e-22!102;UBERON:0000924!1.02e-22!102;UBERON:0006601!1.02e-22!102;UBERON:0002346!9.42e-20!71;UBERON:0003075!9.42e-20!71;UBERON:0007284!9.42e-20!71;UBERON:0001049!2.47e-16!52;UBERON:0005068!2.47e-16!52;UBERON:0006241!2.47e-16!52;UBERON:0007135!2.47e-16!52;UBERON:0002616!7.76e-15!49;UBERON:0000955!7.84e-15!50;UBERON:0006238!7.84e-15!50;UBERON:0002020!8.58e-14!34;UBERON:0000033!5.09e-13!63;UBERON:0003080!1.81e-11!40;UBERON:0002780!2.38e-11!39;UBERON:0001890!2.38e-11!39;UBERON:0006240!2.38e-11!39;UBERON:0002791!2.50e-11!29;UBERON:0003528!2.50e-11!29;UBERON:0001893!2.50e-11!29;UBERON:0003056!5.40e-10!49;UBERON:0000956!1.30e-08!21;UBERON:0001869!1.30e-08!21;UBERON:0000203!1.30e-08!21;UBERON:0002619!2.75e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.76e-27,75;UBERON:0001017,7.41e-27,73;UBERON:0004121,7.49e-19,95;UBERON:0000924,7.49e-19,95;UBERON:0006601,7.49e-19,95;UBERON:0010314,7.30e-18,92;UBERON:0000073,2.22e-17,54;UBERON:0001049,2.47e-16,52;UBERON:0005068,2.47e-16,52;UBERON:0006241,2.47e-16,52;UBERON:0007135,2.47e-16,52;UBERON:0002346,4.96e-16,64;UBERON:0003075,4.96e-16,64;UBERON:0007284,4.96e-16,64;UBERON:0002020,8.58e-14,34;UBERON:0002616,1.44e-13,46;UBERON:0000955,1.45e-13,47;UBERON:0006238,1.45e-13,47;UBERON:0010371,8.57e-13,73;UBERON:0003080,1.81e-11,40;UBERON:0002780,2.38e-11,39;UBERON:0001890,2.38e-11,39;UBERON:0006240,2.38e-11,39;UBERON:0003528,2.50e-11,29;UBERON:0002791,2.50e-11,29;UBERON:0001893,2.50e-11,29;UBERON:0003056,5.40e-10,49;UBERON:0000956,1.30e-08,21;UBERON:0001869,1.30e-08,21;UBERON:0000203,1.30e-08,21;UBERON:0002619,2.75e-07,17|phase1_expression=130.361161543302,45.7157784007563,49.5949170934594,38.4129548359674,37.567179745976,39.619508171206,60.2720612736456,16.6569087239633,18.4433226018683,24.1086462111653,30.6480163123654,33.5043067780413,14.8944635040149,16.8721376668665,44.3035983214831,28.1440621671858,35.6776557845355,15.6153771852328,15.9052742982657,22.4926515452956,195.684610637612,45.0780918452019,70.5239430675125,58.2372418968,54.3699996129193,60.8685881961921,58.1528694814751,48.481027354325,37.8146604718184,34.7801579068704,41.9070665138526,38.7368710810375,31.3683041668131,31.6963362030877,53.1486980342345,59.1795337476233,43.8964115964094,3.76678467663217,7.813353445238,4.18818995179039,1.76469446409304,1.36609096991689,1.94204141212461,118.091215261091,115.569701590247,142.98291993395,224.546315827887,406.616916649533,371.049962638523,396.24813431339,206.47997189741,435.570270025864,18.6238692724087,13.7818806982155,15.1242209614109,104.447331030594,83.0946975822394,104.165762640043,157.402206548767,153.40738398889,219.939497016644,218.55472318459,255.227606483897,88.1901722935771,108.775299882367,114.387298506322,381.990140910966,892.539123261971,120.487329502451,122.315380128512,151.644297134346,171.676241626686,168.522696746081,132.657535549795,122.778048374361,155.347974937094,138.74601005923,112.875606867306,117.508997941026,133.468923182956,107.955419450843,136.479303085871,158.296760433783,126.621587257128,97.9436768249353,147.01966415136,126.141309188005,114.63565918256,70.9554431531935,79.5768527924452,33.6242806893946,71.4151817894551,235.270081462882,264.45456390253,59.1296539877379,85.5731354355911,167.55019321718,54.3672729024004,69.6226492335688,86.9215353295437,233.518389989736,55.1803852881567,38.2207859559969,0,86.1634343224632,79.8083576246561,91.4999245476758,163.397131877975,10.3575153458869,165.51298505728,96.4578416819715,193.031113249898,180.341318854238,198.652440248357,139.460206662946,139.48991637594,21.2587672251562,39.6202237960558,19.4614321428972,30.0886340902181,26.0592991783264,23.2740121504907,59.6453635897991,86.9558967124295,105.142246820354,25.034791410442,41.3362179545425,74.98784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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=23980 | |||
|HGNC= | |||
|MCL_coexpression_id=346 | |||
|TSSclassifier=NA | |||
|UniProt=P70296 | |||
|association_with_transcript=1bp_to_ENSMUST00000036951_5end | |||
|cluster_id=chr5:117737598..117737632,- | |||
|description=CAGE_peak_1_at_Pebp1_5end | |||
|id=chr5:117737598..117737632,- | |||
|ontology_enrichment_celltype=CL:0000055!1.83e-23!50;CL:0000221!6.60e-22!44;CL:0000133!6.60e-22!44;CL:0002319!3.21e-21!43;CL:0002321!2.65e-20!70;CL:0000220!2.65e-20!70;CL:0000393!1.24e-17!39;CL:0000211!1.24e-17!39;CL:0000540!1.51e-15!33;CL:0000047!1.51e-15!33;CL:0000031!1.51e-15!33;CL:0000404!1.51e-15!33;CL:0000117!1.16e-11!23;CL:0000337!1.16e-11!23;CL:0000548!8.13e-10!115;CL:0000004!8.13e-10!115;CL:0000255!8.13e-10!115;CL:0002371!2.80e-08!118;CL:0000144!2.04e-07!121;CL:0000012!2.04e-07!121;CL:0002453!9.78e-07!8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,6.60e-22,44;CL:0000133,6.60e-22,44;CL:0002319,3.21e-21,43;CL:0002321,2.65e-20,70;CL:0000393,1.24e-17,39;CL:0000211,1.24e-17,39;CL:0000540,1.51e-15,33;CL:0000047,1.51e-15,33;CL:0000031,1.51e-15,33;CL:0000404,1.51e-15,33;CL:0000117,1.16e-11,23;CL:0000337,1.16e-11,23;CL:0002453,9.78e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.76e-27!75;UBERON:0001016!3.76e-27!75;UBERON:0001017!7.41e-27!73;UBERON:0005743!7.41e-27!73;UBERON:0004121!1.02e-22!102;UBERON:0000924!1.02e-22!102;UBERON:0006601!1.02e-22!102;UBERON:0002346!9.42e-20!71;UBERON:0003075!9.42e-20!71;UBERON:0007284!9.42e-20!71;UBERON:0001049!2.47e-16!52;UBERON:0005068!2.47e-16!52;UBERON:0006241!2.47e-16!52;UBERON:0007135!2.47e-16!52;UBERON:0002616!7.76e-15!49;UBERON:0000955!7.84e-15!50;UBERON:0006238!7.84e-15!50;UBERON:0002020!8.58e-14!34;UBERON:0000033!5.09e-13!63;UBERON:0003080!1.81e-11!40;UBERON:0002780!2.38e-11!39;UBERON:0001890!2.38e-11!39;UBERON:0006240!2.38e-11!39;UBERON:0002791!2.50e-11!29;UBERON:0003528!2.50e-11!29;UBERON:0001893!2.50e-11!29;UBERON:0003056!5.40e-10!49;UBERON:0000956!1.30e-08!21;UBERON:0001869!1.30e-08!21;UBERON:0000203!1.30e-08!21;UBERON:0002619!2.75e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.76e-27,75;UBERON:0001017,7.41e-27,73;UBERON:0004121,7.49e-19,95;UBERON:0000924,7.49e-19,95;UBERON:0006601,7.49e-19,95;UBERON:0010314,7.30e-18,92;UBERON:0000073,2.22e-17,54;UBERON:0001049,2.47e-16,52;UBERON:0005068,2.47e-16,52;UBERON:0006241,2.47e-16,52;UBERON:0007135,2.47e-16,52;UBERON:0002346,4.96e-16,64;UBERON:0003075,4.96e-16,64;UBERON:0007284,4.96e-16,64;UBERON:0002020,8.58e-14,34;UBERON:0002616,1.44e-13,46;UBERON:0000955,1.45e-13,47;UBERON:0006238,1.45e-13,47;UBERON:0010371,8.57e-13,73;UBERON:0003080,1.81e-11,40;UBERON:0002780,2.38e-11,39;UBERON:0001890,2.38e-11,39;UBERON:0006240,2.38e-11,39;UBERON:0003528,2.50e-11,29;UBERON:0002791,2.50e-11,29;UBERON:0001893,2.50e-11,29;UBERON:0003056,5.40e-10,49;UBERON:0000956,1.30e-08,21;UBERON:0001869,1.30e-08,21;UBERON:0000203,1.30e-08,21;UBERON:0002619,2.75e-07,17 | |||
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| |||
|short_description=p1@Pebp1 | |||
}} |
Latest revision as of 18:12, 1 October 2015
Short description: | p1@Pebp1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Pebp1_5end |
Coexpression cluster: | MCL_coexpression_mm9:346 |
Association with transcript: | 1bp_to_ENSMUST00000036951_5end |
EntrezGene: | Pebp1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 6.60e-22 | 44 |
neurectodermal cell | 6.60e-22 | 44 |
neural cell | 3.21e-21 | 43 |
embryonic cell | 2.65e-20 | 70 |
electrically responsive cell | 1.24e-17 | 39 |
electrically active cell | 1.24e-17 | 39 |
neuron | 1.51e-15 | 33 |
neuronal stem cell | 1.51e-15 | 33 |
neuroblast | 1.51e-15 | 33 |
electrically signaling cell | 1.51e-15 | 33 |
CNS neuron (sensu Vertebrata) | 1.16e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.16e-11 | 23 |
oligodendrocyte precursor cell | 9.78e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.76e-27 | 75 |
central nervous system | 7.41e-27 | 73 |
ectoderm-derived structure | 7.49e-19 | 95 |
ectoderm | 7.49e-19 | 95 |
presumptive ectoderm | 7.49e-19 | 95 |
structure with developmental contribution from neural crest | 7.30e-18 | 92 |
regional part of nervous system | 2.22e-17 | 54 |
neural tube | 2.47e-16 | 52 |
neural rod | 2.47e-16 | 52 |
future spinal cord | 2.47e-16 | 52 |
neural keel | 2.47e-16 | 52 |
neurectoderm | 4.96e-16 | 64 |
neural plate | 4.96e-16 | 64 |
presumptive neural plate | 4.96e-16 | 64 |
gray matter | 8.58e-14 | 34 |
regional part of brain | 1.44e-13 | 46 |
brain | 1.45e-13 | 47 |
future brain | 1.45e-13 | 47 |
ecto-epithelium | 8.57e-13 | 73 |
anterior neural tube | 1.81e-11 | 40 |
regional part of forebrain | 2.38e-11 | 39 |
forebrain | 2.38e-11 | 39 |
future forebrain | 2.38e-11 | 39 |
brain grey matter | 2.50e-11 | 29 |
regional part of telencephalon | 2.50e-11 | 29 |
telencephalon | 2.50e-11 | 29 |
pre-chordal neural plate | 5.40e-10 | 49 |
cerebral cortex | 1.30e-08 | 21 |
cerebral hemisphere | 1.30e-08 | 21 |
pallium | 1.30e-08 | 21 |
regional part of cerebral cortex | 2.75e-07 | 17 |