FFCP PHASE1:Mm9::chr8:17535205..17535219,-: Difference between revisions
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{{FFCP|EntrezGene=94109|HGNC=|MCL_coexpression_id=2|UniProt=Q923L3|association_with_transcript=61bp_to_ENSMUST00000082104,ENSMUST00000131778,ENSMUST00000138348_5end|description=CAGE_peak_3_at_Csmd1_5end|id=chr8:17535205..17535219,-|ontology_enrichment_celltype=CL:0000221!2.03e-14!44;CL:0000133!2.03e-14!44;CL:0002319!6.75e-14!43;CL:0000055!1.21e-12!50;CL:0000540!1.86e-12!33;CL:0000047!1.86e-12!33;CL:0000031!1.86e-12!33;CL:0000404!1.86e-12!33;CL:0000393!1.28e-11!39;CL:0000211!1.28e-11!39;CL:0000117!1.68e-10!23;CL:0000337!1.68e-10!23|ontology_enrichment_celltype_v019_2=CL:0000117,3.17e-13,23;CL:0000337,3.17e-13,23;CL:0000540,4.78e-12,33;CL:0000047,4.78e-12,33;CL:0000031,4.78e-12,33;CL:0000404,4.78e-12,33;CL:0000393,5.23e-12,39;CL:0000211,5.23e-12,39;CL:0000221,3.99e-10,44;CL:0000133,3.99e-10,44;CL:0002319,2.41e-09,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.02e-28!75;UBERON:0001016!3.02e-28!75;UBERON:0001017!4.48e-27!73;UBERON:0005743!4.48e-27!73;UBERON:0004121!2.34e-21!102;UBERON:0000924!2.34e-21!102;UBERON:0006601!2.34e-21!102;UBERON:0001049!3.12e-19!52;UBERON:0005068!3.12e-19!52;UBERON:0006241!3.12e-19!52;UBERON:0007135!3.12e-19!52;UBERON:0002020!2.44e-18!34;UBERON:0000955!3.08e-18!50;UBERON:0006238!3.08e-18!50;UBERON:0002616!1.57e-17!49;UBERON:0000033!6.95e-16!63;UBERON:0002791!3.64e-15!29;UBERON:0003528!3.64e-15!29;UBERON:0001893!3.64e-15!29;UBERON:0003080!1.41e-13!40;UBERON:0002346!1.88e-13!71;UBERON:0003075!1.88e-13!71;UBERON:0007284!1.88e-13!71;UBERON:0002780!6.82e-13!39;UBERON:0001890!6.82e-13!39;UBERON:0006240!6.82e-13!39;UBERON:0000956!8.87e-11!21;UBERON:0001869!8.87e-11!21;UBERON:0000203!8.87e-11!21;UBERON:0003056!1.83e-10!49;UBERON:0002619!5.68e-10!17;UBERON:0002021!1.68e-09!10;UBERON:0000411!1.68e-09!10;UBERON:0001950!1.68e-09!10;UBERON:0007811!2.37e-08!86;UBERON:0000153!3.55e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.86e-33,75;UBERON:0001017,8.75e-33,73;UBERON:0000073,8.33e-30,54;UBERON:0001049,6.99e-27,52;UBERON:0005068,6.99e-27,52;UBERON:0006241,6.99e-27,52;UBERON:0007135,6.99e-27,52;UBERON:0004121,1.56e-25,95;UBERON:0000924,1.56e-25,95;UBERON:0006601,1.56e-25,95;UBERON:0002020,5.87e-24,34;UBERON:0002346,1.22e-21,64;UBERON:0003075,1.22e-21,64;UBERON:0007284,1.22e-21,64;UBERON:0000955,6.87e-21,47;UBERON:0006238,6.87e-21,47;UBERON:0002616,1.35e-19,46;UBERON:0002021,1.91e-19,10;UBERON:0000411,1.91e-19,10;UBERON:0001950,1.91e-19,10;UBERON:0010371,3.47e-19,73;UBERON:0003528,1.23e-17,29;UBERON:0002791,1.23e-17,29;UBERON:0001893,1.23e-17,29;UBERON:0003080,2.49e-16,40;UBERON:0002780,4.44e-15,39;UBERON:0001890,4.44e-15,39;UBERON:0006240,4.44e-15,39;UBERON:0002619,8.51e-15,17;UBERON:0000956,1.42e-13,21;UBERON:0001869,1.42e-13,21;UBERON:0000203,1.42e-13,21;UBERON:0010314,2.09e-13,92;UBERON:0003056,3.07e-12,49;UBERON:0003076,7.46e-12,12;UBERON:0003057,7.46e-12,12;UBERON:0002240,1.49e-09,6;UBERON:0005174,1.49e-09,6;UBERON:0001137,1.49e-09,6;UBERON:0000025,3.27e-09,114;UBERON:0004111,9.23e-09,122;UBERON:0001948,3.63e-08,5;UBERON:0002315,3.63e-08,5;UBERON:0002950,1.36e-07,4;UBERON:0001891,1.36e-07,4;UBERON:0009616,1.36e-07,4;UBERON:0010286,1.36e-07,4;UBERON:0011216,4.63e-07,194|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46625541438102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377690453926732,1.11514624341466,1.28482726513177,0,0.436050312760893,0.439372365468944,0.777719596297134,0.419959264876088,0,0,0,0,0,0,0,1.41621522601718,2.64495489636016,1.26766280701236,0,0,0.449949858640699,0,0,0.898800331555214,0.384218305321555,0.414758449233911,0.135005938331691,0.210324961351382,2.85650984403804,1.10434270475807,0.244981598429908,0.191690942036473,0,5.50579404996943,3.95830748064082,3.37934373163736,0.923204014111357,1.46380229763855,0.52091337055676,1.95428099300967,5.6276261003168,3.0559649555362,3.53554302568401,1.70846016958924,1.86399445825301,0.681535739998656,1.5870027622425,0.289864488701678,0,0,0,0,0,0,0,0,0,1.12674735821344,0,0,0,0,0,0,0.11418387971906,1.29468941823586,0.148442139064825,0,0,0,0,0.117588707135705,0,0,0.144599356919912,0,0,0,0,0,1.17112318804619,1.04723353406728,0.255457055208591,0,0,0,6.89036941262184,5.49000723382352,0.502617408451458,18.7730265807659,16.1100738118108,3.94797284663164,6.97637431191358,0,0.124406970610093,0.252722758433675,0,0,0,0,0,0.204109497453984,0,0.187403449119458,0.517406741478031,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0.469052119962192,0,0,0,0,0,0,0.116765342367169,0,0.164167464079095,0.0810688095458557,0,0,0.134206418760372,9.67333763394985,1.44066457330998,0,0,0,0,0.257734922644187,0.201683524623343,0,0,0,0.164698954724011,0,0,0,0,0.216138049874694,0,0.189667900953082,0.114248512609729,0,0,0,0,0,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0.238043640886014,0.195133647857799,0.472905432318573,0.8858587585951,0.318909537314974,0.163863314715738,0.172684981865896,0,0,0,0.491764273019036,0.275936746304732,3.05046120976805,3.39913891117389,0,0,0.94652465824877,0,1.07711698866399,0.238968797952552,0.222798674082394,0.566153061577665,0.404810701674894,1.16902343164525,1.97643888973262,5.46246237917072,1.13552068166615,0,0.488660878060728,0,0,0.242780636154981,0,0,0.295301892880773,0,0,0,0.356497378384721,0,0,0,0,0,0.129358683782755,0,0.354680467284547,0,0.658196082408484,0,0,0,0,0.16488625294148,0,0.0603129249281559,0,0,0.291480836629851,2.59595422814714,0,0.206386867963223,0,0,0.136694227721025,0,0,0,0,0,0,0.609958401380546,0.108005340821801,0,0.218362563746178,0.134864346384821,0.165306911450672,0,0,0.621339313086926,0,0,0,0,0,0.168956125490778,0,0.13020438484395,0,0,0,0,0,0,0,0,0.198681354781265,0,0,0.100966449948148,0.15241361331,0.100826185136841,0,0.0962118416403295,0,0.226730383615211,0,0,0,0.19318959403219,0.187682475451182,0.183151624267265,0,0,24.2843292325339,14.7304075682297,17.1868654031819,13.0608418581203,17.8121455140367,21.9064230243013,20.925697507186,22.9663813644352,17.2194115413998,18.6393712230655,0,0,0.682934423016537,0.486213434136588,0.209613162627982,0.367687016900028,1.11123363900808,0.412070114477788,0.962757628775446,0.252697211763798,1.01391719956096,0.943131706930381,0.187283014939765,0.192075457214608,0.746661096422973,0.476293691283074,0.579421629724277,0.192909220463705,0,0.735994600671987,1.02860775715625,0.354951612318675,0.953744759789284,0.581385666529314,0.470546902076653,0.846146078916765,0.182927972872773,0.263069711437843,0.950628796921032,1.68342681497322,0.949080144993393,0.492522411877817,0.409231043169689,0.464810523557898,0.385813221962283,0.249810577937946,0.467863216890817,1.28922632428979,0.765153328275374,0.661774257358546,0|short_description=p3@Csmd1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=94109 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|TSSclassifier=NA | |||
|UniProt=Q923L3 | |||
|association_with_transcript=61bp_to_ENSMUST00000082104,ENSMUST00000131778,ENSMUST00000138348_5end | |||
|cluster_id=chr8:17535205..17535219,- | |||
|description=CAGE_peak_3_at_Csmd1_5end | |||
|id=chr8:17535205..17535219,- | |||
|ontology_enrichment_celltype=CL:0000221!2.03e-14!44;CL:0000133!2.03e-14!44;CL:0002319!6.75e-14!43;CL:0000055!1.21e-12!50;CL:0000540!1.86e-12!33;CL:0000047!1.86e-12!33;CL:0000031!1.86e-12!33;CL:0000404!1.86e-12!33;CL:0000393!1.28e-11!39;CL:0000211!1.28e-11!39;CL:0000117!1.68e-10!23;CL:0000337!1.68e-10!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.17e-13,23;CL:0000337,3.17e-13,23;CL:0000540,4.78e-12,33;CL:0000047,4.78e-12,33;CL:0000031,4.78e-12,33;CL:0000404,4.78e-12,33;CL:0000393,5.23e-12,39;CL:0000211,5.23e-12,39;CL:0000221,3.99e-10,44;CL:0000133,3.99e-10,44;CL:0002319,2.41e-09,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.02e-28!75;UBERON:0001016!3.02e-28!75;UBERON:0001017!4.48e-27!73;UBERON:0005743!4.48e-27!73;UBERON:0004121!2.34e-21!102;UBERON:0000924!2.34e-21!102;UBERON:0006601!2.34e-21!102;UBERON:0001049!3.12e-19!52;UBERON:0005068!3.12e-19!52;UBERON:0006241!3.12e-19!52;UBERON:0007135!3.12e-19!52;UBERON:0002020!2.44e-18!34;UBERON:0000955!3.08e-18!50;UBERON:0006238!3.08e-18!50;UBERON:0002616!1.57e-17!49;UBERON:0000033!6.95e-16!63;UBERON:0002791!3.64e-15!29;UBERON:0003528!3.64e-15!29;UBERON:0001893!3.64e-15!29;UBERON:0003080!1.41e-13!40;UBERON:0002346!1.88e-13!71;UBERON:0003075!1.88e-13!71;UBERON:0007284!1.88e-13!71;UBERON:0002780!6.82e-13!39;UBERON:0001890!6.82e-13!39;UBERON:0006240!6.82e-13!39;UBERON:0000956!8.87e-11!21;UBERON:0001869!8.87e-11!21;UBERON:0000203!8.87e-11!21;UBERON:0003056!1.83e-10!49;UBERON:0002619!5.68e-10!17;UBERON:0002021!1.68e-09!10;UBERON:0000411!1.68e-09!10;UBERON:0001950!1.68e-09!10;UBERON:0007811!2.37e-08!86;UBERON:0000153!3.55e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.86e-33,75;UBERON:0001017,8.75e-33,73;UBERON:0000073,8.33e-30,54;UBERON:0001049,6.99e-27,52;UBERON:0005068,6.99e-27,52;UBERON:0006241,6.99e-27,52;UBERON:0007135,6.99e-27,52;UBERON:0004121,1.56e-25,95;UBERON:0000924,1.56e-25,95;UBERON:0006601,1.56e-25,95;UBERON:0002020,5.87e-24,34;UBERON:0002346,1.22e-21,64;UBERON:0003075,1.22e-21,64;UBERON:0007284,1.22e-21,64;UBERON:0000955,6.87e-21,47;UBERON:0006238,6.87e-21,47;UBERON:0002616,1.35e-19,46;UBERON:0002021,1.91e-19,10;UBERON:0000411,1.91e-19,10;UBERON:0001950,1.91e-19,10;UBERON:0010371,3.47e-19,73;UBERON:0003528,1.23e-17,29;UBERON:0002791,1.23e-17,29;UBERON:0001893,1.23e-17,29;UBERON:0003080,2.49e-16,40;UBERON:0002780,4.44e-15,39;UBERON:0001890,4.44e-15,39;UBERON:0006240,4.44e-15,39;UBERON:0002619,8.51e-15,17;UBERON:0000956,1.42e-13,21;UBERON:0001869,1.42e-13,21;UBERON:0000203,1.42e-13,21;UBERON:0010314,2.09e-13,92;UBERON:0003056,3.07e-12,49;UBERON:0003076,7.46e-12,12;UBERON:0003057,7.46e-12,12;UBERON:0002240,1.49e-09,6;UBERON:0005174,1.49e-09,6;UBERON:0001137,1.49e-09,6;UBERON:0000025,3.27e-09,114;UBERON:0004111,9.23e-09,122;UBERON:0001948,3.63e-08,5;UBERON:0002315,3.63e-08,5;UBERON:0002950,1.36e-07,4;UBERON:0001891,1.36e-07,4;UBERON:0009616,1.36e-07,4;UBERON:0010286,1.36e-07,4;UBERON:0011216,4.63e-07,194 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46625541438102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377690453926732,1.11514624341466,1.28482726513177,0,0.436050312760893,0.439372365468944,0.777719596297134,0.419959264876088,0,0,0,0,0,0,0,1.41621522601718,2.64495489636016,1.26766280701236,0,0,0.449949858640699,0,0,0.898800331555214,0.384218305321555,0.414758449233911,0.135005938331691,0.210324961351382,2.85650984403804,1.10434270475807,0.244981598429908,0.191690942036473,0,5.50579404996943,3.95830748064082,3.37934373163736,0.923204014111357,1.46380229763855,0.52091337055676,1.95428099300967,5.6276261003168,3.0559649555362,3.53554302568401,1.70846016958924,1.86399445825301,0.681535739998656,1.5870027622425,0.289864488701678,0,0,0,0,0,0,0,0,0,1.12674735821344,0,0,0,0,0,0,0.11418387971906,1.29468941823586,0.148442139064825,0,0,0,0,0.117588707135705,0,0,0.144599356919912,0,0,0,0,0,1.17112318804619,1.04723353406728,0.255457055208591,0,0,0,6.89036941262184,5.49000723382352,0.502617408451458,18.7730265807659,16.1100738118108,3.94797284663164,6.97637431191358,0,0.124406970610093,0.252722758433675,0,0,0,0,0,0.204109497453984,0,0.187403449119458,0.517406741478031,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0.469052119962192,0,0,0,0,0,0,0.116765342367169,0,0.164167464079095,0.0810688095458557,0,0,0.134206418760372,9.67333763394985,1.44066457330998,0,0,0,0,0.257734922644187,0.201683524623343,0,0,0,0.164698954724011,0,0,0,0,0.216138049874694,0,0.189667900953082,0.114248512609729,0,0,0,0,0,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0.238043640886014,0.195133647857799,0.472905432318573,0.8858587585951,0.318909537314974,0.163863314715738,0.172684981865896,0,0,0,0.491764273019036,0.275936746304732,3.05046120976805,3.39913891117389,0,0,0.94652465824877,0,1.07711698866399,0.238968797952552,0.222798674082394,0.566153061577665,0.404810701674894,1.16902343164525,1.97643888973262,5.46246237917072,1.13552068166615,0,0.488660878060728,0,0,0.242780636154981,0,0,0.295301892880773,0,0,0,0.356497378384721,0,0,0,0,0,0.129358683782755,0,0.354680467284547,0,0.658196082408484,0,0,0,0,0.16488625294148,0,0.0603129249281559,0,0,0.291480836629851,2.59595422814714,0,0.206386867963223,0,0,0.136694227721025,0,0,0,0,0,0,0.609958401380546,0.108005340821801,0,0.218362563746178,0.134864346384821,0.165306911450672,0,0,0.621339313086926,0,0,0,0,0,0.168956125490778,0,0.13020438484395,0,0,0,0,0,0,0,0,0.198681354781265,0,0,0.100966449948148,0.15241361331,0.100826185136841,0,0.0962118416403295,0,0.226730383615211,0,0,0,0.19318959403219,0.187682475451182,0.183151624267265,0,0,24.2843292325339,14.7304075682297,17.1868654031819,13.0608418581203,17.8121455140367,21.9064230243013,20.925697507186,22.9663813644352,17.2194115413998,18.6393712230655,0,0,0.682934423016537,0.486213434136588,0.209613162627982,0.367687016900028,1.11123363900808,0.412070114477788,0.962757628775446,0.252697211763798,1.01391719956096,0.943131706930381,0.187283014939765,0.192075457214608,0.746661096422973,0.476293691283074,0.579421629724277,0.192909220463705,0,0.735994600671987,1.02860775715625,0.354951612318675,0.953744759789284,0.581385666529314,0.470546902076653,0.846146078916765,0.182927972872773,0.263069711437843,0.950628796921032,1.68342681497322,0.949080144993393,0.492522411877817,0.409231043169689,0.464810523557898,0.385813221962283,0.249810577937946,0.467863216890817,1.28922632428979,0.765153328275374,0.661774257358546,0 | |||
|short_description=p3@Csmd1 | |||
}} |
Latest revision as of 19:40, 1 October 2015
Short description: | p3@Csmd1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Csmd1_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 61bp_to_ENSMUST00000082104, ENSMUST00000131778, ENSMUST00000138348_5end |
EntrezGene: | Csmd1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.17e-13 | 23 |
neuroblast (sensu Vertebrata) | 3.17e-13 | 23 |
neuron | 4.78e-12 | 33 |
neuronal stem cell | 4.78e-12 | 33 |
neuroblast | 4.78e-12 | 33 |
electrically signaling cell | 4.78e-12 | 33 |
electrically responsive cell | 5.23e-12 | 39 |
electrically active cell | 5.23e-12 | 39 |
ectodermal cell | 3.99e-10 | 44 |
neurectodermal cell | 3.99e-10 | 44 |
neural cell | 2.41e-09 | 43 |