FFCP PHASE1:Mm9::chr8:17535251..17535390,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr8:17535251..17535390,-
|short_description=p1@Csmd1
|description=CAGE_peak_1_at_Csmd1_5end
|association_with_transcript=0bp_to_ENSMUST00000082104,ENSMUST00000...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=94109 | |EntrezGene=94109 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2 | |||
|TSSclassifier=NA | |||
|UniProt=Q923L3,Q5DTU1 | |UniProt=Q923L3,Q5DTU1 | ||
|association_with_transcript=0bp_to_ENSMUST00000082104,ENSMUST00000122983,ENSMUST00000131778,ENSMUST00000133933,ENSMUST00000138348,NM_053171,uc009kzp.1,uc009kzq.1,uc009kzr.1_5end | |||
|cluster_id=chr8:17535251..17535390,- | |||
|description=CAGE_peak_1_at_Csmd1_5end | |||
|id=chr8:17535251..17535390,- | |||
|ontology_enrichment_celltype=CL:0000221!4.73e-14!44;CL:0000133!4.73e-14!44;CL:0002319!7.75e-14!43;CL:0000055!1.66e-12!50;CL:0000540!3.92e-12!33;CL:0000047!3.92e-12!33;CL:0000031!3.92e-12!33;CL:0000404!3.92e-12!33;CL:0000117!7.67e-12!23;CL:0000337!7.67e-12!23;CL:0000393!1.80e-11!39;CL:0000211!1.80e-11!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,7.50e-15,44;CL:0000133,7.50e-15,44;CL:0002319,1.27e-14,43;CL:0000540,8.24e-13,33;CL:0000047,8.24e-13,33;CL:0000031,8.24e-13,33;CL:0000404,8.24e-13,33;CL:0000117,1.68e-12,23;CL:0000337,1.68e-12,23;CL:0000393,2.00e-12,39;CL:0000211,2.00e-12,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.94e-29!75;UBERON:0001016!2.94e-29!75;UBERON:0004121!6.42e-29!102;UBERON:0000924!6.42e-29!102;UBERON:0006601!6.42e-29!102;UBERON:0001017!2.98e-28!73;UBERON:0005743!2.98e-28!73;UBERON:0001049!2.18e-22!52;UBERON:0005068!2.18e-22!52;UBERON:0006241!2.18e-22!52;UBERON:0007135!2.18e-22!52;UBERON:0002346!1.44e-21!71;UBERON:0003075!1.44e-21!71;UBERON:0007284!1.44e-21!71;UBERON:0000955!3.41e-21!50;UBERON:0006238!3.41e-21!50;UBERON:0000033!6.91e-21!63;UBERON:0002616!1.59e-20!49;UBERON:0002020!7.66e-19!34;UBERON:0003080!8.11e-17!40;UBERON:0002780!3.49e-16!39;UBERON:0001890!3.49e-16!39;UBERON:0006240!3.49e-16!39;UBERON:0003056!5.44e-16!49;UBERON:0002791!6.87e-16!29;UBERON:0003528!6.87e-16!29;UBERON:0001893!6.87e-16!29;UBERON:0000956!1.23e-11!21;UBERON:0001869!1.23e-11!21;UBERON:0000203!1.23e-11!21;UBERON:0007811!2.07e-11!86;UBERON:0002619!2.73e-10!17;UBERON:0000153!4.40e-10!94;UBERON:0000468!8.05e-10!333;UBERON:0002021!2.91e-08!10;UBERON:0000411!2.91e-08!10;UBERON:0001950!2.91e-08!10;UBERON:0000922!4.61e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.87e-31,75;UBERON:0004121,5.42e-30,95;UBERON:0000924,5.42e-30,95;UBERON:0006601,5.42e-30,95;UBERON:0001017,9.23e-30,73;UBERON:0000073,7.83e-25,54;UBERON:0001049,1.62e-23,52;UBERON:0005068,1.62e-23,52;UBERON:0006241,1.62e-23,52;UBERON:0007135,1.62e-23,52;UBERON:0010371,1.24e-22,73;UBERON:0002346,2.17e-22,64;UBERON:0003075,2.17e-22,64;UBERON:0007284,2.17e-22,64;UBERON:0000955,2.23e-20,47;UBERON:0006238,2.23e-20,47;UBERON:0002020,5.97e-20,34;UBERON:0002616,1.11e-19,46;UBERON:0003080,1.36e-17,40;UBERON:0002780,6.39e-17,39;UBERON:0001890,6.39e-17,39;UBERON:0006240,6.39e-17,39;UBERON:0003528,8.29e-17,29;UBERON:0002791,8.29e-17,29;UBERON:0001893,8.29e-17,29;UBERON:0003056,1.74e-16,49;UBERON:0010314,2.06e-13,92;UBERON:0000956,2.79e-12,21;UBERON:0001869,2.79e-12,21;UBERON:0000203,2.79e-12,21;UBERON:0002619,7.55e-11,17;UBERON:0002021,1.08e-08,10;UBERON:0000411,1.08e-08,10;UBERON:0001950,1.08e-08,10 | |||
|phase1_expression=4.16387002472464,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,20.66551950671,0,0,0,0,0,0,0,0,0,0,0.635030673459631,0,0,0,0,0,0,0,0.523523743973798,0,0,0,17.877348152532,19.1602400004883,42.2157529971868,2.34717403304412,6.5407546914134,5.27246838562732,9.13820525649132,2.79972843250725,1.43752564364972,0,0,0,0,1.43266719969378,0,31.1567349723781,32.797440714866,32.9592329823213,0,0,7.64914759689189,3.9554654502679,4.9733608046227,18.8748069626595,14.2160772968975,15.9682002955056,8.10035629990144,9.67494822216357,32.8498632064374,27.3876990780001,13.8414603112898,9.20116521775069,14.7075005857603,28.6301290598411,39.455387468323,36.4047483817297,33.1034582202787,25.0676143470602,25.0038417867245,15.9134309430787,42.207195752376,43.3947023686141,56.5686884109442,55.8096988732484,53.8694398435119,9.84440513331393,38.768210334781,0.869593466105033,0,0,0,0,0,2.66844398250329,0,0,0,8.59144860637751,0,0,0,0,0,0,2.05530983494308,35.4744900596625,10.6878340126674,1.56136794089522,4.26251669636998,2.7673859670727,3.76806601381556,7.76085467095652,0.879666139307728,0,4.04878199375753,4.42305275974937,0.970601099684455,2.20841518460394,3.87900202508178,0,16.6885054296582,19.8974371472782,1.27728527604296,0,0,0,57.0702336132374,88.2976163439949,28.9005009859588,144.621834399974,157.265006258153,37.8174241098399,78.2002887986592,2.64782346010822,6.46916247172484,3.79084137650512,4.62972082950243,0.520481771850815,1.60931473103431,2.88099407688559,3.0140963567143,3.94611695077702,3.58718416797579,3.37326208415024,7.50239775143145,0,0.378212160335639,0.175951124163949,0.657587197282725,1.39023624612799,1.0447564995665,1.02891068203972,0.398068533636986,0,0,0,0.207125772535502,0,0.900310307305074,0.473489471170421,0.196764231747404,0.308534225774757,0.930135779001631,0.268273401399619,0.467061369468678,0.329119699826961,0.820837320395476,0.972825714550269,1.60819986167866,1.75640092232841,1.34206418760372,105.565554179192,34.5759497594396,0.330418782983798,0.528901133327089,0.853153002140936,0.928946687441754,0.902072229254653,1.00841762311671,0.667134131534611,0.760902504450237,1.42358718463353,0.658795818896044,1.00534083520108,1.1937388322469,0.974820435595601,0.898819408654221,0.864552199498777,1.7922714592893,0,0.799739588268102,0,0,0.775809948670503,0.911765658574141,0.885311519739602,1.62371162777562,0.941992367048249,1.35736880313981,0,0.166845105716094,0.196558995113203,0,0,0.241177159752417,0,0,0,0,0,0.372140947668503,0,0,0,0.482443521363367,1.10851914099963,2.08440552947533,0.325929952884052,0.848725428875941,0.704070744865506,1.00503754465089,2.38043640886014,4.09780660501378,6.14777062014145,4.4292937929755,5.26200736569707,2.13022309130459,2.76295970985433,1.15719246865209,0,0,4.42587845717133,8.82997588175144,28.2569038378514,27.5447463491677,0,2.7771801992481,1.89304931649754,3.12350995437311,6.89354872744957,5.01834475700359,7.12955757063661,10.190755108398,2.02405350837447,9.64444331107329,7.90575555893047,60.0870861708779,40.7368044547731,1.95872164033981,8.1443479676788,11.71287873105,0,1.21390318077491,1.209294227859,0.754420319023592,0.885905678642318,2.15204603560749,1.80899805217755,1.45413491791002,0.356497378384721,2.21225730555071,1.05418608574999,1.03135543248187,0.340439605753788,3.96134406868882,1.94038025674132,3.42939256050548,5.14286677562593,5.88617098086833,8.22745103010605,5.17590413494819,0.469343416127421,0,2.64634077665954,8.40919890001548,1.29171541356724,1.14594557363496,2.14870219205646,2.46211349617592,0.874442509889552,28.9263471136395,5.46786818553129,0.206386867963223,0.185194527369712,3.20226376907975,3.14396723758358,3.88922894451088,0,0,0,0,0.474503990371703,1.42323626988794,1.08005340821801,1.46361807210128,1.31017538247707,1.61837215661785,2.14898984885873,2.09404753587224,1.16653475962614,4.97071450469541,0,0.149516546043979,0,0,0.129159823477731,0.337912250981556,0.352071715937262,1.17183946359555,0.419437377702843,0,0.576060012515731,3.79213344753814,0.608175645870493,0.513554785824136,1.16928740680016,1.25318686967237,0.39736270956253,1.32214994471966,1.9199638532695,1.21159739937777,0.762068066549998,1.31074040677893,2.24153125701431,1.15454209968395,1.5193997283604,4.30787728868902,0,0,0.167884616364078,6.76163579112667,14.451550609741,5.86085197655248,7.71726164684637,1.50471631210609,179.02633410961,152.367653283876,160.98363927647,139.716637245418,163.734722225184,145.791022196212,161.330377555402,140.500215405957,157.693558326503,157.916895084305,0.103787347584177,5.1873233542134,10.0732827394939,12.1553358534147,1.25767897576789,3.49302666055027,12.0013233012872,13.1862436632892,13.1576875932644,15.1618327058278,13.1809235942925,9.99719609346204,9.45779225445812,11.268426823257,11.3722228532114,15.2413981210584,12.3996228760995,12.3461901096771,10.714233420886,11.6287146906174,9.60033906679163,8.69631450180754,9.53744759789284,11.7730597472186,11.2931256498397,10.9152844180263,10.7927503994936,10.2597187460759,9.09887562767274,15.1508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| |phase1_expression=4.16387002472464,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,20.66551950671,0,0,0,0,0,0,0,0,0,0,0.635030673459631,0,0,0,0,0,0,0,0.523523743973798,0,0,0,17.877348152532,19.1602400004883,42.2157529971868,2.34717403304412,6.5407546914134,5.27246838562732,9.13820525649132,2.79972843250725,1.43752564364972,0,0,0,0,1.43266719969378,0,31.1567349723781,32.797440714866,32.9592329823213,0,0,7.64914759689189,3.9554654502679,4.9733608046227,18.8748069626595,14.2160772968975,15.9682002955056,8.10035629990144,9.67494822216357,32.8498632064374,27.3876990780001,13.8414603112898,9.20116521775069,14.7075005857603,28.6301290598411,39.455387468323,36.4047483817297,33.1034582202787,25.0676143470602,25.0038417867245,15.9134309430787,42.207195752376,43.3947023686141,56.5686884109442,55.8096988732484,53.8694398435119,9.84440513331393,38.768210334781,0.869593466105033,0,0,0,0,0,2.66844398250329,0,0,0,8.59144860637751,0,0,0,0,0,0,2.05530983494308,35.4744900596625,10.6878340126674,1.56136794089522,4.26251669636998,2.7673859670727,3.76806601381556,7.76085467095652,0.879666139307728,0,4.04878199375753,4.42305275974937,0.970601099684455,2.20841518460394,3.87900202508178,0,16.6885054296582,19.8974371472782,1.27728527604296,0,0,0,57.0702336132374,88.2976163439949,28.9005009859588,144.621834399974,157.265006258153,37.8174241098399,78.2002887986592,2.64782346010822,6.46916247172484,3.79084137650512,4.62972082950243,0.520481771850815,1.60931473103431,2.88099407688559,3.0140963567143,3.94611695077702,3.58718416797579,3.37326208415024,7.50239775143145,0,0.378212160335639,0.175951124163949,0.657587197282725,1.39023624612799,1.0447564995665,1.02891068203972,0.398068533636986,0,0,0,0.207125772535502,0,0.900310307305074,0.473489471170421,0.196764231747404,0.308534225774757,0.930135779001631,0.268273401399619,0.467061369468678,0.329119699826961,0.820837320395476,0.972825714550269,1.60819986167866,1.75640092232841,1.34206418760372,105.565554179192,34.5759497594396,0.330418782983798,0.528901133327089,0.853153002140936,0.928946687441754,0.902072229254653,1.00841762311671,0.667134131534611,0.760902504450237,1.42358718463353,0.658795818896044,1.00534083520108,1.1937388322469,0.974820435595601,0.898819408654221,0.864552199498777,1.7922714592893,0,0.799739588268102,0,0,0.775809948670503,0.911765658574141,0.885311519739602,1.62371162777562,0.941992367048249,1.35736880313981,0,0.166845105716094,0.196558995113203,0,0,0.241177159752417,0,0,0,0,0,0.372140947668503,0,0,0,0.482443521363367,1.10851914099963,2.08440552947533,0.325929952884052,0.848725428875941,0.704070744865506,1.00503754465089,2.38043640886014,4.09780660501378,6.14777062014145,4.4292937929755,5.26200736569707,2.13022309130459,2.76295970985433,1.15719246865209,0,0,4.42587845717133,8.82997588175144,28.2569038378514,27.5447463491677,0,2.7771801992481,1.89304931649754,3.12350995437311,6.89354872744957,5.01834475700359,7.12955757063661,10.190755108398,2.02405350837447,9.64444331107329,7.90575555893047,60.0870861708779,40.7368044547731,1.95872164033981,8.1443479676788,11.71287873105,0,1.21390318077491,1.209294227859,0.754420319023592,0.885905678642318,2.15204603560749,1.80899805217755,1.45413491791002,0.356497378384721,2.21225730555071,1.05418608574999,1.03135543248187,0.340439605753788,3.96134406868882,1.94038025674132,3.42939256050548,5.14286677562593,5.88617098086833,8.22745103010605,5.17590413494819,0.469343416127421,0,2.64634077665954,8.40919890001548,1.29171541356724,1.14594557363496,2.14870219205646,2.46211349617592,0.874442509889552,28.9263471136395,5.46786818553129,0.206386867963223,0.185194527369712,3.20226376907975,3.14396723758358,3.88922894451088,0,0,0,0,0.474503990371703,1.42323626988794,1.08005340821801,1.46361807210128,1.31017538247707,1.61837215661785,2.14898984885873,2.09404753587224,1.16653475962614,4.97071450469541,0,0.149516546043979,0,0,0.129159823477731,0.337912250981556,0.352071715937262,1.17183946359555,0.419437377702843,0,0.576060012515731,3.79213344753814,0.608175645870493,0.513554785824136,1.16928740680016,1.25318686967237,0.39736270956253,1.32214994471966,1.9199638532695,1.21159739937777,0.762068066549998,1.31074040677893,2.24153125701431,1.15454209968395,1.5193997283604,4.30787728868902,0,0,0.167884616364078,6.76163579112667,14.451550609741,5.86085197655248,7.71726164684637,1.50471631210609,179.02633410961,152.367653283876,160.98363927647,139.716637245418,163.734722225184,145.791022196212,161.330377555402,140.500215405957,157.693558326503,157.916895084305,0.103787347584177,5.1873233542134,10.0732827394939,12.1553358534147,1.25767897576789,3.49302666055027,12.0013233012872,13.1862436632892,13.1576875932644,15.1618327058278,13.1809235942925,9.99719609346204,9.45779225445812,11.268426823257,11.3722228532114,15.2413981210584,12.3996228760995,12.3461901096771,10.714233420886,11.6287146906174,9.60033906679163,8.69631450180754,9.53744759789284,11.7730597472186,11.2931256498397,10.9152844180263,10.7927503994936,10.2597187460759,9.09887562767274,15.1508413347589,12.5753119211625,13.1010961559499,11.0492381655816,10.8455788830176,9.83823716003821,17.2369298777183,10.292990771598,8.16510005383534,4.01705497344571,2.42650561031467,4.17362104116759 | ||
|short_description=p1@Csmd1 | |||
}} | }} |
Latest revision as of 19:40, 1 October 2015
Short description: | p1@Csmd1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Csmd1_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 0bp_to_ENSMUST00000082104, ENSMUST00000122983, ENSMUST00000131778, ENSMUST00000133933, ENSMUST00000138348, NM_053171, uc009kzp.1, uc009kzq.1, uc009kzr.1_5end |
EntrezGene: | Csmd1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 7.50e-15 | 44 |
neurectodermal cell | 7.50e-15 | 44 |
neural cell | 1.27e-14 | 43 |
neuron | 8.24e-13 | 33 |
neuronal stem cell | 8.24e-13 | 33 |
neuroblast | 8.24e-13 | 33 |
electrically signaling cell | 8.24e-13 | 33 |
CNS neuron (sensu Vertebrata) | 1.68e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.68e-12 | 23 |
electrically responsive cell | 2.00e-12 | 39 |
electrically active cell | 2.00e-12 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 7.87e-31 | 75 |
ectoderm-derived structure | 5.42e-30 | 95 |
ectoderm | 5.42e-30 | 95 |
presumptive ectoderm | 5.42e-30 | 95 |
central nervous system | 9.23e-30 | 73 |
regional part of nervous system | 7.83e-25 | 54 |
neural tube | 1.62e-23 | 52 |
neural rod | 1.62e-23 | 52 |
future spinal cord | 1.62e-23 | 52 |
neural keel | 1.62e-23 | 52 |
ecto-epithelium | 1.24e-22 | 73 |
neurectoderm | 2.17e-22 | 64 |
neural plate | 2.17e-22 | 64 |
presumptive neural plate | 2.17e-22 | 64 |
brain | 2.23e-20 | 47 |
future brain | 2.23e-20 | 47 |
gray matter | 5.97e-20 | 34 |
regional part of brain | 1.11e-19 | 46 |
anterior neural tube | 1.36e-17 | 40 |
regional part of forebrain | 6.39e-17 | 39 |
forebrain | 6.39e-17 | 39 |
future forebrain | 6.39e-17 | 39 |
brain grey matter | 8.29e-17 | 29 |
regional part of telencephalon | 8.29e-17 | 29 |
telencephalon | 8.29e-17 | 29 |
pre-chordal neural plate | 1.74e-16 | 49 |
structure with developmental contribution from neural crest | 2.06e-13 | 92 |
cerebral cortex | 2.79e-12 | 21 |
cerebral hemisphere | 2.79e-12 | 21 |
pallium | 2.79e-12 | 21 |
regional part of cerebral cortex | 7.55e-11 | 17 |
occipital lobe | 1.08e-08 | 10 |
visual cortex | 1.08e-08 | 10 |
neocortex | 1.08e-08 | 10 |