FFCP PHASE1:Mm9::chrX:34529678..34529699,-: Difference between revisions
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{{FFCP|EntrezGene=56526|HGNC=|MCL_coexpression_id=13|UniProt=Q9R1T4|association_with_transcript=0bp_to_NM_001177323,NM_001177324,NM_001253706,NM_019942,NR_033443,uc009sxx.2,uc009sxz.2,uc009sya.2_5end|description=CAGE_peak_4_at_Sept6_5end|id=chrX:34529678..34529699,-|ontology_enrichment_celltype=CL:0000117!2.56e-14!23;CL:0000337!2.56e-14!23;CL:0000540!5.69e-11!33;CL:0000047!5.69e-11!33;CL:0000031!5.69e-11!33;CL:0000404!5.69e-11!33;CL:0000393!4.16e-08!39;CL:0000211!4.16e-08!39|ontology_enrichment_celltype_v019_2=CL:0000117,9.14e-16,23;CL:0000337,9.14e-16,23;CL:0000540,2.23e-11,33;CL:0000047,2.23e-11,33;CL:0000031,2.23e-11,33;CL:0000404,2.23e-11,33;CL:0000393,1.05e-08,39;CL:0000211,1.05e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000153!9.13e-21!94;UBERON:0007811!2.33e-20!86;UBERON:0002346!6.27e-19!71;UBERON:0003075!6.27e-19!71;UBERON:0007284!6.27e-19!71;UBERON:0001049!5.32e-17!52;UBERON:0005068!5.32e-17!52;UBERON:0006241!5.32e-17!52;UBERON:0007135!5.32e-17!52;UBERON:0000955!2.00e-16!50;UBERON:0006238!2.00e-16!50;UBERON:0001017!3.17e-16!73;UBERON:0005743!3.17e-16!73;UBERON:0000033!4.50e-16!63;UBERON:0002616!6.85e-16!49;UBERON:0000073!3.01e-15!75;UBERON:0001016!3.01e-15!75;UBERON:0002020!2.59e-14!34;UBERON:0003056!9.36e-14!49;UBERON:0004121!1.54e-13!102;UBERON:0000924!1.54e-13!102;UBERON:0006601!1.54e-13!102;UBERON:0003080!4.60e-13!40;UBERON:0002780!1.86e-12!39;UBERON:0001890!1.86e-12!39;UBERON:0006240!1.86e-12!39;UBERON:0002791!7.75e-12!29;UBERON:0003528!7.75e-12!29;UBERON:0001893!7.75e-12!29;UBERON:0000956!1.20e-07!21;UBERON:0001869!1.20e-07!21;UBERON:0000203!1.20e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.39e-20,54;UBERON:0010314,1.51e-19,92;UBERON:0002346,1.86e-19,64;UBERON:0003075,1.86e-19,64;UBERON:0007284,1.86e-19,64;UBERON:0001049,1.05e-18,52;UBERON:0005068,1.05e-18,52;UBERON:0006241,1.05e-18,52;UBERON:0007135,1.05e-18,52;UBERON:0001017,4.34e-18,73;UBERON:0001016,7.59e-17,75;UBERON:0002020,1.71e-16,34;UBERON:0000955,6.00e-16,47;UBERON:0006238,6.00e-16,47;UBERON:0002616,2.26e-15,46;UBERON:0010371,2.69e-15,73;UBERON:0003056,3.82e-15,49;UBERON:0003080,2.63e-14,40;UBERON:0003528,1.03e-13,29;UBERON:0002791,1.03e-13,29;UBERON:0001893,1.03e-13,29;UBERON:0002780,1.24e-13,39;UBERON:0001890,1.24e-13,39;UBERON:0006240,1.24e-13,39;UBERON:0004121,3.75e-13,95;UBERON:0000924,3.75e-13,95;UBERON:0006601,3.75e-13,95;UBERON:0000956,5.50e-09,21;UBERON:0001869,5.50e-09,21;UBERON:0000203,5.50e-09,21;UBERON:0002619,3.12e-07,17|phase1_expression=2.40223270657191,0,0,0,0,0,0.467225281191051,2.84071311571468,2.111830832275,2.57470978954193,1.19852577757853,0.957265907944037,2.56801094896809,2.09808965805594,0,0.202475267389826,0,1.57731082679119,0.548457734422955,0.84877930359606,1.02051948181284,0.595745707205312,1.04479915655574,0.319984845586813,0.68822784320151,0,0,0,0,0.504060259519861,0.221730510655305,0,0,0,0.288851619751275,0.664938581433969,0.816677425049476,1.25559489221072,2.3440060335714,0.523523743973798,1.17646297606203,0.683045484958446,0.971020706062307,0.755380907853464,0,0.183546752161682,0.782391344348039,0,0,0,0.419959264876088,0,1.67782606057736,2.17608642603403,0.672187598284928,1.80081605225163,1.14613375975503,0,7.08107613008592,7.93486468908049,8.87363964908651,0.338844532069132,0,0,0,0,0,0,2.7996195323289,2.29510095163874,3.78584930432488,3.14216082844184,1.98781686856452,7.34944795289724,5.07980996396653,4.5960939330501,11.0115880999389,6.12899222808901,6.29786786350598,8.70449499019279,8.59983849862651,10.939180781692,7.81712397203867,3.93933827022176,5.34793867218835,5.89257170947335,4.55589378557129,8.01517617048792,0.454357159999104,0.529000920747499,0,0,0,0,0,0,0.421333260395256,0.511290967734173,0.259786004602869,1.06001872353102,0.985903938436763,0,5.09610479413291,0,0,0.253359865475099,0.505524445014783,0.5709193985953,0.776813650941515,1.48442139064825,1.73485326766136,2.74018930480927,1.38369298353635,1.95939432718409,1.76383060703557,1.38233250462643,0,0.433798070759735,1.76922110389975,1.7794353494215,0.662524555381181,0,0,7.90508151931177,6.49284791121711,0.510914110417183,1.1981512450592,1.19980546198682,1.27070227073065,6.89036941262184,1.83000241127451,4.14659361972453,3.65031072403781,4.34716277461562,4.1557608911912,2.92034273521964,0.611036183101898,1.24406970610093,0,0.420883711772948,2.08192708740326,3.21862946206862,2.16074555766419,1.9591626318643,1.90502197623718,2.43416068541215,2.24884138943349,0.258703370739016,0.862271971731369,3.40390944302075,2.63926686245923,1.53437012699302,3.05851974148158,1.0447564995665,0.823128545631774,1.39323986772945,0.702213187313235,0.257347907114715,0,1.65700618028402,1.87620847984877,1.98068267607116,0.473489471170421,1.96764231747404,2.00547246753592,1.86027155800326,2.41446061259657,1.86824547787471,2.13927804887525,2.29834449710733,0.891756905004413,1.31579988682799,0.439100230582101,0.536825675041487,4.20579897128254,5.65975368086064,0.660837565967596,0.264450566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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=56526 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=Q9R1T4 | |||
|association_with_transcript=0bp_to_NM_001177323,NM_001177324,NM_001253706,NM_019942,NR_033443,uc009sxx.2,uc009sxz.2,uc009sya.2_5end | |||
|cluster_id=chrX:34529678..34529699,- | |||
|description=CAGE_peak_4_at_Sept6_5end | |||
|id=chrX:34529678..34529699,- | |||
|ontology_enrichment_celltype=CL:0000117!2.56e-14!23;CL:0000337!2.56e-14!23;CL:0000540!5.69e-11!33;CL:0000047!5.69e-11!33;CL:0000031!5.69e-11!33;CL:0000404!5.69e-11!33;CL:0000393!4.16e-08!39;CL:0000211!4.16e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,9.14e-16,23;CL:0000337,9.14e-16,23;CL:0000540,2.23e-11,33;CL:0000047,2.23e-11,33;CL:0000031,2.23e-11,33;CL:0000404,2.23e-11,33;CL:0000393,1.05e-08,39;CL:0000211,1.05e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!9.13e-21!94;UBERON:0007811!2.33e-20!86;UBERON:0002346!6.27e-19!71;UBERON:0003075!6.27e-19!71;UBERON:0007284!6.27e-19!71;UBERON:0001049!5.32e-17!52;UBERON:0005068!5.32e-17!52;UBERON:0006241!5.32e-17!52;UBERON:0007135!5.32e-17!52;UBERON:0000955!2.00e-16!50;UBERON:0006238!2.00e-16!50;UBERON:0001017!3.17e-16!73;UBERON:0005743!3.17e-16!73;UBERON:0000033!4.50e-16!63;UBERON:0002616!6.85e-16!49;UBERON:0000073!3.01e-15!75;UBERON:0001016!3.01e-15!75;UBERON:0002020!2.59e-14!34;UBERON:0003056!9.36e-14!49;UBERON:0004121!1.54e-13!102;UBERON:0000924!1.54e-13!102;UBERON:0006601!1.54e-13!102;UBERON:0003080!4.60e-13!40;UBERON:0002780!1.86e-12!39;UBERON:0001890!1.86e-12!39;UBERON:0006240!1.86e-12!39;UBERON:0002791!7.75e-12!29;UBERON:0003528!7.75e-12!29;UBERON:0001893!7.75e-12!29;UBERON:0000956!1.20e-07!21;UBERON:0001869!1.20e-07!21;UBERON:0000203!1.20e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.39e-20,54;UBERON:0010314,1.51e-19,92;UBERON:0002346,1.86e-19,64;UBERON:0003075,1.86e-19,64;UBERON:0007284,1.86e-19,64;UBERON:0001049,1.05e-18,52;UBERON:0005068,1.05e-18,52;UBERON:0006241,1.05e-18,52;UBERON:0007135,1.05e-18,52;UBERON:0001017,4.34e-18,73;UBERON:0001016,7.59e-17,75;UBERON:0002020,1.71e-16,34;UBERON:0000955,6.00e-16,47;UBERON:0006238,6.00e-16,47;UBERON:0002616,2.26e-15,46;UBERON:0010371,2.69e-15,73;UBERON:0003056,3.82e-15,49;UBERON:0003080,2.63e-14,40;UBERON:0003528,1.03e-13,29;UBERON:0002791,1.03e-13,29;UBERON:0001893,1.03e-13,29;UBERON:0002780,1.24e-13,39;UBERON:0001890,1.24e-13,39;UBERON:0006240,1.24e-13,39;UBERON:0004121,3.75e-13,95;UBERON:0000924,3.75e-13,95;UBERON:0006601,3.75e-13,95;UBERON:0000956,5.50e-09,21;UBERON:0001869,5.50e-09,21;UBERON:0000203,5.50e-09,21;UBERON:0002619,3.12e-07,17 | |||
|phase1_expression=2.40223270657191,0,0,0,0,0,0.467225281191051,2.84071311571468,2.111830832275,2.57470978954193,1.19852577757853,0.957265907944037,2.56801094896809,2.09808965805594,0,0.202475267389826,0,1.57731082679119,0.548457734422955,0.84877930359606,1.02051948181284,0.595745707205312,1.04479915655574,0.319984845586813,0.68822784320151,0,0,0,0,0.504060259519861,0.221730510655305,0,0,0,0.288851619751275,0.664938581433969,0.816677425049476,1.25559489221072,2.3440060335714,0.523523743973798,1.17646297606203,0.683045484958446,0.971020706062307,0.755380907853464,0,0.183546752161682,0.782391344348039,0,0,0,0.419959264876088,0,1.67782606057736,2.17608642603403,0.672187598284928,1.80081605225163,1.14613375975503,0,7.08107613008592,7.93486468908049,8.87363964908651,0.338844532069132,0,0,0,0,0,0,2.7996195323289,2.29510095163874,3.78584930432488,3.14216082844184,1.98781686856452,7.34944795289724,5.07980996396653,4.5960939330501,11.0115880999389,6.12899222808901,6.29786786350598,8.70449499019279,8.59983849862651,10.939180781692,7.81712397203867,3.93933827022176,5.34793867218835,5.89257170947335,4.55589378557129,8.01517617048792,0.454357159999104,0.529000920747499,0,0,0,0,0,0,0.421333260395256,0.511290967734173,0.259786004602869,1.06001872353102,0.985903938436763,0,5.09610479413291,0,0,0.253359865475099,0.505524445014783,0.5709193985953,0.776813650941515,1.48442139064825,1.73485326766136,2.74018930480927,1.38369298353635,1.95939432718409,1.76383060703557,1.38233250462643,0,0.433798070759735,1.76922110389975,1.7794353494215,0.662524555381181,0,0,7.90508151931177,6.49284791121711,0.510914110417183,1.1981512450592,1.19980546198682,1.27070227073065,6.89036941262184,1.83000241127451,4.14659361972453,3.65031072403781,4.34716277461562,4.1557608911912,2.92034273521964,0.611036183101898,1.24406970610093,0,0.420883711772948,2.08192708740326,3.21862946206862,2.16074555766419,1.9591626318643,1.90502197623718,2.43416068541215,2.24884138943349,0.258703370739016,0.862271971731369,3.40390944302075,2.63926686245923,1.53437012699302,3.05851974148158,1.0447564995665,0.823128545631774,1.39323986772945,0.702213187313235,0.257347907114715,0,1.65700618028402,1.87620847984877,1.98068267607116,0.473489471170421,1.96764231747404,2.00547246753592,1.86027155800326,2.41446061259657,1.86824547787471,2.13927804887525,2.29834449710733,0.891756905004413,1.31579988682799,0.439100230582101,0.536825675041487,4.20579897128254,5.65975368086064,0.660837565967596,0.264450566663544,1.70630600428187,1.16118335930219,0.902072229254653,0.403367049246685,0.444756087689741,1.33157938278791,0.474529061544512,0.823494773620054,0.502670417600539,0.994782360205754,1.9496408711912,0,0,0.398282546508734,1.51734320762465,1.14248512609729,1.1270773567308,0.814605311381257,1.16371492300575,0.420814919341911,0.885311519739602,0.295220295959204,0.470996183524124,0.740382983530803,0,0.166845105716094,0.393117990226406,0.899448449539415,0,0.482354319504834,0.25462585178142,0.575392274901621,0.162135226775035,0,1.43768206527355,0,0.624075346229121,0.757736633841335,0,0,1.47802552133284,1.70542270593436,1.14075483509418,1.18821560042632,1.40814148973101,1.17254380209271,0.952174563544055,0,0.945810864637146,1.32878813789265,1.75400245523236,0.81931657357869,0.863424909329478,0.578596234326046,1.50791283939272,0,0,0.275936746304732,5.29816946959713,5.97779601620236,0.163934945376675,0.504941854408746,0.94652465824877,1.95219372148319,1.93881057959519,0.238968797952552,1.33679204449436,0.849229592366497,0,1.75353514746787,0.790575555893047,4.17717711348349,0.99358059645788,2.67098405500883,0.325773918707152,1.31976098378028,0,0.728341908464944,0.604647113929502,0.377210159511796,0.590603785761546,0.922305443831782,1.29214146584111,1.09060118843252,1.78248689192361,0.316036757935816,0,0,0.680879211507576,1.26042765821917,1.94038025674132,3.42939256050548,1.59606210278046,1.60531935841864,0.987294123612726,1.8267896946876,0,0,0.882113592219848,0.49465875882444,0.968786560175433,1.38719727334758,0.716234064018819,0.656563598980245,0,3.33765543618917,0.854354403989263,1.44470807574256,1.48155621895769,1.69531611304222,0.546776910884101,0.228778173206523,1.35982743995084,1.6794174278839,1.10559979043539,0.954670618015114,2.05618395827738,1.01659733563424,1.08005340821801,1.25452977608681,1.74690050996942,0.269728692769641,0.909188012978695,0.785267825952089,0.259229946583586,0,1.69107881605257,1.64468200648377,0.66183396182839,0.972255941720238,1.42075805825504,0.506868376472335,0.821500670520278,1.95306577265925,1.8874681996628,0,0.288030006257865,2.52808896502543,1.62180172232131,1.43795340030758,1.16928740680016,1.61124026100733,1.98681354781265,3.24527713703916,2.80610101631697,2.42319479875554,2.97206545954499,2.92395936896837,2.72882066071307,3.36741445741153,3.15567635890236,0.906921534460845,0,0.0897138566094757,0,1.73870634628971,0.750729901804728,0.549454872801795,0.643105137237198,0,3.95326289831947,5.52390283808612,2.29158205375759,3.09335728218638,1.37016503954128,4.53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| |||
|short_description=p4@Sept6 | |||
}} |
Latest revision as of 20:04, 1 October 2015
Short description: | p4@Sept6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Sept6_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_NM_001177323, NM_001177324, NM_001253706, NM_019942, NR_033443, uc009sxx.2, uc009sxz.2, uc009sya.2_5end |
EntrezGene: | Sept6 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 9.14e-16 | 23 |
neuroblast (sensu Vertebrata) | 9.14e-16 | 23 |
neuron | 2.23e-11 | 33 |
neuronal stem cell | 2.23e-11 | 33 |
neuroblast | 2.23e-11 | 33 |
electrically signaling cell | 2.23e-11 | 33 |
electrically responsive cell | 1.05e-08 | 39 |
electrically active cell | 1.05e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.39e-20 | 54 |
structure with developmental contribution from neural crest | 1.51e-19 | 92 |
neurectoderm | 1.86e-19 | 64 |
neural plate | 1.86e-19 | 64 |
presumptive neural plate | 1.86e-19 | 64 |
neural tube | 1.05e-18 | 52 |
neural rod | 1.05e-18 | 52 |
future spinal cord | 1.05e-18 | 52 |
neural keel | 1.05e-18 | 52 |
central nervous system | 4.34e-18 | 73 |
nervous system | 7.59e-17 | 75 |
gray matter | 1.71e-16 | 34 |
brain | 6.00e-16 | 47 |
future brain | 6.00e-16 | 47 |
regional part of brain | 2.26e-15 | 46 |
ecto-epithelium | 2.69e-15 | 73 |
pre-chordal neural plate | 3.82e-15 | 49 |
anterior neural tube | 2.63e-14 | 40 |
brain grey matter | 1.03e-13 | 29 |
regional part of telencephalon | 1.03e-13 | 29 |
telencephalon | 1.03e-13 | 29 |
regional part of forebrain | 1.24e-13 | 39 |
forebrain | 1.24e-13 | 39 |
future forebrain | 1.24e-13 | 39 |
ectoderm-derived structure | 3.75e-13 | 95 |
ectoderm | 3.75e-13 | 95 |
presumptive ectoderm | 3.75e-13 | 95 |
cerebral cortex | 5.50e-09 | 21 |
cerebral hemisphere | 5.50e-09 | 21 |
pallium | 5.50e-09 | 21 |
regional part of cerebral cortex | 3.12e-07 | 17 |