FFCP PHASE1:Mm9::chr2:113669172..113669225,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:113669172..113669225,-
|short_description=p1@Scg5
|description=CAGE_peak_1_at_Scg5_5end
|association_with_transcript=22bp_to_NM_009162,uc008lpq.1_5end
|En...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=20394 | |EntrezGene=20394 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=278 | |||
|TSSclassifier=NA | |||
|UniProt=P12961,Q3TT51 | |UniProt=P12961,Q3TT51 | ||
|association_with_transcript=22bp_to_NM_009162,uc008lpq.1_5end | |||
|cluster_id=chr2:113669172..113669225,- | |||
|description=CAGE_peak_1_at_Scg5_5end | |||
|id=chr2:113669172..113669225,- | |||
|ontology_enrichment_celltype=CL:0000221!4.20e-15!44;CL:0000133!4.20e-15!44;CL:0002319!8.35e-15!43;CL:0000540!8.75e-14!33;CL:0000047!8.75e-14!33;CL:0000031!8.75e-14!33;CL:0000404!8.75e-14!33;CL:0000117!5.04e-13!23;CL:0000337!5.04e-13!23;CL:0000055!2.07e-09!50;CL:0000393!1.04e-08!39;CL:0000211!1.04e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,5.64e-16,44;CL:0000133,5.64e-16,44;CL:0002319,1.16e-15,43;CL:0000540,2.07e-14,33;CL:0000047,2.07e-14,33;CL:0000031,2.07e-14,33;CL:0000404,2.07e-14,33;CL:0000117,1.31e-13,23;CL:0000337,1.31e-13,23;CL:0000393,1.76e-09,39;CL:0000211,1.76e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.55e-34!73;UBERON:0005743!2.55e-34!73;UBERON:0000073!4.53e-34!75;UBERON:0001016!4.53e-34!75;UBERON:0004121!1.67e-31!102;UBERON:0000924!1.67e-31!102;UBERON:0006601!1.67e-31!102;UBERON:0002346!3.98e-31!71;UBERON:0003075!3.98e-31!71;UBERON:0007284!3.98e-31!71;UBERON:0000033!1.83e-27!63;UBERON:0001049!1.15e-26!52;UBERON:0005068!1.15e-26!52;UBERON:0006241!1.15e-26!52;UBERON:0007135!1.15e-26!52;UBERON:0000955!7.09e-26!50;UBERON:0006238!7.09e-26!50;UBERON:0002616!2.79e-25!49;UBERON:0003056!6.57e-24!49;UBERON:0003080!2.25e-21!40;UBERON:0002780!9.96e-21!39;UBERON:0001890!9.96e-21!39;UBERON:0006240!9.96e-21!39;UBERON:0002020!4.80e-19!34;UBERON:0002791!3.10e-16!29;UBERON:0003528!3.10e-16!29;UBERON:0001893!3.10e-16!29;UBERON:0007811!7.27e-16!86;UBERON:0000153!6.49e-13!94;UBERON:0000956!1.14e-11!21;UBERON:0001869!1.14e-11!21;UBERON:0000203!1.14e-11!21;UBERON:0002619!4.55e-10!17;UBERON:0002021!1.03e-07!10;UBERON:0000411!1.03e-07!10;UBERON:0001950!1.03e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.14e-36,73;UBERON:0001016,5.78e-36,75;UBERON:0002346,5.23e-32,64;UBERON:0003075,5.23e-32,64;UBERON:0007284,5.23e-32,64;UBERON:0004121,1.08e-31,95;UBERON:0000924,1.08e-31,95;UBERON:0006601,1.08e-31,95;UBERON:0000073,5.61e-30,54;UBERON:0001049,3.52e-28,52;UBERON:0005068,3.52e-28,52;UBERON:0006241,3.52e-28,52;UBERON:0007135,3.52e-28,52;UBERON:0010371,1.06e-25,73;UBERON:0003056,4.68e-25,49;UBERON:0000955,6.01e-25,47;UBERON:0006238,6.01e-25,47;UBERON:0002616,2.47e-24,46;UBERON:0003080,2.17e-22,40;UBERON:0002780,1.04e-21,39;UBERON:0001890,1.04e-21,39;UBERON:0006240,1.04e-21,39;UBERON:0002020,6.09e-20,34;UBERON:0010314,4.48e-18,92;UBERON:0003528,5.50e-17,29;UBERON:0002791,5.50e-17,29;UBERON:0001893,5.50e-17,29;UBERON:0000956,3.46e-12,21;UBERON:0001869,3.46e-12,21;UBERON:0000203,3.46e-12,21;UBERON:0002619,1.67e-10,17;UBERON:0002021,4.96e-08,10;UBERON:0000411,4.96e-08,10;UBERON:0001950,4.96e-08,10 | |||
|phase1_expression=34.7522998217403,32.1057375028212,55.0549079661339,0,0,28.0358384092856,95.54757000357,4.13194635013044,0,0,0,0,1.36960583944965,4.54586092578786,0,0,0,0,0.274228867211478,0,56.5537879504614,0,0,81.2761507790506,128.239788116548,68.3336037296874,99.5060211127463,98.4703533374513,2.85035129184561,1.76421090831952,90.9095093686749,0,0,0,0,0.498703936075477,0,0,0,0,0,0,0,0,0,0.183546752161682,0,120.349886322006,32.7332412274363,28.5811951639197,22.2578410384326,37.3756667348926,0,1.45072428402269,0.672187598284928,0.257259436035947,0,0,123.615357585214,143.885546361993,127.400112104742,0.677689064138264,0.889294796111139,0.449949858640699,0,0,33.2556122675429,70.3119498738445,50.3931515819201,56.8375000376418,58.6806642170356,244.517242649656,240.746709637259,66.634994772935,70.6381121404402,71.6990653555816,372.191677777934,509.600166297984,522.262213071228,134.260240909337,134.120885521133,118.768248486941,612.52749980903,530.122378649843,456.561164357109,153.796121617255,162.873202834174,132.530005981789,7.04253597998612,9.21973033302783,0.869593466105033,0,0.679971333707751,0.539703191637817,0,0,15.0275529540974,0,0,0,31.2672391904231,0,0,0,0,0.253359865475099,0,10.2765491747154,1.03575153458869,41.7122410772158,9.71517829890361,11.8741536541735,8.99400439298628,16.5794904607885,18.34383831317,15.9596570988688,52.1581381919529,0.578397427679647,0,0.647067399789637,0,0,1.86391761218122,191.478641245552,161.483410953174,4.59822699375465,0,0,0,272.618963716777,223.26029417549,74.3873764508157,273.773304302835,280.519856691373,269.08551770463,259.586020908412,2.34230536855727,2.36373244159177,5.05445516867349,33.4602550859494,9.23855145035196,25.749035696549,28.2697543794398,28.3325057531144,41.8424469780666,48.6832137082429,45.7264415851477,74.7652741435755,1.07783996466421,0.945530400839096,0.703804496655795,0.43839146485515,0.278047249225598,0,0.205782136407943,2.7864797354589,0,0,0,0.621377317606506,0.234526059981096,0.36012412292203,0,0.393528463494808,0.308534225774757,0.697601834251224,0.268273401399619,0.467061369468678,0.16455984991348,0,0.243206428637567,0.146199987425332,0.439100230582101,0.268412837520744,206.504729489973,60.0962936295021,4.29544417878937,2.3800550999719,3.41261200856374,4.41249676534833,4.76809606891745,5.04208811558356,3.7804267453628,4.94586627892654,6.16887780007865,8.39964669092456,7.79139147280835,8.75408476981064,8.96834800747953,3.59527763461689,5.40345124686736,6.57166201739412,4.1726938209678,4.79843752960861,2.25415471346161,3.86937522906097,6.7883370508669,17.8144982521409,13.8488016302123,10.4803205065518,13.6588893221996,34.9213973898695,0,0,0.196558995113203,0,0.202860121388503,0,0,0,0.162135226775035,0.274561413188081,1.43768206527355,0.372140947668503,0.312037673114561,0,0,0,0.554259570499814,0.947457058852424,0.325929952884052,0.509235257325564,0,0.670025029767263,0.476087281772027,0.585400943573396,0.315270288212382,0.44292937929755,0.797273843287435,1.96635977658886,0.518054945597687,0.723245292907558,0,0,0,0,275.825913599027,259.272250741953,0,0.252470927204373,24.9251493338843,18.7410597262386,26.7125013188671,7.40803273652911,9.80314165962534,12.1722908239198,12.1443210502468,23.0882127749936,17.7879500075936,160.339336894482,2.55492153374884,1.78065603667255,2.93196526836437,1.15479086080775,21.2392221343941,7.04063844849446,11.1859716076958,9.05304382828311,16.2416041084425,23.3650712437385,20.6742634534577,31.627434464543,26.7373033788541,16.1178746547266,16.8669773719998,14.4389760547462,941.996389120731,17.2858650270058,23.0258457133303,41.1527107260657,84.0592707464377,72.4177399464406,100.210353546692,130.310998221048,0.23467170806371,3.38931313382112,5.07215315526412,0.16488625294148,0.484393280087717,0.120625849856312,0.119372344003136,0,5.53813589596716,206.192935835687,0.341741761595705,1.03193433981611,0,0,0.136694227721025,0,0,0,0,15.2747298882418,4.58687190692646,6.50622294805916,6.15630442684267,6.89991376847747,6.11415178489297,5.39457385539283,8.01738520535759,8.63794608547298,5.83267379813068,0,1.69107881605257,0.747582730219894,0.330916980914195,0.777804753376191,0.904118764344118,1.01373675294467,1.5256441023948,0.39061315453185,0.524296722128554,0.483168241652012,0.864090018773596,2.21207784439725,1.21635129174099,1.54066435747241,2.20865399062252,1.79026695667481,0.39736270956253,3.00488623799922,2.06765338044408,2.22126189885925,2.13379058634,1.61321896218945,2.63136277997332,2.50150788264857,3.03879945672079,0.906921534460845,0,0,0,2.89784391048286,6.38120416534019,0.73260649706906,1.07184189539533,0,306.09549869845,321.307015082009,285.874861206259,237.67295118132,334.320269648073,277.22956034202,299.03496760269,329.184799556905,342.122518783074,332.91988045642,4.67043064128795,11.1726964552289,13.3172212488225,11.1829089851415,9.22297915563122,7.35374033800057,14.2237905793034,15.4526292929171,15.0832028508153,14.6564382823003,15.4622372933046,13.9583492625696,12.735245015904,11.9727034997106,14.8183509905482,15.24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| |phase1_expression=34.7522998217403,32.1057375028212,55.0549079661339,0,0,28.0358384092856,95.54757000357,4.13194635013044,0,0,0,0,1.36960583944965,4.54586092578786,0,0,0,0,0.274228867211478,0,56.5537879504614,0,0,81.2761507790506,128.239788116548,68.3336037296874,99.5060211127463,98.4703533374513,2.85035129184561,1.76421090831952,90.9095093686749,0,0,0,0,0.498703936075477,0,0,0,0,0,0,0,0,0,0.183546752161682,0,120.349886322006,32.7332412274363,28.5811951639197,22.2578410384326,37.3756667348926,0,1.45072428402269,0.672187598284928,0.257259436035947,0,0,123.615357585214,143.885546361993,127.400112104742,0.677689064138264,0.889294796111139,0.449949858640699,0,0,33.2556122675429,70.3119498738445,50.3931515819201,56.8375000376418,58.6806642170356,244.517242649656,240.746709637259,66.634994772935,70.6381121404402,71.6990653555816,372.191677777934,509.600166297984,522.262213071228,134.260240909337,134.120885521133,118.768248486941,612.52749980903,530.122378649843,456.561164357109,153.796121617255,162.873202834174,132.530005981789,7.04253597998612,9.21973033302783,0.869593466105033,0,0.679971333707751,0.539703191637817,0,0,15.0275529540974,0,0,0,31.2672391904231,0,0,0,0,0.253359865475099,0,10.2765491747154,1.03575153458869,41.7122410772158,9.71517829890361,11.8741536541735,8.99400439298628,16.5794904607885,18.34383831317,15.9596570988688,52.1581381919529,0.578397427679647,0,0.647067399789637,0,0,1.86391761218122,191.478641245552,161.483410953174,4.59822699375465,0,0,0,272.618963716777,223.26029417549,74.3873764508157,273.773304302835,280.519856691373,269.08551770463,259.586020908412,2.34230536855727,2.36373244159177,5.05445516867349,33.4602550859494,9.23855145035196,25.749035696549,28.2697543794398,28.3325057531144,41.8424469780666,48.6832137082429,45.7264415851477,74.7652741435755,1.07783996466421,0.945530400839096,0.703804496655795,0.43839146485515,0.278047249225598,0,0.205782136407943,2.7864797354589,0,0,0,0.621377317606506,0.234526059981096,0.36012412292203,0,0.393528463494808,0.308534225774757,0.697601834251224,0.268273401399619,0.467061369468678,0.16455984991348,0,0.243206428637567,0.146199987425332,0.439100230582101,0.268412837520744,206.504729489973,60.0962936295021,4.29544417878937,2.3800550999719,3.41261200856374,4.41249676534833,4.76809606891745,5.04208811558356,3.7804267453628,4.94586627892654,6.16887780007865,8.39964669092456,7.79139147280835,8.75408476981064,8.96834800747953,3.59527763461689,5.40345124686736,6.57166201739412,4.1726938209678,4.79843752960861,2.25415471346161,3.86937522906097,6.7883370508669,17.8144982521409,13.8488016302123,10.4803205065518,13.6588893221996,34.9213973898695,0,0,0.196558995113203,0,0.202860121388503,0,0,0,0.162135226775035,0.274561413188081,1.43768206527355,0.372140947668503,0.312037673114561,0,0,0,0.554259570499814,0.947457058852424,0.325929952884052,0.509235257325564,0,0.670025029767263,0.476087281772027,0.585400943573396,0.315270288212382,0.44292937929755,0.797273843287435,1.96635977658886,0.518054945597687,0.723245292907558,0,0,0,0,275.825913599027,259.272250741953,0,0.252470927204373,24.9251493338843,18.7410597262386,26.7125013188671,7.40803273652911,9.80314165962534,12.1722908239198,12.1443210502468,23.0882127749936,17.7879500075936,160.339336894482,2.55492153374884,1.78065603667255,2.93196526836437,1.15479086080775,21.2392221343941,7.04063844849446,11.1859716076958,9.05304382828311,16.2416041084425,23.3650712437385,20.6742634534577,31.627434464543,26.7373033788541,16.1178746547266,16.8669773719998,14.4389760547462,941.996389120731,17.2858650270058,23.0258457133303,41.1527107260657,84.0592707464377,72.4177399464406,100.210353546692,130.310998221048,0.23467170806371,3.38931313382112,5.07215315526412,0.16488625294148,0.484393280087717,0.120625849856312,0.119372344003136,0,5.53813589596716,206.192935835687,0.341741761595705,1.03193433981611,0,0,0.136694227721025,0,0,0,0,15.2747298882418,4.58687190692646,6.50622294805916,6.15630442684267,6.89991376847747,6.11415178489297,5.39457385539283,8.01738520535759,8.63794608547298,5.83267379813068,0,1.69107881605257,0.747582730219894,0.330916980914195,0.777804753376191,0.904118764344118,1.01373675294467,1.5256441023948,0.39061315453185,0.524296722128554,0.483168241652012,0.864090018773596,2.21207784439725,1.21635129174099,1.54066435747241,2.20865399062252,1.79026695667481,0.39736270956253,3.00488623799922,2.06765338044408,2.22126189885925,2.13379058634,1.61321896218945,2.63136277997332,2.50150788264857,3.03879945672079,0.906921534460845,0,0,0,2.89784391048286,6.38120416534019,0.73260649706906,1.07184189539533,0,306.09549869845,321.307015082009,285.874861206259,237.67295118132,334.320269648073,277.22956034202,299.03496760269,329.184799556905,342.122518783074,332.91988045642,4.67043064128795,11.1726964552289,13.3172212488225,11.1829089851415,9.22297915563122,7.35374033800057,14.2237905793034,15.4526292929171,15.0832028508153,14.6564382823003,15.4622372933046,13.9583492625696,12.735245015904,11.9727034997106,14.8183509905482,15.24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| ||
|short_description=p1@Scg5 | |||
}} | }} |
Latest revision as of 23:34, 1 October 2015
Short description: | p1@Scg5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Scg5_5end |
Coexpression cluster: | MCL_coexpression_mm9:278 |
Association with transcript: | 22bp_to_NM_009162, uc008lpq.1_5end |
EntrezGene: | Scg5 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 5.64e-16 | 44 |
neurectodermal cell | 5.64e-16 | 44 |
neural cell | 1.16e-15 | 43 |
neuron | 2.07e-14 | 33 |
neuronal stem cell | 2.07e-14 | 33 |
neuroblast | 2.07e-14 | 33 |
electrically signaling cell | 2.07e-14 | 33 |
CNS neuron (sensu Vertebrata) | 1.31e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.31e-13 | 23 |
electrically responsive cell | 1.76e-09 | 39 |
electrically active cell | 1.76e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.14e-36 | 73 |
nervous system | 5.78e-36 | 75 |
neurectoderm | 5.23e-32 | 64 |
neural plate | 5.23e-32 | 64 |
presumptive neural plate | 5.23e-32 | 64 |
ectoderm-derived structure | 1.08e-31 | 95 |
ectoderm | 1.08e-31 | 95 |
presumptive ectoderm | 1.08e-31 | 95 |
regional part of nervous system | 5.61e-30 | 54 |
neural tube | 3.52e-28 | 52 |
neural rod | 3.52e-28 | 52 |
future spinal cord | 3.52e-28 | 52 |
neural keel | 3.52e-28 | 52 |
ecto-epithelium | 1.06e-25 | 73 |
pre-chordal neural plate | 4.68e-25 | 49 |
brain | 6.01e-25 | 47 |
future brain | 6.01e-25 | 47 |
regional part of brain | 2.47e-24 | 46 |
anterior neural tube | 2.17e-22 | 40 |
regional part of forebrain | 1.04e-21 | 39 |
forebrain | 1.04e-21 | 39 |
future forebrain | 1.04e-21 | 39 |
gray matter | 6.09e-20 | 34 |
structure with developmental contribution from neural crest | 4.48e-18 | 92 |
brain grey matter | 5.50e-17 | 29 |
regional part of telencephalon | 5.50e-17 | 29 |
telencephalon | 5.50e-17 | 29 |
cerebral cortex | 3.46e-12 | 21 |
cerebral hemisphere | 3.46e-12 | 21 |
pallium | 3.46e-12 | 21 |
regional part of cerebral cortex | 1.67e-10 | 17 |
occipital lobe | 4.96e-08 | 10 |
visual cortex | 4.96e-08 | 10 |
neocortex | 4.96e-08 | 10 |