FFCP PHASE1:Mm9::chr19:60019550..60019581,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=74998 | |EntrezGene=74998 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt=G3UW57,Q5HZI0 | |UniProt=G3UW57,Q5HZI0 | ||
|association_with_transcript=0bp_to_ENSMUST00000171986,NM_001164367,uc008ibm.1_5end | |association_with_transcript=0bp_to_ENSMUST00000171986,NM_001164367,uc008ibm.1_5end | ||
|cluster_id=chr19:60019550..60019581,- | |||
|description=CAGE_peak_1_at_Rab11fip2_5end | |description=CAGE_peak_1_at_Rab11fip2_5end | ||
|id=chr19:60019550..60019581,- | |id=chr19:60019550..60019581,- | ||
|ontology_enrichment_celltype=CL:0000117!2.19e-07!23;CL:0000337!2.19e-07!23 | |ontology_enrichment_celltype=CL:0000117!2.19e-07!23;CL:0000337!2.19e-07!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.18e-07,23;CL:0000337,2.18e-07,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003056!4.32e-15!49;UBERON:0000033!8.92e-15!63;UBERON:0002346!3.52e-14!71;UBERON:0003075!3.52e-14!71;UBERON:0007284!3.52e-14!71;UBERON:0000955!1.25e-13!50;UBERON:0006238!1.25e-13!50;UBERON:0001049!1.30e-13!52;UBERON:0005068!1.30e-13!52;UBERON:0006241!1.30e-13!52;UBERON:0007135!1.30e-13!52;UBERON:0002616!4.41e-13!49;UBERON:0003080!1.42e-12!40;UBERON:0002020!3.89e-12!34;UBERON:0000153!4.23e-12!94;UBERON:0002780!4.36e-12!39;UBERON:0001890!4.36e-12!39;UBERON:0006240!4.36e-12!39;UBERON:0007811!5.85e-11!86;UBERON:0002791!6.90e-11!29;UBERON:0003528!6.90e-11!29;UBERON:0001893!6.90e-11!29;UBERON:0004121!7.57e-11!102;UBERON:0000924!7.57e-11!102;UBERON:0006601!7.57e-11!102;UBERON:0001017!3.89e-10!73;UBERON:0005743!3.89e-10!73;UBERON:0000073!2.02e-09!75;UBERON:0001016!2.02e-09!75;UBERON:0000956!1.11e-08!21;UBERON:0001869!1.11e-08!21;UBERON:0000203!1.11e-08!21;UBERON:0002021!4.69e-08!10;UBERON:0000411!4.69e-08!10;UBERON:0001950!4.69e-08!10;UBERON:0002619!2.13e-07!17 | |ontology_enrichment_uberon=UBERON:0003056!4.32e-15!49;UBERON:0000033!8.92e-15!63;UBERON:0002346!3.52e-14!71;UBERON:0003075!3.52e-14!71;UBERON:0007284!3.52e-14!71;UBERON:0000955!1.25e-13!50;UBERON:0006238!1.25e-13!50;UBERON:0001049!1.30e-13!52;UBERON:0005068!1.30e-13!52;UBERON:0006241!1.30e-13!52;UBERON:0007135!1.30e-13!52;UBERON:0002616!4.41e-13!49;UBERON:0003080!1.42e-12!40;UBERON:0002020!3.89e-12!34;UBERON:0000153!4.23e-12!94;UBERON:0002780!4.36e-12!39;UBERON:0001890!4.36e-12!39;UBERON:0006240!4.36e-12!39;UBERON:0007811!5.85e-11!86;UBERON:0002791!6.90e-11!29;UBERON:0003528!6.90e-11!29;UBERON:0001893!6.90e-11!29;UBERON:0004121!7.57e-11!102;UBERON:0000924!7.57e-11!102;UBERON:0006601!7.57e-11!102;UBERON:0001017!3.89e-10!73;UBERON:0005743!3.89e-10!73;UBERON:0000073!2.02e-09!75;UBERON:0001016!2.02e-09!75;UBERON:0000956!1.11e-08!21;UBERON:0001869!1.11e-08!21;UBERON:0000203!1.11e-08!21;UBERON:0002021!4.69e-08!10;UBERON:0000411!4.69e-08!10;UBERON:0001950!4.69e-08!10;UBERON:0002619!2.13e-07!17 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,3.23e-15,64;UBERON:0003075,3.23e-15,64;UBERON:0007284,3.23e-15,64;UBERON:0010371,3.86e-15,73;UBERON:0003056,4.31e-15,49;UBERON:0000073,1.83e-14,54;UBERON:0001049,1.30e-13,52;UBERON:0005068,1.30e-13,52;UBERON:0006241,1.30e-13,52;UBERON:0007135,1.30e-13,52;UBERON:0003080,1.41e-12,40;UBERON:0000955,1.57e-12,47;UBERON:0006238,1.57e-12,47;UBERON:0002020,3.89e-12,34;UBERON:0002780,4.36e-12,39;UBERON:0001890,4.36e-12,39;UBERON:0006240,4.36e-12,39;UBERON:0002616,5.43e-12,46;UBERON:0004121,2.85e-11,95;UBERON:0000924,2.85e-11,95;UBERON:0006601,2.85e-11,95;UBERON:0003528,6.89e-11,29;UBERON:0002791,6.89e-11,29;UBERON:0001893,6.89e-11,29;UBERON:0010314,3.72e-10,92;UBERON:0001017,3.89e-10,73;UBERON:0001016,2.02e-09,75;UBERON:0000956,1.11e-08,21;UBERON:0001869,1.11e-08,21;UBERON:0000203,1.11e-08,21;UBERON:0002021,4.69e-08,10;UBERON:0000411,4.69e-08,10;UBERON:0001950,4.69e-08,10;UBERON:0002619,2.13e-07,17 | |||
|phase1_expression=6.40595388419176,1.04692622291808,0.909998478779072,0.90739263392049,1.50268718983904,3.18970616632591,1.86890112476421,4.13194635013044,1.83025338797167,2.34064526321993,2.22583358693156,3.11111420081812,5.64962408772979,4.54586092578786,5.66286595086627,6.07425802169478,11.8925519281785,9.62159604342625,10.6949258212476,4.2438965179803,20.2403030559546,3.17731043842833,3.39559725880616,1.59992422793407,1.14704640533585,0,2.15380998079537,1.07735616342945,1.71021077510736,1.26015064879965,0.221730510655305,1.27006134691926,0.61506478758457,0,3.17736781726402,1.16364251750945,2.6542016314108,3.76678467663217,1.5626706890476,3.66466620781659,0.588231488031014,2.04913645487534,2.91306211818692,4.65818226509636,5.5757312170733,5.68994931701213,2.34717403304412,3.2703773457067,1.09843091367236,2.72201858703997,2.2397827460058,2.87505128729943,4.02678254538567,8.70434570413613,5.37750078627942,3.8588915405392,3.43840127926508,4.12537673821954,12.3413041124355,13.2247744818008,13.3104594736298,1.69422266034566,2.66788438833342,1.7997994345628,0.988866362566974,0,2.09720077362883,1.53687322128622,11.6132365785495,8.50537411489651,11.3575479129746,7.9982275633065,6.62605622854841,14.9438775042244,11.5014565221884,9.19218786610021,8.8092704799511,16.2162919368188,14.1318010595744,13.3205150607496,12.2593442427229,14.5855743755893,4.74611098302348,8.4414391504752,12.6822545654752,19.7401152267357,14.6642831223076,16.0303523409758,4.24066682665831,4.45872204630035,5.79728977403356,0,0.679971333707751,1.61910957491345,4.54843492213368,5.37632264516803,5.47733238513832,4.4311883870295,3.63700406444016,3.5333957451034,8.30976176682415,8.98285341900225,10.1922095882658,14.2213340630666,3.030874574157,3.04031838570118,2.02209778005913,5.02409070763864,8.80388804400384,8.75808620482466,4.51061849591953,7.61163695780353,3.68984795609694,5.57673770044703,14.345822270556,5.78066320116507,6.17987419335935,8.82056077211461,5.30766331169925,6.14714029800155,3.3126227769059,4.363877278217,3.72783522436244,8.49064311333487,11.1006754611131,2.04365644166873,6.94927722134338,3.59941638596045,5.33694953706872,14.9790639404823,34.7700458142156,26.7643770000401,27.2904182701874,26.338692105024,24.103413168909,21.2536054618763,15.5814226690984,5.72272064806428,13.6470289554184,7.78634866779954,9.10843100738926,6.66716102857071,9.36323074987816,14.0155480587215,22.3159717216355,15.373646434182,14.0552586839593,11.9003550539947,7.97601573851516,9.07709184805532,9.67731182901719,10.0830036916684,9.73165372289593,7.3132954969655,6.79081050146213,10.5488161413801,2.1066395619397,5.1469581422943,3.12579849335152,7.04227626620706,5.39409937956521,6.30217215113552,5.68187365404505,4.9191057936851,6.78775296704464,6.97601834251224,3.48755421819505,9.80828875884224,6.41783414662574,5.58169377868924,6.56657357321431,3.94739966048397,5.48875288227627,7.1129401942997,32.1743621303115,19.2431625149262,0.660837565967596,2.3800550999719,5.97207101498655,7.43157349953403,7.86091514064769,6.6555563125703,4.44756087689741,3.04361001780095,1.42358718463353,4.11747386810027,8.54539709920916,8.75408476981064,7.60359939764569,3.59527763461689,2.80979464837102,1.7922714592893,3.60369011810855,7.65465034485183,11.270773567308,9.16430975303914,8.92181440971078,15.7104236554314,10.0546094027569,7.67572769493931,8.00693511991011,8.63780147452604,3.26097889795864,5.83957870006329,4.71741588271687,4.27238013531222,4.46292267054706,5.54707467430559,3.8193877767213,5.75392274901621,9.24170792617702,2.47105271869273,4.31304619582064,2.60498663367952,3.74445207737473,2.77836765741823,2.69096120282868,3.85954817090694,11.4546977903295,5.11626811780309,5.0519142697028,6.28056817368196,5.39787571063555,8.04030035720716,5.71304738126433,10.9274842800367,13.0837169608139,11.9590932410338,10.6834695000516,10.1595255123758,7.7708241839653,9.9807850421243,6.03165135757089,3.26343410291226,4.91764273019036,5.24279817978992,10.4357883492065,11.2523219128515,5.40985319743029,4.79694761688309,5.67914794949262,4.29482618726302,6.67812532971677,2.15071918157297,4.23317480756549,6.51076020814315,5.26253912177363,6.13737301613755,2.76701444562566,20.8858855674175,8.37446502728785,5.34196811001766,15.3113741792362,7.9185659026817,6.63725691699814,5.34117399540959,4.83717691143602,4.33791683438566,5.31543407185391,7.07100840271033,9.04499026088774,5.45300594216258,6.06045543254026,4.10847785316561,2.10837217149998,3.09406629744561,10.5536277783674,7.92268813737765,2.71653235943784,8.57348140126369,13.8325382240973,9.81028496811388,11.5184314421485,6.08929898229199,5.86679270159276,4.87213762986786,7.93902232997863,13.0260139823769,14.5317984026315,8.08193194037288,6.56547892017251,8.37118588699812,4.37221254944776,10.0129663085675,5.29699730473343,3.92135049130123,5.92622487583077,5.65105371014073,6.01454601972511,4.80434163733698,7.13909405974192,6.29781535456461,8.153798454461,2.86401185404534,7.27572785236611,5.69294507955176,6.37231510848627,6.48173717644853,6.98760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|phase1_expression=6.40595388419176,1.04692622291808,0.909998478779072,0.90739263392049,1.50268718983904,3.18970616632591,1.86890112476421,4.13194635013044,1.83025338797167,2.34064526321993,2.22583358693156,3.11111420081812,5.64962408772979,4.54586092578786,5.66286595086627,6.07425802169478,11.8925519281785,9.62159604342625,10.6949258212476,4.2438965179803,20.2403030559546,3.17731043842833,3.39559725880616,1.59992422793407,1.14704640533585,0,2.15380998079537,1.07735616342945,1.71021077510736,1.26015064879965,0.221730510655305,1.27006134691926,0.61506478758457,0,3.17736781726402,1.16364251750945,2.6542016314108,3.76678467663217,1.5626706890476,3.66466620781659,0.588231488031014,2.04913645487534,2.91306211818692,4.65818226509636,5.5757312170733,5.68994931701213,2.34717403304412,3.2703773457067,1.09843091367236,2.72201858703997,2.2397827460058,2.87505128729943,4.02678254538567,8.70434570413613,5.37750078627942,3.8588915405392,3.43840127926508,4.12537673821954,12.3413041124355,13.2247744818008,13.3104594736298,1.69422266034566,2.66788438833342,1.7997994345628,0.988866362566974,0,2.09720077362883,1.53687322128622,11.6132365785495,8.50537411489651,11.3575479129746,7.9982275633065,6.62605622854841,14.9438775042244,11.5014565221884,9.19218786610021,8.8092704799511,16.2162919368188,14.1318010595744,13.3205150607496,12.2593442427229,14.5855743755893,4.74611098302348,8.4414391504752,12.6822545654752,19.7401152267357,14.6642831223076,16.0303523409758,4.24066682665831,4.45872204630035,5.79728977403356,0,0.679971333707751,1.61910957491345,4.54843492213368,5.37632264516803,5.47733238513832,4.4311883870295,3.63700406444016,3.5333957451034,8.30976176682415,8.98285341900225,10.1922095882658,14.2213340630666,3.030874574157,3.04031838570118,2.02209778005913,5.02409070763864,8.80388804400384,8.75808620482466,4.51061849591953,7.61163695780353,3.68984795609694,5.57673770044703,14.345822270556,5.78066320116507,6.17987419335935,8.82056077211461,5.30766331169925,6.14714029800155,3.3126227769059,4.363877278217,3.72783522436244,8.49064311333487,11.1006754611131,2.04365644166873,6.94927722134338,3.59941638596045,5.33694953706872,14.9790639404823,34.7700458142156,26.7643770000401,27.2904182701874,26.338692105024,24.103413168909,21.2536054618763,15.5814226690984,5.72272064806428,13.6470289554184,7.78634866779954,9.10843100738926,6.66716102857071,9.36323074987816,14.0155480587215,22.3159717216355,15.373646434182,14.0552586839593,11.9003550539947,7.97601573851516,9.07709184805532,9.67731182901719,10.0830036916684,9.73165372289593,7.3132954969655,6.79081050146213,10.5488161413801,2.1066395619397,5.1469581422943,3.12579849335152,7.04227626620706,5.39409937956521,6.30217215113552,5.68187365404505,4.9191057936851,6.78775296704464,6.97601834251224,3.48755421819505,9.80828875884224,6.41783414662574,5.58169377868924,6.56657357321431,3.94739966048397,5.48875288227627,7.1129401942997,32.1743621303115,19.2431625149262,0.660837565967596,2.3800550999719,5.97207101498655,7.43157349953403,7.86091514064769,6.6555563125703,4.44756087689741,3.04361001780095,1.42358718463353,4.11747386810027,8.54539709920916,8.75408476981064,7.60359939764569,3.59527763461689,2.80979464837102,1.7922714592893,3.60369011810855,7.65465034485183,11.270773567308,9.16430975303914,8.92181440971078,15.7104236554314,10.0546094027569,7.67572769493931,8.00693511991011,8.63780147452604,3.26097889795864,5.83957870006329,4.71741588271687,4.27238013531222,4.46292267054706,5.54707467430559,3.8193877767213,5.75392274901621,9.24170792617702,2.47105271869273,4.31304619582064,2.60498663367952,3.74445207737473,2.77836765741823,2.69096120282868,3.85954817090694,11.4546977903295,5.11626811780309,5.0519142697028,6.28056817368196,5.39787571063555,8.04030035720716,5.71304738126433,10.9274842800367,13.0837169608139,11.9590932410338,10.6834695000516,10.1595255123758,7.7708241839653,9.9807850421243,6.03165135757089,3.26343410291226,4.91764273019036,5.24279817978992,10.4357883492065,11.2523219128515,5.40985319743029,4.79694761688309,5.67914794949262,4.29482618726302,6.67812532971677,2.15071918157297,4.23317480756549,6.51076020814315,5.26253912177363,6.13737301613755,2.76701444562566,20.8858855674175,8.37446502728785,5.34196811001766,15.3113741792362,7.9185659026817,6.63725691699814,5.34117399540959,4.83717691143602,4.33791683438566,5.31543407185391,7.07100840271033,9.04499026088774,5.45300594216258,6.06045543254026,4.10847785316561,2.10837217149998,3.09406629744561,10.5536277783674,7.92268813737765,2.71653235943784,8.57348140126369,13.8325382240973,9.81028496811388,11.5184314421485,6.08929898229199,5.86679270159276,4.87213762986786,7.93902232997863,13.0260139823769,14.5317984026315,8.08193194037288,6.56547892017251,8.37118588699812,4.37221254944776,10.0129663085675,5.29699730473343,3.92135049130123,5.92622487583077,5.65105371014073,6.01454601972511,4.80434163733698,7.13909405974192,6.29781535456461,8.153798454461,2.86401185404534,7.27572785236611,5.69294507955176,6.37231510848627,6.48173717644853,6.98760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| ||
|short_description=p1@Rab11fip2 | |short_description=p1@Rab11fip2 | ||
}} | }} |
Latest revision as of 02:13, 26 September 2015
Short description: | p1@Rab11fip2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rab11fip2_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000171986, NM_001164367, uc008ibm.1_5end |
EntrezGene: | Rab11fip2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.18e-07 | 23 |
neuroblast (sensu Vertebrata) | 2.18e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 3.23e-15 | 64 |
neural plate | 3.23e-15 | 64 |
presumptive neural plate | 3.23e-15 | 64 |
ecto-epithelium | 3.86e-15 | 73 |
pre-chordal neural plate | 4.31e-15 | 49 |
regional part of nervous system | 1.83e-14 | 54 |
neural tube | 1.30e-13 | 52 |
neural rod | 1.30e-13 | 52 |
future spinal cord | 1.30e-13 | 52 |
neural keel | 1.30e-13 | 52 |
anterior neural tube | 1.41e-12 | 40 |
brain | 1.57e-12 | 47 |
future brain | 1.57e-12 | 47 |
gray matter | 3.89e-12 | 34 |
regional part of forebrain | 4.36e-12 | 39 |
forebrain | 4.36e-12 | 39 |
future forebrain | 4.36e-12 | 39 |
regional part of brain | 5.43e-12 | 46 |
ectoderm-derived structure | 2.85e-11 | 95 |
ectoderm | 2.85e-11 | 95 |
presumptive ectoderm | 2.85e-11 | 95 |
brain grey matter | 6.89e-11 | 29 |
regional part of telencephalon | 6.89e-11 | 29 |
telencephalon | 6.89e-11 | 29 |
structure with developmental contribution from neural crest | 3.72e-10 | 92 |
central nervous system | 3.89e-10 | 73 |
nervous system | 2.02e-09 | 75 |
cerebral cortex | 1.11e-08 | 21 |
cerebral hemisphere | 1.11e-08 | 21 |
pallium | 1.11e-08 | 21 |
occipital lobe | 4.69e-08 | 10 |
visual cortex | 4.69e-08 | 10 |
neocortex | 4.69e-08 | 10 |
regional part of cerebral cortex | 2.13e-07 | 17 |