FFCP PHASE1:Mm9::chr2:57090062..57090140,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=14571 | |EntrezGene=14571 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2 | |||
|TSSclassifier=NA | |||
|UniProt=Q64521 | |UniProt=Q64521 | ||
|association_with_transcript=0bp_to_ENSMUST00000169687,NM_001145820,uc008jse.2_5end | |association_with_transcript=0bp_to_ENSMUST00000169687,NM_001145820,uc008jse.2_5end | ||
|cluster_id=chr2:57090062..57090140,+ | |||
|description=CAGE_peak_3_at_Gpd2_5end | |description=CAGE_peak_3_at_Gpd2_5end | ||
|id=chr2:57090062..57090140,+ | |id=chr2:57090062..57090140,+ | ||
|ontology_enrichment_celltype=CL:0000117!1.34e-12!23;CL:0000337!1.34e-12!23;CL:0000540!3.70e-12!33;CL:0000047!3.70e-12!33;CL:0000031!3.70e-12!33;CL:0000404!3.70e-12!33;CL:0000393!1.10e-09!39;CL:0000211!1.10e-09!39;CL:0002319!1.26e-07!43;CL:0000221!1.57e-07!44;CL:0000133!1.57e-07!44 | |ontology_enrichment_celltype=CL:0000117!1.34e-12!23;CL:0000337!1.34e-12!23;CL:0000540!3.70e-12!33;CL:0000047!3.70e-12!33;CL:0000031!3.70e-12!33;CL:0000404!3.70e-12!33;CL:0000393!1.10e-09!39;CL:0000211!1.10e-09!39;CL:0002319!1.26e-07!43;CL:0000221!1.57e-07!44;CL:0000133!1.57e-07!44 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.75e-13,23;CL:0000337,4.75e-13,23;CL:0000540,1.37e-12,33;CL:0000047,1.37e-12,33;CL:0000031,1.37e-12,33;CL:0000404,1.37e-12,33;CL:0000393,3.70e-10,39;CL:0000211,3.70e-10,39;CL:0002319,6.23e-08,43;CL:0000221,7.86e-08,44;CL:0000133,7.86e-08,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.13e-22!73;UBERON:0005743!9.13e-22!73;UBERON:0000073!4.66e-21!75;UBERON:0001016!4.66e-21!75;UBERON:0002346!2.49e-20!71;UBERON:0003075!2.49e-20!71;UBERON:0007284!2.49e-20!71;UBERON:0000153!5.37e-20!94;UBERON:0001049!1.05e-19!52;UBERON:0005068!1.05e-19!52;UBERON:0006241!1.05e-19!52;UBERON:0007135!1.05e-19!52;UBERON:0000955!1.22e-18!50;UBERON:0006238!1.22e-18!50;UBERON:0007811!2.85e-18!86;UBERON:0000033!4.34e-18!63;UBERON:0002616!5.12e-18!49;UBERON:0002020!7.73e-18!34;UBERON:0003056!4.76e-17!49;UBERON:0004121!2.18e-16!102;UBERON:0000924!2.18e-16!102;UBERON:0006601!2.18e-16!102;UBERON:0003080!1.39e-15!40;UBERON:0002780!5.39e-15!39;UBERON:0001890!5.39e-15!39;UBERON:0006240!5.39e-15!39;UBERON:0002791!6.23e-15!29;UBERON:0003528!6.23e-15!29;UBERON:0001893!6.23e-15!29;UBERON:0000956!8.39e-11!21;UBERON:0001869!8.39e-11!21;UBERON:0000203!8.39e-11!21;UBERON:0002619!1.11e-08!17;UBERON:0002021!5.18e-08!10;UBERON:0000411!5.18e-08!10;UBERON:0001950!5.18e-08!10 | |ontology_enrichment_uberon=UBERON:0001017!9.13e-22!73;UBERON:0005743!9.13e-22!73;UBERON:0000073!4.66e-21!75;UBERON:0001016!4.66e-21!75;UBERON:0002346!2.49e-20!71;UBERON:0003075!2.49e-20!71;UBERON:0007284!2.49e-20!71;UBERON:0000153!5.37e-20!94;UBERON:0001049!1.05e-19!52;UBERON:0005068!1.05e-19!52;UBERON:0006241!1.05e-19!52;UBERON:0007135!1.05e-19!52;UBERON:0000955!1.22e-18!50;UBERON:0006238!1.22e-18!50;UBERON:0007811!2.85e-18!86;UBERON:0000033!4.34e-18!63;UBERON:0002616!5.12e-18!49;UBERON:0002020!7.73e-18!34;UBERON:0003056!4.76e-17!49;UBERON:0004121!2.18e-16!102;UBERON:0000924!2.18e-16!102;UBERON:0006601!2.18e-16!102;UBERON:0003080!1.39e-15!40;UBERON:0002780!5.39e-15!39;UBERON:0001890!5.39e-15!39;UBERON:0006240!5.39e-15!39;UBERON:0002791!6.23e-15!29;UBERON:0003528!6.23e-15!29;UBERON:0001893!6.23e-15!29;UBERON:0000956!8.39e-11!21;UBERON:0001869!8.39e-11!21;UBERON:0000203!8.39e-11!21;UBERON:0002619!1.11e-08!17;UBERON:0002021!5.18e-08!10;UBERON:0000411!5.18e-08!10;UBERON:0001950!5.18e-08!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.23e-23,73;UBERON:0002346,4.24e-22,64;UBERON:0003075,4.24e-22,64;UBERON:0007284,4.24e-22,64;UBERON:0000073,5.52e-22,54;UBERON:0001016,6.19e-22,75;UBERON:0001049,1.24e-20,52;UBERON:0005068,1.24e-20,52;UBERON:0006241,1.24e-20,52;UBERON:0007135,1.24e-20,52;UBERON:0002020,1.93e-18,34;UBERON:0000955,1.04e-17,47;UBERON:0006238,1.04e-17,47;UBERON:0003056,2.23e-17,49;UBERON:0004121,2.26e-17,95;UBERON:0000924,2.26e-17,95;UBERON:0006601,2.26e-17,95;UBERON:0010314,4.21e-17,92;UBERON:0010371,4.41e-17,73;UBERON:0002616,4.48e-17,46;UBERON:0003080,4.20e-16,40;UBERON:0002780,1.72e-15,39;UBERON:0001890,1.72e-15,39;UBERON:0006240,1.72e-15,39;UBERON:0003528,2.04e-15,29;UBERON:0002791,2.04e-15,29;UBERON:0001893,2.04e-15,29;UBERON:0000956,4.03e-11,21;UBERON:0001869,4.03e-11,21;UBERON:0000203,4.03e-11,21;UBERON:0002619,6.49e-09,17;UBERON:0002021,2.82e-08,10;UBERON:0000411,2.82e-08,10;UBERON:0001950,2.82e-08,10 | |||
|phase1_expression=2.40223270657191,0.348975407639361,0,0,0,0.16787927191189,0,0.903863264091034,1.54867594366833,3.27690336850791,1.88339765048055,3.19088635981346,0.684802919724823,0.699363219351979,0.333109761815663,0.404950534779652,0,0.788655413395594,1.09691546884591,0.42438965179803,3.48677489619386,1.48936426801328,1.30599894569468,0.159992422793407,0.91763712426868,2.29692785646008,0,0,0,0,0.221730510655305,0.635030673459631,0,0,0.577703239502549,0.498703936075477,0,0.418531630736908,0.7813353445238,1.0470474879476,0.588231488031014,0.683045484958446,0.485510353031154,0.881277725829041,2.73717714292689,3.48738829107195,0,1.74420125104357,0.439372365468944,1.1665793944457,2.79972843250725,1.43752564364972,0.503347818173209,0.725362142011344,1.68046899571232,0,1.71920063963254,0,5.66486090406874,6.34789175126439,4.43681982454325,1.0165335962074,0.889294796111139,0.449949858640699,0,0,0.299600110518405,0,7.05089363697648,9.45041568321835,5.67877395648731,8.85518051651791,6.84692476950002,6.00204916153275,5.84657373211242,5.51531271966013,6.60695285996332,14.1732945274558,9.5236050618871,7.78129097608144,8.41686321142169,7.29278718779464,3.62937898701795,9.00420176050688,12.835052813252,13.8475435172624,11.2473627831291,11.9295645328192,1.66597625333005,0.982430281388212,1.15945795480671,0,0,0,0,0,1.54488862144927,0.681721290312231,0.779358013808606,0.70667914902068,1.83096445709685,0,0,0,0.432982082022428,0,1.01104889002957,0.91347103775248,1.29468941823586,1.7813056687779,3.46970653532272,1.52232739156071,1.84492397804847,1.80867168663147,1.99900802130698,1.38233250462643,0.494389935468748,0.86759614151947,0,1.45590164952668,1.32504911076236,1.45462575940567,1.86391761218122,9.07620470735796,10.6817820474862,0,0.718890747035522,0.599902730993408,1.27070227073065,11.3840885947665,14.640019290196,10.6806199295935,29.8977830730716,33.243009452943,7.68815764870372,15.5751612545047,2.24046600470696,0.870848794270651,1.0108910337347,0.841767423545896,4.42409506073193,5.74755261083682,3.06105620669094,4.21973489940002,3.33378845841506,3.97152532883034,4.40398105430725,2.06962696591213,3.01795190105979,4.16033376369202,6.33424046990216,4.82230611340665,4.44875598760957,1.74126083261083,2.67516777330327,2.58744546864041,2.1066395619397,0.51469581422943,0.284163499395593,2.89976081549703,5.15957331958412,4.32148947506436,3.07768156260773,3.34499193970586,3.23960937063494,2.09280550275367,1.87791380979733,1.28441876603886,1.31647879930784,1.97000956894914,1.05389452409612,0.877199924551994,0.658650345873152,0.536825675041487,39.3242203814918,18.9344486777883,0,0.528901133327089,4.90562976231038,3.48355007790658,2.31961430379768,1.00841762311671,1.55664630691409,0.951128130562796,0,0.329397909448022,1.00534083520108,1.59165177632921,1.36474860983384,0.898819408654221,0.648414149624083,0.398282546508734,0.948339504765408,2.97046132785295,1.1270773567308,2.03651327845314,2.52138233317913,1.40271639780637,2.08680572510049,1.03327103585722,1.41298855057237,0.740382983530803,0,1.83529616287703,1.37591296579242,0.224862112384854,0.202860121388503,0.482354319504834,0.50925170356284,0.287696137450811,0,0.823684239564244,0,0.744281895337007,0.624075346229121,0,0.358794827043824,0,0.739012760666419,3.22135400009824,1.62964976442026,1.86719594352707,2.34690248288502,2.51259386162724,0.714130922658041,2.53673742215138,3.4679731703362,3.32197034473162,3.02964060449226,0.655453258862952,1.20879487306127,0.578596234326046,0,0,0,0.275936746304732,5.9403718295483,6.91548950893999,2.62295912602681,0,1.26203287766503,2.73307121007647,4.09304455692318,2.38968797952552,1.55959071857676,4.24614796183249,2.83367491172426,3.21481443702443,2.76701444562566,12.8528526568723,1.98716119291576,3.73937767701236,3.4206261464251,1.97964147567043,0,4.37005145078967,2.41858845571801,1.13163047853539,0.885905678642318,1.84461088766356,1.03371317267288,1.81766864738753,0.356497378384721,0,0,0,1.02131881726136,3.42116078659489,2.8458910432206,2.57204442037911,2.12808280370728,1.96205699362278,2.46823530903181,2.43571959291679,1.17335854031855,0.42366414172764,0.220528398054962,0.32977250588296,0.322928853391811,1.14594557363496,0.835606408021955,1.14898629821543,0.291480836629851,5.7481843623258,0.512612642393558,2.06386867963222,1.85194527369712,0.941842285023455,1.23024804948923,0.228778173206523,3.39956859987711,3.91864066506242,1.65839968565309,0,4.27053591334533,1.21991680276109,2.37611749807963,1.88179466413022,1.52853794622324,2.15782954215713,1.65306911450672,1.04702376793612,0.129614973291793,0,0,1.04661582230785,1.32366792365678,2.91676782516071,3.22899558694328,2.53434188236167,2.11243029562357,3.25510962109875,1.57289016638566,0.966336483304024,0,6.00421129193539,1.62180172232131,2.67048488628551,4.15746633528944,4.29664069601955,3.9736270956253,4.08664528367894,3.69223817936443,3.23092639834072,2.81965184623499,3.42809029465258,5.75001496364539,3.46362629905186,3.85693777199178,0.226730383615211,1.33191572024439,0.986852422704233,0.503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| ||
|short_description=p3@Gpd2 | |short_description=p3@Gpd2 | ||
}} | }} |
Latest revision as of 19:01, 26 September 2015
Short description: | p3@Gpd2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Gpd2_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 0bp_to_ENSMUST00000169687, NM_001145820, uc008jse.2_5end |
EntrezGene: | Gpd2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.75e-13 | 23 |
neuroblast (sensu Vertebrata) | 4.75e-13 | 23 |
neuron | 1.37e-12 | 33 |
neuronal stem cell | 1.37e-12 | 33 |
neuroblast | 1.37e-12 | 33 |
electrically signaling cell | 1.37e-12 | 33 |
electrically responsive cell | 3.70e-10 | 39 |
electrically active cell | 3.70e-10 | 39 |
neural cell | 6.23e-08 | 43 |
ectodermal cell | 7.86e-08 | 44 |
neurectodermal cell | 7.86e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.23e-23 | 73 |
neurectoderm | 4.24e-22 | 64 |
neural plate | 4.24e-22 | 64 |
presumptive neural plate | 4.24e-22 | 64 |
regional part of nervous system | 5.52e-22 | 54 |
nervous system | 6.19e-22 | 75 |
neural tube | 1.24e-20 | 52 |
neural rod | 1.24e-20 | 52 |
future spinal cord | 1.24e-20 | 52 |
neural keel | 1.24e-20 | 52 |
gray matter | 1.93e-18 | 34 |
brain | 1.04e-17 | 47 |
future brain | 1.04e-17 | 47 |
pre-chordal neural plate | 2.23e-17 | 49 |
ectoderm-derived structure | 2.26e-17 | 95 |
ectoderm | 2.26e-17 | 95 |
presumptive ectoderm | 2.26e-17 | 95 |
structure with developmental contribution from neural crest | 4.21e-17 | 92 |
ecto-epithelium | 4.41e-17 | 73 |
regional part of brain | 4.48e-17 | 46 |
anterior neural tube | 4.20e-16 | 40 |
regional part of forebrain | 1.72e-15 | 39 |
forebrain | 1.72e-15 | 39 |
future forebrain | 1.72e-15 | 39 |
brain grey matter | 2.04e-15 | 29 |
regional part of telencephalon | 2.04e-15 | 29 |
telencephalon | 2.04e-15 | 29 |
cerebral cortex | 4.03e-11 | 21 |
cerebral hemisphere | 4.03e-11 | 21 |
pallium | 4.03e-11 | 21 |
regional part of cerebral cortex | 6.49e-09 | 17 |
occipital lobe | 2.82e-08 | 10 |
visual cortex | 2.82e-08 | 10 |
neocortex | 2.82e-08 | 10 |