FFCP PHASE1:Hg19::chr14:60194331..60194336,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6252 | |EntrezGene=6252 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10467 | |HGNC=10467 | ||
|TSSclassifier=strong | |||
|UniProt=Q16799 | |UniProt=Q16799 | ||
|association_with_transcript=94bp_to_ENST00000432103,uc001xem.1_5end | |association_with_transcript=94bp_to_ENST00000432103,uc001xem.1_5end | ||
|cluster_id=chr14:60194331..60194336,- | |||
|coexpression_cluster_id=C89 | |||
|description=CAGE_peak_36_at_RTN1_5end | |description=CAGE_peak_36_at_RTN1_5end | ||
|id=chr14:60194331..60194336,- | |id=chr14:60194331..60194336,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000082;6.95e-12;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000082,6.95e-12,19 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.67e-08;29!UBERON:0001041;4.53e-08;30 | |||
|ontology_enrichment_disease=DOID:3905!2.36e-07!9 | |ontology_enrichment_disease=DOID:3905!2.36e-07!9 | ||
|ontology_enrichment_disease_v019=DOID:5409;3.10e-50;4!DOID:1325;1.78e-29;7!DOID:3904;1.78e-29;7!DOID:3905;2.62e-23;9!DOID:1324;1.22e-14;15!DOID:0050615;8.02e-14;16 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,3.10e-50,4;DOID:1325,1.78e-29,7;DOID:3904,1.78e-29,7;DOID:3905,2.62e-23,9;DOID:1324,1.22e-14,15;DOID:0050615,8.02e-14,16 | |||
|ontology_enrichment_uberon=UBERON:0001869!8.64e-27!32;UBERON:0000349!2.56e-26!5;UBERON:0001893!3.16e-25!34;UBERON:0001049!2.53e-23!57;UBERON:0005068!2.53e-23!57;UBERON:0006241!2.53e-23!57;UBERON:0007135!2.53e-23!57;UBERON:0002616!1.62e-22!59;UBERON:0002619!4.10e-22!22;UBERON:0002780!6.33e-21!41;UBERON:0001890!6.33e-21!41;UBERON:0006240!6.33e-21!41;UBERON:0003080!2.00e-20!42;UBERON:0002791!5.07e-20!33;UBERON:0000956!1.53e-19!25;UBERON:0000203!1.53e-19!25;UBERON:0002020!1.94e-19!34;UBERON:0003528!1.94e-19!34;UBERON:0000955!6.99e-19!69;UBERON:0006238!6.99e-19!69;UBERON:0001950!5.32e-17!20;UBERON:0000073!1.59e-16!94;UBERON:0001016!1.59e-16!94;UBERON:0001017!8.27e-16!82;UBERON:0002022!9.99e-16!1;UBERON:0003112!1.54e-15!1;UBERON:0000032!1.54e-15!1;UBERON:0005253!1.54e-15!1;UBERON:0003128!1.54e-15!1;UBERON:0002241!1.54e-15!1;UBERON:0001703!1.54e-15!1;UBERON:0004761!1.54e-15!1;UBERON:0009617!1.54e-15!1;UBERON:0007190!2.75e-15!1;UBERON:0003075!3.14e-15!86;UBERON:0007284!3.14e-15!86;UBERON:0001882!3.17e-15!1;UBERON:0005403!3.17e-15!1;UBERON:0005743!4.80e-15!86;UBERON:0002346!1.62e-14!90;UBERON:0003056!5.74e-14!61;UBERON:0007023!9.77e-14!115;UBERON:0000033!1.52e-12!123;UBERON:0000153!6.47e-12!129;UBERON:0007811!6.47e-12!129;UBERON:0000025!3.23e-09!194;UBERON:0004121!8.49e-09!169;UBERON:0001876!1.29e-08!2;UBERON:0001954!1.39e-08!2;UBERON:0003022!1.39e-08!2;UBERON:0002421!1.39e-08!2;UBERON:0002600!1.39e-08!2;UBERON:0000924!1.44e-08!173;UBERON:0006601!1.44e-08!173;UBERON:0001870!2.31e-08!2;UBERON:0001871!4.04e-08!7;UBERON:0000064!5.18e-08!219;UBERON:0002298!6.62e-08!8;UBERON:0002420!2.95e-07!9;UBERON:0007245!2.95e-07!9;UBERON:0010009!2.95e-07!9;UBERON:0010011!2.95e-07!9;UBERON:0000454!2.95e-07!9;UBERON:0004111!3.74e-07!241;UBERON:0000477!5.36e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0004802;6.95e-12;19!UBERON:0000115;6.95e-12;19!UBERON:0002048;1.80e-10;22!UBERON:0004807;1.80e-10;22!UBERON:0000117;1.80e-10;22!UBERON:0000171;1.80e-10;22!UBERON:0000170;1.80e-10;22!UBERON:0005911;4.53e-08;36!UBERON:0005178;2.32e-07;34!UBERON:0000072;2.32e-07;37!UBERON:0005181;2.32e-07;35!UBERON:0002224;2.32e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004802,6.95e-12,19;UBERON:0000115,6.95e-12,19;UBERON:0002048,1.80e-10,22;UBERON:0000117,1.80e-10,22;UBERON:0000171,1.80e-10,22;UBERON:0000170,1.80e-10,22;UBERON:0005597,1.80e-10,22;UBERON:0000118,1.80e-10,22;UBERON:0004807,1.52e-08,28;UBERON:0005178,2.74e-07,34;UBERON:0002224,2.74e-07,34;UBERON:0005181,4.03e-07,35;UBERON:0005153,8.21e-07,37 | |||
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|short_description=p36@RTN1 | |short_description=p36@RTN1 | ||
}} | }} |
Latest revision as of 20:02, 24 September 2015
Short description: | p36@RTN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_36_at_RTN1_5end |
Coexpression cluster: | C89_small_retinoblastoma_medulloblastoma_iPS_acantholytic_eye_bronchogenic |
Association with transcript: | 94bp_to_ENST00000432103, uc001xem.1_5end |
EntrezGene: | RTN1 |
HGNC: | 10467 |
UniProt: | Q16799 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of lung | 6.95e-12 | 19 |
Ontology term | p-value | n |
---|---|---|
respiratory tract epithelium | 6.95e-12 | 19 |
lung epithelium | 6.95e-12 | 19 |
lung | 1.80e-10 | 22 |
respiratory tube | 1.80e-10 | 22 |
respiration organ | 1.80e-10 | 22 |
pair of lungs | 1.80e-10 | 22 |
lung primordium | 1.80e-10 | 22 |
lung bud | 1.80e-10 | 22 |
respiratory system epithelium | 1.52e-08 | 28 |
thoracic cavity element | 2.74e-07 | 34 |
thoracic cavity | 2.74e-07 | 34 |
thoracic segment organ | 4.03e-07 | 35 |
epithelial bud | 8.21e-07 | 37 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 3.10e-50 | 4 |
bronchus cancer | 1.78e-29 | 7 |
bronchogenic carcinoma | 1.78e-29 | 7 |
lung carcinoma | 2.62e-23 | 9 |
lung cancer | 1.22e-14 | 15 |
respiratory system cancer | 8.02e-14 | 16 |