FFCP PHASE1:Hg19::chr2:216257849..216257907,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2335 | |EntrezGene=2335 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3778 | |HGNC=3778 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000456923_5end | |association_with_transcript=0bp_to_ENST00000456923_5end | ||
|cluster_id=chr2:216257849..216257907,- | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_39_at_FN1_5end | |description=CAGE_peak_39_at_FN1_5end | ||
|id=chr2:216257849..216257907,- | |id=chr2:216257849..216257907,- | ||
|ontology_enrichment_celltype=CL:0000055!1.18e-37!180;CL:0000057!4.10e-23!75;CL:0000183!3.36e-17!59;CL:0000680!1.68e-16!57;CL:0000056!1.68e-16!57;CL:0000355!1.68e-16!57;CL:0000187!7.66e-16!54;CL:0002371!1.73e-14!591;CL:0000393!1.34e-13!60;CL:0000211!1.34e-13!60;CL:0000144!7.18e-13!625;CL:0002620!9.63e-10!23;CL:0000192!1.04e-09!42;CL:0000514!1.04e-09!42;CL:0000048!1.14e-08!430;CL:0002494!1.72e-08!16;CL:0000220!4.26e-08!246;CL:0000723!5.42e-08!436;CL:0002321!6.07e-08!248;CL:0000034!6.82e-08!444;CL:0000548!1.24e-07!679;CL:0000004!1.24e-07!679;CL:0000255!1.24e-07!679;CL:0000359!1.62e-07!32;CL:0000012!3.39e-07!682;CL:0000499!7.37e-07!27 | |ontology_enrichment_celltype=CL:0000055!1.18e-37!180;CL:0000057!4.10e-23!75;CL:0000183!3.36e-17!59;CL:0000680!1.68e-16!57;CL:0000056!1.68e-16!57;CL:0000355!1.68e-16!57;CL:0000187!7.66e-16!54;CL:0002371!1.73e-14!591;CL:0000393!1.34e-13!60;CL:0000211!1.34e-13!60;CL:0000144!7.18e-13!625;CL:0002620!9.63e-10!23;CL:0000192!1.04e-09!42;CL:0000514!1.04e-09!42;CL:0000048!1.14e-08!430;CL:0002494!1.72e-08!16;CL:0000220!4.26e-08!246;CL:0000723!5.42e-08!436;CL:0002321!6.07e-08!248;CL:0000034!6.82e-08!444;CL:0000548!1.24e-07!679;CL:0000004!1.24e-07!679;CL:0000255!1.24e-07!679;CL:0000359!1.62e-07!32;CL:0000012!3.39e-07!682;CL:0000499!7.37e-07!27 | ||
|ontology_enrichment_celltype_v019=CL:0000134;1.21e-13;55!CL:0000723;6.25e-13;61!CL:0000048;4.47e-11;58!CL:0000057;2.22e-10;73!CL:0000034;4.03e-10;69!CL:0002320;1.34e-09;188!CL:0002620;1.49e-09;23!CL:0000187;1.83e-09;55!CL:0002494;2.08e-09;16!CL:0000349;4.41e-09;19!CL:0000499;1.12e-08;28!CL:0000188;8.34e-08;9!CL:0000393;1.99e-07;61!CL:0000211;1.99e-07;61!CL:0000327;8.80e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.09e-25,76;CL:0000048,2.60e-17,427;CL:0000723,2.58e-16,433;CL:0000034,2.97e-16,441;CL:0000680,5.08e-16,58;CL:0000056,5.08e-16,58;CL:0000355,5.08e-16,58;CL:0000187,9.32e-16,55;CL:0000393,9.57e-13,61;CL:0000211,9.57e-13,61;CL:0002620,1.24e-09,23;CL:0002320,1.68e-09,361;CL:0002494,2.48e-09,16;CL:0000349,3.27e-09,19;CL:0000192,9.76e-09,43;CL:0000514,9.76e-09,43;CL:0000499,1.32e-08,28;CL:0000188,8.83e-08,9;CL:0000134,1.02e-07,354;CL:0000219,1.83e-07,386;CL:0000327,9.62e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000355;3.95e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;9.06e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,7.59e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!7.46e-20!83;UBERON:0002329!7.46e-20!83;UBERON:0003077!7.46e-20!83;UBERON:0003059!7.46e-20!83;UBERON:0007282!7.46e-20!83;UBERON:0009618!7.46e-20!83;UBERON:0007285!7.46e-20!83;UBERON:0004290!8.13e-18!70;UBERON:0005256!4.12e-17!143;UBERON:0000486!1.23e-15!82;UBERON:0001134!1.25e-14!61;UBERON:0002036!1.25e-14!61;UBERON:0003082!1.25e-14!61;UBERON:0002385!2.90e-14!63;UBERON:0001015!2.90e-14!63;UBERON:0000383!2.90e-14!63;UBERON:0003102!2.93e-10!95;UBERON:0002100!6.01e-10!216;UBERON:0002199!3.28e-09!45;UBERON:0002416!3.28e-09!45;UBERON:0000490!6.98e-09!138;UBERON:0004872!3.51e-08!84;UBERON:0003914!4.02e-08!118;UBERON:0000475!8.53e-08!365;UBERON:0005631!9.22e-08!14;UBERON:0000158!9.22e-08!14;UBERON:0000468!9.75e-08!659;UBERON:0002097!1.07e-07!40;UBERON:0001637!2.18e-07!42;UBERON:0003509!2.18e-07!42;UBERON:0004572!2.18e-07!42;UBERON:0004923!5.90e-07!57;UBERON:0003104!9.65e-07!238;UBERON:0009142!9.65e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;4.78e-09;198!UBERON:0002385;4.06e-07;31!UBERON:0001015;4.06e-07;31!UBERON:0000383;4.06e-07;31!UBERON:0000478;4.62e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,9.98e-18,78;UBERON:0007524,2.88e-17,73;UBERON:0002329,3.46e-17,71;UBERON:0003059,3.46e-17,71;UBERON:0007282,3.46e-17,71;UBERON:0004290,3.46e-17,71;UBERON:0009618,3.46e-17,71;UBERON:0003077,1.08e-16,72;UBERON:0007285,1.08e-16,72;UBERON:0000486,3.48e-14,83;UBERON:0001134,5.60e-14,62;UBERON:0002036,5.60e-14,62;UBERON:0003082,5.60e-14,62;UBERON:0005256,8.69e-14,122;UBERON:0002385,8.70e-14,64;UBERON:0001015,8.70e-14,64;UBERON:0000383,8.70e-14,64;UBERON:0003104,7.25e-12,160;UBERON:0009142,7.25e-12,160;UBERON:0002384,5.70e-10,371;UBERON:0000490,2.17e-09,148;UBERON:0000926,5.98e-09,315;UBERON:0004120,5.98e-09,315;UBERON:0006603,5.98e-09,315;UBERON:0002199,2.51e-08,46;UBERON:0002416,2.51e-08,46;UBERON:0003102,3.88e-08,99;UBERON:0005631,1.24e-07,14;UBERON:0000158,1.24e-07,14;UBERON:0000478,3.65e-07,24;UBERON:0002097,5.90e-07,41;UBERON:0004872,7.44e-07,83 | |||
|phase1_expression=0.726713517082227,2.5692062866918,0.563817616383885,3.00219895059391,1.78784437770915,2.61701557230111,5.06599756336621,1.89515962028049,0.261185628199839,1.96587149201207,0,10.4851858622483,17.9361545195348,3.83675694176145,4.30816588446291,5.3786011716142,6.62963980826375,4.38186054232424,8.78279037822912,1.23121058076788,2.44800829493104,2.5076377718247,1.14494394852423,0.684372125364421,2.88748071068046,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,34.1329612839546,10.7312137552582,5.62595272111533,2.53007406669196,3.00802746381534,1.73815822752988,16.7010048880731,58.8828193066189,1.60709189178915,5.09977614163897,4.47957407034943,0,0,0,0,0,0,0,0,0,0,0,0.694281003215189,0.56530794192401,0.838998872419812,1.37559020970034,0.417989933073621,0,0,0,0,0,0,0,1.62028389576352,0,0,0.112611480483322,0,0,0.183201743930407,0,0,0,14.9091585508596,8.737505304856,8.87141511448566,30.9783550408719,9.930714701554,2.80338800071154,14.9448594021587,14.0600502597781,5.60179863719579,4.58016285036939,6.21155231831143,12.7140239221742,19.58998143232,1.40592859100278,9.67696238173994,0.570471821544449,9.11636951365987,3.05329696473789,3.23745888736263,1.82586048712923,1.02077085627447,5.03620700978249,1.54988671763648,0,6.18167323196392,1.82032272387605,2.87447256726495,3.19838616512726,7.00663711282999,0.831192346452549,2.19488810440419,4.90380473278431,4.20666564938471,3.17610112848059,14.7099501264867,5.97960688691989,18.2261434997223,8.10245959427886,4.74041634496819,6.69865404118636,0.930584281657949,6.75105328965065,3.89748020644795,15.6508940031351,3.77404584433427,6.7891343863901,12.7803453305981,3.32481924151213,3.05209066158878,0.57978255948989,0.545492241181669,0.286804595389004,0.243947412259191,0,2.44007280025989,1.24393266018445,2.27088765788066,0.36497735907583,1.56449532329816,6.43240938192885,6.90674606762403,1.39310378409594,3.60939740834793,0,0,0,0,0,0,0,0,0,0,0,6.9967581926338,4.41026134156626,0,0,0.590789906681404,0,1.35287282397425,0.686271241194102,0.548751427043128,0,0,0,3.25808305310325,2.07986957055916,2.88662684050547,0.115930404975077,9.51010423310155,0.144366447761074,0.462985512576611,0,0,0,0,0,0,0,1.00789276919316,0,5.1943943167652,0.581267877027924,4.98397482914775,0,0,0,0,0,0,0,0,1.71072446022705,0.616964956219941,0,0,1.34557301214433,6.10344096366592,5.06034172164555,1.80980402060889,10.7296933755565,4.22651376278,0.797814349754612,3.12022310734098,4.8869401109807,5.67396528093113,3.46348832720929,3.14551586047925,1.62786481617433,1.64648067356154,2.28015329005615,1.77695974371273,2.37585561880029,0.301439377059586,0.871533458600294,0.899756920638513,0,0,0,5.75099653179798,6.89171615004683,1.42636905040718,2.75084482668401,3.90405012845728,0.537182889719687,0,0,0,0,0.254094624222463,0,0,0.335032530668698,0,0,0,0,5.88919160251872,9.50323990013386,7.05289061619313,13.5181059995025,28.3702092187487,7.41201350659493,4.91993942969395,1.20378439891088,0,2.0694614258501,3.98535359121262,8.11224341583494,4.08352987999989,2.74121620447837,3.77457766191941,0,0,0,1.5156378572313,6.65741758041988,15.4219049598137,1.98486246255021,1.2276957863045,5.05188169979532,0.896974044789907,1.02341449813341,4.66476371316462,2.96836132889982,11.4115173413965,7.10246901252508,3.28508624055237,1.55776328755086,2.78904908303902,2.53804844142407,12.4314011588037,0.0920809889358963,2.41110341145674,3.82391452814106,3.93373244878272,0,0.462092022626489,0,0,0.844413031143006,1.13733384070897,0.510281115829547,2.15915916102139,1.54227252690289,2.70946437543853,4.51520796469368,0,0,0.671624264166535,0,0,0,0.984043937099117,0.325378394664303,0.721287081534056,0.0915694648183434,0.330037999682352,0.574265537996172,1.30012049207304,0,8.21701105483037,6.31599330170042,10.2847462066507,5.92697261683481,22.0211501979961,18.9971869027639,11.5908213285897,6.14321045962488,4.62797763010739,2.69066094311149,1.27612712494584,1.92199783625545,3.253918845081,27.3886741742657,0,0.308033580176089,1.06461206063404,0,2.03856641014312,0.286249773483982,2.60510858551767,7.59310619324942,2.47819252100972,0.255897791311334,4.70732886837312,1.27281299170375,7.8494864019923,2.51821440616641,2.47083326762449,1.7671860351853,2.02182481573316,1.58510321173008,0.842516912477962,1.95053495635836,2.43713489631284,0,1.9109987597118,5.23200098228737,7.910568163417,0.551365343546124,9.95158462861829,0.876901770507525,2.31510213706675,7.87073702455959,2.23201414658974,2.16876448669825,0.563391205064483,2.72481569187698,3.34046739444612,4.280052617775,0.354761064070598,2.32218398827431,5.26871828735843,0,1.04980416073495,0.0962221127255121,0.670302275535787,0,0.282431402330337,0,0,0,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.6084356300483,0.593929361665277,3.07160702099232,0,0,31.7229809315282,0,0,1.19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| ||
|short_description=p39@FN1 | |short_description=p39@FN1 | ||
}} | }} |
Latest revision as of 03:10, 20 September 2015
Short description: | p39@FN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_39_at_FN1_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000456923_5end |
EntrezGene: | FN1 |
HGNC: | 3778 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.09e-25 | 76 |
multi fate stem cell | 2.60e-17 | 427 |
somatic stem cell | 2.58e-16 | 433 |
stem cell | 2.97e-16 | 441 |
muscle precursor cell | 5.08e-16 | 58 |
myoblast | 5.08e-16 | 58 |
multi-potent skeletal muscle stem cell | 5.08e-16 | 58 |
muscle cell | 9.32e-16 | 55 |
electrically responsive cell | 9.57e-13 | 61 |
electrically active cell | 9.57e-13 | 61 |
skin fibroblast | 1.24e-09 | 23 |
connective tissue cell | 1.68e-09 | 361 |
cardiocyte | 2.48e-09 | 16 |
extraembryonic cell | 3.27e-09 | 19 |
smooth muscle cell | 9.76e-09 | 43 |
smooth muscle myoblast | 9.76e-09 | 43 |
stromal cell | 1.32e-08 | 28 |
cell of skeletal muscle | 8.83e-08 | 9 |
mesenchymal cell | 1.02e-07 | 354 |
motile cell | 1.83e-07 | 386 |
extracellular matrix secreting cell | 9.62e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 9.98e-18 | 78 |
dense mesenchyme tissue | 2.88e-17 | 73 |
somite | 3.46e-17 | 71 |
presomitic mesoderm | 3.46e-17 | 71 |
presumptive segmental plate | 3.46e-17 | 71 |
dermomyotome | 3.46e-17 | 71 |
trunk paraxial mesoderm | 3.46e-17 | 71 |
paraxial mesoderm | 1.08e-16 | 72 |
presumptive paraxial mesoderm | 1.08e-16 | 72 |
multilaminar epithelium | 3.48e-14 | 83 |
skeletal muscle tissue | 5.60e-14 | 62 |
striated muscle tissue | 5.60e-14 | 62 |
myotome | 5.60e-14 | 62 |
trunk mesenchyme | 8.69e-14 | 122 |
muscle tissue | 8.70e-14 | 64 |
musculature | 8.70e-14 | 64 |
musculature of body | 8.70e-14 | 64 |
mesenchyme | 7.25e-12 | 160 |
entire embryonic mesenchyme | 7.25e-12 | 160 |
connective tissue | 5.70e-10 | 371 |
unilaminar epithelium | 2.17e-09 | 148 |
mesoderm | 5.98e-09 | 315 |
mesoderm-derived structure | 5.98e-09 | 315 |
presumptive mesoderm | 5.98e-09 | 315 |
integument | 2.51e-08 | 46 |
integumental system | 2.51e-08 | 46 |
surface structure | 3.88e-08 | 99 |
extraembryonic membrane | 1.24e-07 | 14 |
membranous layer | 1.24e-07 | 14 |
extraembryonic structure | 3.65e-07 | 24 |
skin of body | 5.90e-07 | 41 |
splanchnic layer of lateral plate mesoderm | 7.44e-07 | 83 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 7.59e-07 | 14 |