FFCP PHASE1:Hg19::chr2:219251500..219251533,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6556 | |EntrezGene=6556 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=10907 | |HGNC=10907 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=142bp_to_uc010fvr.2_5end | |association_with_transcript=142bp_to_uc010fvr.2_5end | ||
|cluster_id=chr2:219251500..219251533,+ | |||
|coexpression_cluster_id=C13 | |||
|description=CAGE_peak_9_at_SLC11A1_5end | |description=CAGE_peak_9_at_SLC11A1_5end | ||
|id=chr2:219251500..219251533,+ | |id=chr2:219251500..219251533,+ | ||
|ontology_enrichment_celltype=CL:0002057!1.40e-69!42;CL:0000860!3.75e-64!45;CL:0000766!2.90e-62!76;CL:0002194!2.25e-49!63;CL:0000576!2.25e-49!63;CL:0000040!2.25e-49!63;CL:0000559!2.25e-49!63;CL:0002009!1.67e-47!65;CL:0000839!1.39e-45!70;CL:0000557!8.94e-45!71;CL:0000763!9.23e-38!112;CL:0000049!9.23e-38!112;CL:0000738!7.51e-32!140;CL:0002087!7.60e-25!119;CL:0000037!3.13e-23!172;CL:0000566!3.13e-23!172;CL:0002032!3.36e-21!165;CL:0000837!3.36e-21!165;CL:0000988!3.60e-21!182;CL:0002031!1.27e-20!124;CL:0000094!1.76e-18!8;CL:0002393!3.12e-15!9;CL:0002397!3.12e-15!9;CL:0000081!5.56e-13!11;CL:0000775!8.86e-09!3;CL:0000842!1.95e-07!3;CL:0000767!5.71e-07!3 | |ontology_enrichment_celltype=CL:0002057!1.40e-69!42;CL:0000860!3.75e-64!45;CL:0000766!2.90e-62!76;CL:0002194!2.25e-49!63;CL:0000576!2.25e-49!63;CL:0000040!2.25e-49!63;CL:0000559!2.25e-49!63;CL:0002009!1.67e-47!65;CL:0000839!1.39e-45!70;CL:0000557!8.94e-45!71;CL:0000763!9.23e-38!112;CL:0000049!9.23e-38!112;CL:0000738!7.51e-32!140;CL:0002087!7.60e-25!119;CL:0000037!3.13e-23!172;CL:0000566!3.13e-23!172;CL:0002032!3.36e-21!165;CL:0000837!3.36e-21!165;CL:0000988!3.60e-21!182;CL:0002031!1.27e-20!124;CL:0000094!1.76e-18!8;CL:0002393!3.12e-15!9;CL:0002397!3.12e-15!9;CL:0000081!5.56e-13!11;CL:0000775!8.86e-09!3;CL:0000842!1.95e-07!3;CL:0000767!5.71e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.33e-88;33!CL:0002057;2.33e-88;33!CL:0000473;8.86e-68;39!CL:0000234;8.86e-68;39!CL:0000576;8.29e-52;48!CL:0000766;2.41e-38;69!CL:0000763;1.44e-20;100!CL:0000775;9.62e-19;3!CL:0000094;2.79e-18;8!CL:0000081;3.13e-13;11!CL:0000771;2.10e-12;2!CL:0002087;6.41e-12;104!CL:0000738;2.64e-11;136!CL:0000988;5.55e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,9.39e-98,42;CL:0002057,9.39e-98,42;CL:0000473,2.31e-91,48;CL:0000234,2.31e-91,48;CL:0000766,1.52e-82,72;CL:0002194,5.72e-72,59;CL:0000576,5.72e-72,59;CL:0000040,5.72e-72,59;CL:0000559,5.72e-72,59;CL:0002009,1.82e-69,61;CL:0000839,7.33e-64,66;CL:0000557,7.72e-63,67;CL:0000763,2.64e-53,108;CL:0000049,2.64e-53,108;CL:0000738,3.61e-41,136;CL:0002087,1.79e-34,115;CL:0002032,7.18e-34,161;CL:0000837,7.18e-34,161;CL:0002031,8.23e-33,120;CL:0000037,3.27e-32,168;CL:0000988,2.85e-30,177;CL:0000775,9.65e-19,3;CL:0000094,2.51e-18,8;CL:0000081,2.90e-13,11;CL:0000771,1.77e-12,2;CL:0000134,5.07e-12,354;CL:0002320,1.16e-11,361;CL:0000219,2.11e-10,386;CL:0000048,7.40e-09,427;CL:0000723,1.21e-08,433;CL:0000034,2.28e-08,441 | |||
|ontology_enrichment_development_v019=CL:0002057;7.49e-71;42!CL:0000049;1.79e-18;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!6.28e-42!102;UBERON:0003061!6.28e-42!102;UBERON:0002371!2.09e-38!80;UBERON:0002193!6.05e-37!112;UBERON:0001474!6.69e-35!86;UBERON:0004765!5.78e-28!101;UBERON:0001434!5.78e-28!101;UBERON:0002405!2.85e-27!115;UBERON:0002204!8.01e-16!167;UBERON:0003081!3.00e-14!216;UBERON:0007023!3.07e-09!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002171;3.78e-07;1!UBERON:0006518;3.78e-07;1!UBERON:0008949;3.78e-07;1!UBERON:0000101;3.78e-07;1!UBERON:0002167;3.78e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.84e-55,76;UBERON:0001474,1.86e-50,82;UBERON:0004765,1.61e-45,90;UBERON:0002390,1.27e-44,98;UBERON:0003061,1.27e-44,98;UBERON:0002405,6.94e-44,93;UBERON:0001434,1.90e-40,100;UBERON:0002193,5.41e-40,108;UBERON:0002204,5.22e-22,167;UBERON:0003081,1.29e-18,203;UBERON:0002384,3.55e-11,371;UBERON:0000926,6.93e-10,315;UBERON:0004120,6.93e-10,315;UBERON:0006603,6.93e-10,315;UBERON:0002171,3.78e-07,1;UBERON:0006518,3.78e-07,1;UBERON:0008949,3.78e-07,1;UBERON:0000101,3.78e-07,1;UBERON:0002167,3.78e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,0.309632246632152,0,0,0,0,0,0,0.553995408531877,1.80490002723128,0.868043482863407,0,0,0,5.08893835728477,5.29026321164333,1.94067248950253,3.25400651667958,1.6446715520873,1.23882548358041,1.43846196161075,1.2808035326455,0.709446689665756,1.72372840368309,0,1.35426486594342,8.094420600332,5.18521685109907,1.34834090667051,6.73384563215986,6.73950956859797,7.67204550958849,1.31940520074686,3.39088217956774,0.426224750532694,1.45104619314292,0,0,3.01498398308092,2.08593167368081,1.08594422352558,0.605399502633369,1.84138817993782,0,0.633765858935825,1.4882300997553,0.419317291016752,0.44931452458598,1.35159203557356,1.28580469357664,0,1.19350006319454,0.547992461293902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0.297262324577456,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10833939483032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.2192177423627,29.9161459204025,26.5225928599063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0.647142602455851,0.74709290462411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879049075631364,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0.611030144933625,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.63186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0.279282401272254,0,0,0,0.429226048136571,0,0.0671834724867263,0,0,0,0,0,0,0,0.795229689809303,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.13223260174269,0,0,0.854299300541557,0.157204305099666,4.97086866416635,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0.573409195690071,0.221858103073705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0.245148321753905,0,0.981542335574726,0.297046400327086,0,0,0.375935671919414,0.193373663920732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.530450887527676,0,0,0.103432995861895,0,0,0,0.186224142887574,0,0,0,0.217716747896961,0,0,0.215166616178029,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,0.309632246632152,0,0,0,0,0,0,0.553995408531877,1.80490002723128,0.868043482863407,0,0,0,5.08893835728477,5.29026321164333,1.94067248950253,3.25400651667958,1.6446715520873,1.23882548358041,1.43846196161075,1.2808035326455,0.709446689665756,1.72372840368309,0,1.35426486594342,8.094420600332,5.18521685109907,1.34834090667051,6.73384563215986,6.73950956859797,7.67204550958849,1.31940520074686,3.39088217956774,0.426224750532694,1.45104619314292,0,0,3.01498398308092,2.08593167368081,1.08594422352558,0.605399502633369,1.84138817993782,0,0.633765858935825,1.4882300997553,0.419317291016752,0.44931452458598,1.35159203557356,1.28580469357664,0,1.19350006319454,0.547992461293902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0.297262324577456,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10833939483032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.2192177423627,29.9161459204025,26.5225928599063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0.647142602455851,0.74709290462411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879049075631364,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0.611030144933625,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.63186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0.279282401272254,0,0,0,0.429226048136571,0,0.0671834724867263,0,0,0,0,0,0,0,0.795229689809303,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.13223260174269,0,0,0.854299300541557,0.157204305099666,4.97086866416635,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0.573409195690071,0.221858103073705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0.245148321753905,0,0.981542335574726,0.297046400327086,0,0,0.375935671919414,0.193373663920732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.530450887527676,0,0,0.103432995861895,0,0,0,0.186224142887574,0,0,0,0.217716747896961,0,0,0.215166616178029,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p9@SLC11A1 | |short_description=p9@SLC11A1 | ||
}} | }} |
Latest revision as of 17:22, 24 September 2015
Short description: | p9@SLC11A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SLC11A1_5end |
Coexpression cluster: | C13_Neutrophils_Eosinophils_CD14_Monocytederived_Whole_Peripheral_CD4 |
Association with transcript: | 142bp_to_uc010fvr.2_5end |
EntrezGene: | SLC11A1 |
HGNC: | 10907 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 9.39e-98 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.39e-98 | 42 |
defensive cell | 2.31e-91 | 48 |
phagocyte | 2.31e-91 | 48 |
myeloid leukocyte | 1.52e-82 | 72 |
monopoietic cell | 5.72e-72 | 59 |
monocyte | 5.72e-72 | 59 |
monoblast | 5.72e-72 | 59 |
promonocyte | 5.72e-72 | 59 |
macrophage dendritic cell progenitor | 1.82e-69 | 61 |
myeloid lineage restricted progenitor cell | 7.33e-64 | 66 |
granulocyte monocyte progenitor cell | 7.72e-63 | 67 |
myeloid cell | 2.64e-53 | 108 |
common myeloid progenitor | 2.64e-53 | 108 |
leukocyte | 3.61e-41 | 136 |
nongranular leukocyte | 1.79e-34 | 115 |
hematopoietic oligopotent progenitor cell | 7.18e-34 | 161 |
hematopoietic multipotent progenitor cell | 7.18e-34 | 161 |
hematopoietic lineage restricted progenitor cell | 8.23e-33 | 120 |
hematopoietic stem cell | 3.27e-32 | 168 |
hematopoietic cell | 2.85e-30 | 177 |
neutrophil | 9.65e-19 | 3 |
granulocyte | 2.51e-18 | 8 |
blood cell | 2.90e-13 | 11 |
eosinophil | 1.77e-12 | 2 |
mesenchymal cell | 5.07e-12 | 354 |
connective tissue cell | 1.16e-11 | 361 |
motile cell | 2.11e-10 | 386 |
multi fate stem cell | 7.40e-09 | 427 |
somatic stem cell | 1.21e-08 | 433 |
stem cell | 2.28e-08 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 7.84e-55 | 76 |
bone element | 1.86e-50 | 82 |
skeletal element | 1.61e-45 | 90 |
hematopoietic system | 1.27e-44 | 98 |
blood island | 1.27e-44 | 98 |
immune system | 6.94e-44 | 93 |
skeletal system | 1.90e-40 | 100 |
hemolymphoid system | 5.41e-40 | 108 |
musculoskeletal system | 5.22e-22 | 167 |
lateral plate mesoderm | 1.29e-18 | 203 |
connective tissue | 3.55e-11 | 371 |
mesoderm | 6.93e-10 | 315 |
mesoderm-derived structure | 6.93e-10 | 315 |
presumptive mesoderm | 6.93e-10 | 315 |
lower lobe of right lung | 3.78e-07 | 1 |
right lung lobe | 3.78e-07 | 1 |
lower lobe of lung | 3.78e-07 | 1 |
lobe of lung | 3.78e-07 | 1 |
right lung | 3.78e-07 | 1 |