FFCP PHASE1:Hg19::chr1:153333155..153333181,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:153333155..153333181,- | |||
|coexpression_cluster_id=C1837 | |||
|description=CAGE_peak_at_chr1:153333155..153333181,- | |description=CAGE_peak_at_chr1:153333155..153333181,- | ||
|id=chr1:153333155..153333181,- | |id=chr1:153333155..153333181,- | ||
|ontology_enrichment_celltype=CL:0002057!2.13e-52!42;CL:0000860!6.83e-48!45;CL:0000766!6.56e-47!76;CL:0002194!9.63e-44!63;CL:0000576!9.63e-44!63;CL:0000040!9.63e-44!63;CL:0000559!9.63e-44!63;CL:0002009!6.81e-42!65;CL:0000839!9.76e-38!70;CL:0000557!5.62e-37!71;CL:0000763!6.22e-33!112;CL:0000049!6.22e-33!112;CL:0000738!4.69e-28!140;CL:0002087!6.24e-27!119;CL:0000037!4.94e-25!172;CL:0000566!4.94e-25!172;CL:0002032!7.46e-23!165;CL:0000837!7.46e-23!165;CL:0000988!1.85e-22!182;CL:0002031!1.23e-21!124;CL:0002393!3.55e-12!9;CL:0002397!3.55e-12!9;CL:0000094!7.09e-09!8 | |ontology_enrichment_celltype=CL:0002057!2.13e-52!42;CL:0000860!6.83e-48!45;CL:0000766!6.56e-47!76;CL:0002194!9.63e-44!63;CL:0000576!9.63e-44!63;CL:0000040!9.63e-44!63;CL:0000559!9.63e-44!63;CL:0002009!6.81e-42!65;CL:0000839!9.76e-38!70;CL:0000557!5.62e-37!71;CL:0000763!6.22e-33!112;CL:0000049!6.22e-33!112;CL:0000738!4.69e-28!140;CL:0002087!6.24e-27!119;CL:0000037!4.94e-25!172;CL:0000566!4.94e-25!172;CL:0002032!7.46e-23!165;CL:0000837!7.46e-23!165;CL:0000988!1.85e-22!182;CL:0002031!1.23e-21!124;CL:0002393!3.55e-12!9;CL:0002397!3.55e-12!9;CL:0000094!7.09e-09!8 | ||
|ontology_enrichment_celltype_v019=CL:0000860;7.24e-47;33!CL:0002057;7.24e-47;33!CL:0000473;6.36e-37;39!CL:0000234;6.36e-37;39!CL:0000576;2.08e-33;48!CL:0000766;6.70e-23;69!CL:0002393;2.40e-12;6!CL:0002397;2.40e-12;6!CL:0000094;2.79e-12;8!CL:0000763;6.19e-10;100!CL:0000775;1.37e-09;3!CL:0000081;9.77e-09;11!CL:0002087;3.66e-08;104!CL:0000738;3.21e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.01e-58,42;CL:0002057,2.01e-58,42;CL:0000473,1.31e-53,48;CL:0000234,1.31e-53,48;CL:0000766,5.25e-50,72;CL:0002194,9.00e-44,59;CL:0000576,9.00e-44,59;CL:0000040,9.00e-44,59;CL:0000559,9.00e-44,59;CL:0002009,4.63e-42,61;CL:0000839,3.11e-38,66;CL:0000557,1.55e-37,67;CL:0000763,5.46e-30,108;CL:0000049,5.46e-30,108;CL:0000738,1.27e-24,136;CL:0002087,4.02e-21,115;CL:0000037,6.01e-18,168;CL:0002031,3.52e-17,120;CL:0002032,7.92e-17,161;CL:0000837,7.92e-17,161;CL:0000988,1.64e-16,177;CL:0000094,2.80e-12,8;CL:0000775,1.10e-09,3;CL:0000081,9.80e-09,11;CL:0002393,4.85e-08,9;CL:0002397,4.85e-08,9 | |||
|ontology_enrichment_development_v019=CL:0002057;5.31e-42;42!CL:0000049;5.05e-09;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.09e-46!102;UBERON:0003061!3.09e-46!102;UBERON:0002193!2.56e-43!112;UBERON:0002371!1.63e-32!80;UBERON:0001474!4.12e-29!86;UBERON:0004765!6.65e-25!101;UBERON:0001434!6.65e-25!101;UBERON:0002405!6.92e-25!115;UBERON:0000178!8.56e-14!15;UBERON:0000179!8.56e-14!15;UBERON:0000463!8.56e-14!15;UBERON:0003081!5.01e-13!216;UBERON:0002204!3.66e-09!167 | |ontology_enrichment_uberon=UBERON:0002390!3.09e-46!102;UBERON:0003061!3.09e-46!102;UBERON:0002193!2.56e-43!112;UBERON:0002371!1.63e-32!80;UBERON:0001474!4.12e-29!86;UBERON:0004765!6.65e-25!101;UBERON:0001434!6.65e-25!101;UBERON:0002405!6.92e-25!115;UBERON:0000178!8.56e-14!15;UBERON:0000179!8.56e-14!15;UBERON:0000463!8.56e-14!15;UBERON:0003081!5.01e-13!216;UBERON:0002204!3.66e-09!167 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.90e-22;15!UBERON:0000179;2.90e-22;15!UBERON:0000463;2.90e-22;15!UBERON:0002390;1.34e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.38e-46,98;UBERON:0003061,4.38e-46,98;UBERON:0002193,6.48e-43,108;UBERON:0002371,4.46e-32,76;UBERON:0001474,4.22e-29,82;UBERON:0004765,1.39e-27,90;UBERON:0002405,2.12e-26,93;UBERON:0001434,6.10e-24,100;UBERON:0000178,3.53e-22,15;UBERON:0000179,3.53e-22,15;UBERON:0000463,3.53e-22,15;UBERON:0003081,1.92e-16,203;UBERON:0002204,6.69e-11,167;UBERON:0000926,6.87e-07,315;UBERON:0004120,6.87e-07,315;UBERON:0006603,6.87e-07,315 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,1.15148819429164,1.39334510984468,1.83884244895785,0.90361775633475,2.21852406100073,0,0,0.587200878669695,6.64794490238253,3.81034450193269,7.81239134577067,1.11957737119962,0,0.257575567634187,3.19876125315042,0.377875943688809,0.727752183563449,3.0215774797739,1.6446715520873,2.16794459626573,6.90461741573161,1.7931249457037,2.60130452877444,3.10271112662957,1.93645405075148,0,1.31769637679823,0.818718450173537,1.79778787556068,3.36692281607993,0.641858054152187,2.55734850319616,5.93732340336089,2.79249120670285,2.55734850319616,4.93355705668593,1.70215567407342,1.24564449799115,3.26623264833766,3.12889751052121,0.868755378820466,6.05399502633369,0.736555271975129,1.89877432464531,0.422510572623884,1.06302149982522,2.30624510059213,7.75067554910816,10.2120287132224,1.76798145366788,0.855038231223746,0.59675003159727,0.182664153764634,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09288586487763,1.48313777113772,0.324547393654683,0.174129737299267,0,0.953962497221368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.83152132908242,2.45471508531751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0.329250856225877,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,0.702012795417713,2.67536092119711,1.87467667973554,0,0.708875486211932,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0.215627574859517,0.513372145118994,0,0,0,0,0,3.74503511973591,23.932916736322,1.65766205374414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03384013061444,4.31428401637234,0.853820462427555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4875642382488,0.960950336825531,0.255225424989168,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,1.33029046061003,0.229723400206959,3.55213326462519,5.35246044999663,6.26611905891579,3.57347663186684,4.93634727703433,3.24236655596359,1.62009431171434,8.72437693923697,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0.156679895773023,0,0.169291777801603,0,0,0.851692475380653,0.343505344755765,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.659215496907038,0,0,0,0,0,0,0,0,0,0,0,21.5534783112246,0,0,0,0,0,0,0,0.1137934482855,0,1.89110145414349,0,0,0,0,0,0,0,0,0,0,0,0.769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0.569219092059585,0,0,0.195984794828755,0.0870592065804026,0,0,0,0,0,3.58859361007152,0,1.12990370390266,0,0,0,0.586654148204409,0,0.213452994739353,0,0,0,0,0,0,4.00679858848552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34804281319486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366857197043358,0.231051332300676,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0.496211178389294,0,1.66091155931474,0,0,0,0,0.177404740325278,0,0,0,0,0,0.444925607568277,0,0,0,0,0,0,0,0,0,0,0,0.828864656652147,0.3414369541879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0.515663103788617,0,1.07132363163395,0,0,0,0,0.286679166302903,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,2.13233981900981,0,0.0645889098360061,0.124149428591716,0,0.0636471582781649,0,11.103554142745,3.08009970976753,1.81850543139386,1.5061663132462,0.665320713092027,0.407016343054873,0,0,0,0,0.366724332548599,4.47585796147312,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,1.15148819429164,1.39334510984468,1.83884244895785,0.90361775633475,2.21852406100073,0,0,0.587200878669695,6.64794490238253,3.81034450193269,7.81239134577067,1.11957737119962,0,0.257575567634187,3.19876125315042,0.377875943688809,0.727752183563449,3.0215774797739,1.6446715520873,2.16794459626573,6.90461741573161,1.7931249457037,2.60130452877444,3.10271112662957,1.93645405075148,0,1.31769637679823,0.818718450173537,1.79778787556068,3.36692281607993,0.641858054152187,2.55734850319616,5.93732340336089,2.79249120670285,2.55734850319616,4.93355705668593,1.70215567407342,1.24564449799115,3.26623264833766,3.12889751052121,0.868755378820466,6.05399502633369,0.736555271975129,1.89877432464531,0.422510572623884,1.06302149982522,2.30624510059213,7.75067554910816,10.2120287132224,1.76798145366788,0.855038231223746,0.59675003159727,0.182664153764634,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09288586487763,1.48313777113772,0.324547393654683,0.174129737299267,0,0.953962497221368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.83152132908242,2.45471508531751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0.329250856225877,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,0.702012795417713,2.67536092119711,1.87467667973554,0,0.708875486211932,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0.215627574859517,0.513372145118994,0,0,0,0,0,3.74503511973591,23.932916736322,1.65766205374414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03384013061444,4.31428401637234,0.853820462427555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4875642382488,0.960950336825531,0.255225424989168,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,1.33029046061003,0.229723400206959,3.55213326462519,5.35246044999663,6.26611905891579,3.57347663186684,4.93634727703433,3.24236655596359,1.62009431171434,8.72437693923697,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0.156679895773023,0,0.169291777801603,0,0,0.851692475380653,0.343505344755765,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.659215496907038,0,0,0,0,0,0,0,0,0,0,0,21.5534783112246,0,0,0,0,0,0,0,0.1137934482855,0,1.89110145414349,0,0,0,0,0,0,0,0,0,0,0,0.769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0.569219092059585,0,0,0.195984794828755,0.0870592065804026,0,0,0,0,0,3.58859361007152,0,1.12990370390266,0,0,0,0.586654148204409,0,0.213452994739353,0,0,0,0,0,0,4.00679858848552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34804281319486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366857197043358,0.231051332300676,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0.496211178389294,0,1.66091155931474,0,0,0,0,0.177404740325278,0,0,0,0,0,0.444925607568277,0,0,0,0,0,0,0,0,0,0,0,0.828864656652147,0.3414369541879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0.515663103788617,0,1.07132363163395,0,0,0,0,0.286679166302903,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,2.13233981900981,0,0.0645889098360061,0.124149428591716,0,0.0636471582781649,0,11.103554142745,3.08009970976753,1.81850543139386,1.5061663132462,0.665320713092027,0.407016343054873,0,0,0,0,0.366724332548599,4.47585796147312,0,0,0 | ||
|short_description=p@chr1:153333155..153333181,- | |short_description=p@chr1:153333155..153333181,- | ||
}} | }} |
Latest revision as of 21:41, 27 July 2015
Short description: | p@chr1:153333155..153333181, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:153333155..153333181, - |
Coexpression cluster: | C1837_Neutrophils_Eosinophils_tongue_CD14_esophagus_Whole_blood |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.01e-58 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.01e-58 | 42 |
defensive cell | 1.31e-53 | 48 |
phagocyte | 1.31e-53 | 48 |
myeloid leukocyte | 5.25e-50 | 72 |
monopoietic cell | 9.00e-44 | 59 |
monocyte | 9.00e-44 | 59 |
monoblast | 9.00e-44 | 59 |
promonocyte | 9.00e-44 | 59 |
macrophage dendritic cell progenitor | 4.63e-42 | 61 |
myeloid lineage restricted progenitor cell | 3.11e-38 | 66 |
granulocyte monocyte progenitor cell | 1.55e-37 | 67 |
myeloid cell | 5.46e-30 | 108 |
common myeloid progenitor | 5.46e-30 | 108 |
leukocyte | 1.27e-24 | 136 |
nongranular leukocyte | 4.02e-21 | 115 |
hematopoietic stem cell | 6.01e-18 | 168 |
hematopoietic lineage restricted progenitor cell | 3.52e-17 | 120 |
hematopoietic oligopotent progenitor cell | 7.92e-17 | 161 |
hematopoietic multipotent progenitor cell | 7.92e-17 | 161 |
hematopoietic cell | 1.64e-16 | 177 |
granulocyte | 2.80e-12 | 8 |
neutrophil | 1.10e-09 | 3 |
blood cell | 9.80e-09 | 11 |
intermediate monocyte | 4.85e-08 | 9 |
CD14-positive, CD16-positive monocyte | 4.85e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.38e-46 | 98 |
blood island | 4.38e-46 | 98 |
hemolymphoid system | 6.48e-43 | 108 |
bone marrow | 4.46e-32 | 76 |
bone element | 4.22e-29 | 82 |
skeletal element | 1.39e-27 | 90 |
immune system | 2.12e-26 | 93 |
skeletal system | 6.10e-24 | 100 |
blood | 3.53e-22 | 15 |
haemolymphatic fluid | 3.53e-22 | 15 |
organism substance | 3.53e-22 | 15 |
lateral plate mesoderm | 1.92e-16 | 203 |
musculoskeletal system | 6.69e-11 | 167 |
mesoderm | 6.87e-07 | 315 |
mesoderm-derived structure | 6.87e-07 | 315 |
presumptive mesoderm | 6.87e-07 | 315 |