FFCP PHASE1:Hg19::chr13:53422767..53422780,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr13:53422767..53422780,-
|short_description=p1@PCDH8
|description=CAGE_peak_1_at_PCDH8_5end
|association_with_transcript=0bp_to_ENST00000377942,ENST0000041840...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5100 | |EntrezGene=5100 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8660 | |HGNC=8660 | ||
|TSSclassifier=strong | |||
|UniProt=O95206,B4DEQ8 | |UniProt=O95206,B4DEQ8 | ||
|association_with_transcript=0bp_to_ENST00000377942,ENST00000418407,ENST00000448969,NM_002590,NM_032949,uc001vhi.2,uc001vhj.2_5end | |||
|cluster_id=chr13:53422767..53422780,- | |||
|coexpression_cluster_id=C561 | |||
|description=CAGE_peak_1_at_PCDH8_5end | |||
|id=chr13:53422767..53422780,- | |||
|ontology_enrichment_celltype=CL:0000047!1.66e-10!8;CL:0002319!1.95e-08!25;CL:0000540!5.09e-08!6;CL:0000031!5.09e-08!6;CL:0000404!5.09e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0002319;4.51e-13;25!CL:0000540;6.31e-12;6!CL:0000404;6.31e-12;6!CL:0002321;2.86e-11;15!CL:0000333;6.82e-10;5!CL:0002322;7.74e-10;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,6.91e-16,8;CL:0002319,4.77e-13,25;CL:0000540,6.57e-12,6;CL:0000031,6.57e-12,6;CL:0000404,6.57e-12,6;CL:0000133,4.87e-11,59;CL:0002322,7.67e-10,5;CL:0000221,4.50e-08,72 | |||
|ontology_enrichment_development_v019=UBERON:0006601;8.90e-15;82!CL:0000031;6.31e-12;6 | |||
|ontology_enrichment_disease=DOID:3095!1.27e-11!22;DOID:2994!1.27e-11!22;DOID:171!1.26e-09!10 | |||
|ontology_enrichment_disease_v019=DOID:171;5.09e-12;10!DOID:3095;3.46e-10;22!DOID:2994;3.46e-10;22!DOID:169;3.62e-08;6 | |||
|ontology_enrichment_disease_v019_2=DOID:171,4.68e-12,10;DOID:3095,3.63e-10,22;DOID:2994,3.63e-10,22;DOID:169,3.39e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0001017!4.83e-60!82;UBERON:0000073!7.31e-60!94;UBERON:0001016!7.31e-60!94;UBERON:0005743!4.28e-58!86;UBERON:0001049!4.29e-55!57;UBERON:0005068!4.29e-55!57;UBERON:0006241!4.29e-55!57;UBERON:0007135!4.29e-55!57;UBERON:0003080!2.85e-46!42;UBERON:0002616!6.75e-46!59;UBERON:0000955!1.54e-45!69;UBERON:0006238!1.54e-45!69;UBERON:0002780!1.71e-45!41;UBERON:0001890!1.71e-45!41;UBERON:0006240!1.71e-45!41;UBERON:0002346!1.15e-42!90;UBERON:0001893!1.99e-41!34;UBERON:0002020!8.46e-41!34;UBERON:0003528!8.46e-41!34;UBERON:0002791!3.95e-40!33;UBERON:0001869!9.01e-40!32;UBERON:0003075!1.27e-38!86;UBERON:0007284!1.27e-38!86;UBERON:0003056!2.77e-33!61;UBERON:0000924!4.58e-33!173;UBERON:0006601!4.58e-33!173;UBERON:0000956!2.31e-31!25;UBERON:0000203!2.31e-31!25;UBERON:0004121!6.94e-30!169;UBERON:0007023!1.34e-29!115;UBERON:0002619!1.09e-28!22;UBERON:0001950!2.75e-26!20;UBERON:0000153!6.99e-25!129;UBERON:0007811!6.99e-25!129;UBERON:0000033!3.05e-24!123;UBERON:0002420!1.42e-11!9;UBERON:0007245!1.42e-11!9;UBERON:0010009!1.42e-11!9;UBERON:0010011!1.42e-11!9;UBERON:0000454!1.42e-11!9;UBERON:0001871!7.89e-11!7;UBERON:0002308!9.21e-11!9;UBERON:0000125!9.21e-11!9;UBERON:0003076!3.18e-10!15;UBERON:0003057!3.18e-10!15;UBERON:0009663!3.84e-09!7;UBERON:0000200!1.18e-08!6;UBERON:0000922!1.24e-08!612;UBERON:0000025!1.40e-08!194;UBERON:0000064!3.13e-08!219;UBERON:0002298!8.44e-08!8;UBERON:0000349!1.05e-07!5;UBERON:0001872!1.57e-07!5;UBERON:0004733!1.78e-07!12;UBERON:0002028!1.78e-07!12;UBERON:0007277!1.78e-07!12;UBERON:0002021!1.83e-07!5;UBERON:0000013!8.91e-07!5;UBERON:0002410!8.91e-07!5;UBERON:0000468!9.43e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;3.41e-57;32!UBERON:0001893;1.70e-54;34!UBERON:0002791;8.00e-54;32!UBERON:0003528;1.07e-51;34!UBERON:0002020;1.07e-51;34!UBERON:0000956;1.79e-49;25!UBERON:0000203;1.79e-49;25!UBERON:0002780;5.39e-48;41!UBERON:0001890;5.39e-48;41!UBERON:0002619;3.84e-45;22!UBERON:0001950;2.98e-41;20!UBERON:0000073;5.48e-36;53!UBERON:0002616;5.48e-36;53!UBERON:0000955;3.04e-27;68!UBERON:0001017;9.59e-27;75!UBERON:0001016;1.15e-26;83!UBERON:0001871;1.31e-14;6!UBERON:0002420;1.34e-14;9!UBERON:0007245;1.34e-14;9!UBERON:0010009;1.34e-14;9!UBERON:0010011;1.34e-14;9!UBERON:0000454;1.34e-14;9!UBERON:0000200;6.55e-13;6!UBERON:0000349;1.97e-11;5!UBERON:0000922;3.04e-11;49!UBERON:0001872;3.84e-11;5!UBERON:0002021;4.92e-11;5!UBERON:0000125;7.96e-11;9!UBERON:0002308;7.96e-11;9!UBERON:0009663;8.65e-11;7!UBERON:0011216;4.20e-10;132!UBERON:0000013;6.82e-10;5!UBERON:0002410;6.82e-10;5!UBERON:0000369;1.81e-09;4!UBERON:0002435;1.81e-09;4!UBERON:0000204;1.81e-09;4!UBERON:0007023;6.58e-08;114!UBERON:0005383;2.02e-07;3!UBERON:0005382;2.02e-07;3!UBERON:0001870;2.65e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.25e-82,89;UBERON:0001017,3.78e-78,81;UBERON:0001049,8.31e-68,56;UBERON:0005068,8.31e-68,56;UBERON:0006241,8.31e-68,56;UBERON:0007135,8.31e-68,56;UBERON:0002780,1.56e-66,41;UBERON:0001890,1.56e-66,41;UBERON:0003080,1.56e-66,41;UBERON:0006240,1.56e-66,41;UBERON:0001869,5.47e-63,32;UBERON:0000073,7.35e-63,53;UBERON:0002616,7.35e-63,53;UBERON:0001893,1.86e-62,34;UBERON:0002791,9.85e-59,32;UBERON:0000955,2.14e-58,68;UBERON:0006238,2.14e-58,68;UBERON:0003528,2.50e-58,34;UBERON:0002020,2.50e-58,34;UBERON:0002346,3.11e-52,86;UBERON:0000956,1.97e-49,25;UBERON:0000203,1.97e-49,25;UBERON:0003075,3.72e-48,82;UBERON:0007284,3.72e-48,82;UBERON:0003056,5.06e-48,61;UBERON:0002619,3.97e-45,22;UBERON:0004121,1.51e-43,171;UBERON:0000924,1.51e-43,171;UBERON:0006601,1.51e-43,171;UBERON:0001950,2.95e-41,20;UBERON:0010371,9.45e-37,104;UBERON:0011216,1.56e-29,223;UBERON:0010314,7.99e-26,132;UBERON:0007023,1.51e-22,114;UBERON:0001871,1.23e-14,6;UBERON:0002420,1.34e-14,9;UBERON:0007245,1.34e-14,9;UBERON:0010009,1.34e-14,9;UBERON:0010011,1.34e-14,9;UBERON:0000454,1.34e-14,9;UBERON:0000200,6.36e-13,6;UBERON:0000349,2.07e-11,5;UBERON:0000025,3.65e-11,192;UBERON:0001872,3.96e-11,5;UBERON:0002021,5.08e-11,5;UBERON:0000125,7.97e-11,9;UBERON:0002308,7.97e-11,9;UBERON:0009663,8.66e-11,7;UBERON:0000013,6.32e-10,5;UBERON:0002410,6.32e-10,5;UBERON:0000369,1.78e-09,4;UBERON:0002435,1.78e-09,4;UBERON:0000204,1.78e-09,4;UBERON:0010082,1.78e-09,4;UBERON:0005383,1.95e-07,3;UBERON:0005382,1.95e-07,3;UBERON:0000922,2.31e-07,592;UBERON:0001870,2.62e-07,3;UBERON:0004111,4.01e-07,240 | |||
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| ||
|short_description=p1@PCDH8 | |||
}} | }} |
Latest revision as of 19:52, 17 September 2015
Short description: | p1@PCDH8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PCDH8_5end |
Coexpression cluster: | C561_brain_Neural_spinal_Neurons_parietal_temporal_occipital |
Association with transcript: | 0bp_to_ENST00000377942, ENST00000418407, ENST00000448969, NM_002590, NM_032949, uc001vhi.2, uc001vhj.2_5end |
EntrezGene: | PCDH8 |
HGNC: | 8660 |
UniProt: | O95206B4DEQ8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 6.91e-16 | 8 |
neural cell | 4.77e-13 | 25 |
neuron | 6.57e-12 | 6 |
neuroblast | 6.57e-12 | 6 |
electrically signaling cell | 6.57e-12 | 6 |
neurectodermal cell | 4.87e-11 | 59 |
embryonic stem cell | 7.67e-10 | 5 |
ectodermal cell | 4.50e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 4.68e-12 | 10 |
germ cell and embryonal cancer | 3.63e-10 | 22 |
germ cell cancer | 3.63e-10 | 22 |
neuroendocrine tumor | 3.39e-08 | 6 |