FFCP PHASE1:Hg19::chr4:185771819..185771833,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:185771819..185771833,- | |||
|coexpression_cluster_id=C1939 | |||
|description=CAGE_peak_at_chr4:185771819..185771833,- | |description=CAGE_peak_at_chr4:185771819..185771833,- | ||
|id=chr4:185771819..185771833,- | |id=chr4:185771819..185771833,- | ||
|ontology_enrichment_celltype=CL:0002057!7.44e-92!42;CL:0000860!4.08e-85!45;CL:0002194!4.75e-68!63;CL:0000576!4.75e-68!63;CL:0000040!4.75e-68!63;CL:0000559!4.75e-68!63;CL:0002009!1.09e-65!65;CL:0000766!2.04e-61!76;CL:0000839!2.24e-60!70;CL:0000557!2.12e-59!71;CL:0002087!1.35e-54!119;CL:0000738!2.86e-49!140;CL:0002031!3.18e-47!124;CL:0000988!3.49e-41!182;CL:0000763!1.26e-38!112;CL:0000049!1.26e-38!112;CL:0000037!5.09e-38!172;CL:0000566!5.09e-38!172;CL:0002032!2.03e-36!165;CL:0000837!2.03e-36!165;CL:0000080!1.31e-14!6;CL:0000134!2.40e-12!358;CL:0002320!6.83e-12!365;CL:0000219!2.72e-10!390;CL:0002393!5.02e-09!9;CL:0002397!5.02e-09!9;CL:0000048!2.18e-08!430;CL:0000723!4.05e-08!436;CL:0000034!9.00e-08!444 | |ontology_enrichment_celltype=CL:0002057!7.44e-92!42;CL:0000860!4.08e-85!45;CL:0002194!4.75e-68!63;CL:0000576!4.75e-68!63;CL:0000040!4.75e-68!63;CL:0000559!4.75e-68!63;CL:0002009!1.09e-65!65;CL:0000766!2.04e-61!76;CL:0000839!2.24e-60!70;CL:0000557!2.12e-59!71;CL:0002087!1.35e-54!119;CL:0000738!2.86e-49!140;CL:0002031!3.18e-47!124;CL:0000988!3.49e-41!182;CL:0000763!1.26e-38!112;CL:0000049!1.26e-38!112;CL:0000037!5.09e-38!172;CL:0000566!5.09e-38!172;CL:0002032!2.03e-36!165;CL:0000837!2.03e-36!165;CL:0000080!1.31e-14!6;CL:0000134!2.40e-12!358;CL:0002320!6.83e-12!365;CL:0000219!2.72e-10!390;CL:0002393!5.02e-09!9;CL:0002397!5.02e-09!9;CL:0000048!2.18e-08!430;CL:0000723!4.05e-08!436;CL:0000034!9.00e-08!444 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.03e-72;33!CL:0002057;2.03e-72;33!CL:0000473;4.70e-55;39!CL:0000234;4.70e-55;39!CL:0000576;3.77e-37;48!CL:0000766;1.12e-20;69!CL:0002087;3.02e-16;104!CL:0000763;3.76e-14;100!CL:0000738;2.07e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.29e-76,42;CL:0002057,1.29e-76,42;CL:0000473,1.23e-72,48;CL:0000234,1.23e-72,48;CL:0002194,3.19e-57,59;CL:0000576,3.19e-57,59;CL:0000040,3.19e-57,59;CL:0000559,3.19e-57,59;CL:0002009,3.12e-55,61;CL:0000839,8.90e-51,66;CL:0000557,5.78e-50,67;CL:0000766,3.10e-46,72;CL:0002087,1.28e-38,115;CL:0002031,8.02e-37,120;CL:0000738,6.01e-32,136;CL:0000988,5.36e-30,177;CL:0000763,1.83e-29,108;CL:0000049,1.83e-29,108;CL:0002032,2.98e-26,161;CL:0000837,2.98e-26,161;CL:0000037,5.86e-25,168;CL:0000134,3.45e-09,354;CL:0002320,6.56e-09,361;CL:0000219,6.36e-08,386 | |||
|ontology_enrichment_development_v019=CL:0002057;2.45e-55;42!CL:0000049;5.07e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4960;2.70e-08;1!DOID:0070004;2.70e-08;1!DOID:0060060;8.23e-08;1!DOID:0060061;8.23e-08;1!DOID:8691;8.23e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4960,2.70e-08,1;DOID:0070004,2.70e-08,1;DOID:0060060,9.10e-08,1;DOID:0060061,9.10e-08,1;DOID:8691,9.10e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0002390!2.75e-57!102;UBERON:0003061!2.75e-57!102;UBERON:0002371!5.33e-55!80;UBERON:0002193!3.01e-51!112;UBERON:0001474!1.61e-50!86;UBERON:0004765!1.26e-41!101;UBERON:0001434!1.26e-41!101;UBERON:0002405!2.09e-35!115;UBERON:0003081!1.05e-22!216;UBERON:0002204!2.07e-21!167;UBERON:0002384!2.85e-11!375;UBERON:0000178!8.69e-08!15;UBERON:0000179!8.69e-08!15;UBERON:0000463!8.69e-08!15;UBERON:0000926!1.37e-07!448;UBERON:0004120!1.37e-07!448;UBERON:0006603!1.37e-07!448 | |ontology_enrichment_uberon=UBERON:0002390!2.75e-57!102;UBERON:0003061!2.75e-57!102;UBERON:0002371!5.33e-55!80;UBERON:0002193!3.01e-51!112;UBERON:0001474!1.61e-50!86;UBERON:0004765!1.26e-41!101;UBERON:0001434!1.26e-41!101;UBERON:0002405!2.09e-35!115;UBERON:0003081!1.05e-22!216;UBERON:0002204!2.07e-21!167;UBERON:0002384!2.85e-11!375;UBERON:0000178!8.69e-08!15;UBERON:0000179!8.69e-08!15;UBERON:0000463!8.69e-08!15;UBERON:0000926!1.37e-07!448;UBERON:0004120!1.37e-07!448;UBERON:0006603!1.37e-07!448 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.70e-48,76;UBERON:0002390,1.39e-46,98;UBERON:0003061,1.39e-46,98;UBERON:0001474,5.91e-44,82;UBERON:0002193,7.29e-42,108;UBERON:0004765,1.10e-39,90;UBERON:0002405,2.87e-38,93;UBERON:0001434,2.71e-35,100;UBERON:0003081,4.73e-20,203;UBERON:0002204,2.47e-19,167;UBERON:0000926,4.03e-11,315;UBERON:0004120,4.03e-11,315;UBERON:0006603,4.03e-11,315;UBERON:0002384,1.58e-08,371 | |||
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|short_description=p@chr4:185771819..185771833,- | |short_description=p@chr4:185771819..185771833,- | ||
}} | }} |
Latest revision as of 03:56, 30 July 2015
Short description: | p@chr4:185771819..185771833, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:185771819..185771833, - |
Coexpression cluster: | C1939_cord_myeloma_CD14_Neutrophils_b_Whole_anaplastic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.29e-76 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.29e-76 | 42 |
defensive cell | 1.23e-72 | 48 |
phagocyte | 1.23e-72 | 48 |
monopoietic cell | 3.19e-57 | 59 |
monocyte | 3.19e-57 | 59 |
monoblast | 3.19e-57 | 59 |
promonocyte | 3.19e-57 | 59 |
macrophage dendritic cell progenitor | 3.12e-55 | 61 |
myeloid lineage restricted progenitor cell | 8.90e-51 | 66 |
granulocyte monocyte progenitor cell | 5.78e-50 | 67 |
myeloid leukocyte | 3.10e-46 | 72 |
nongranular leukocyte | 1.28e-38 | 115 |
hematopoietic lineage restricted progenitor cell | 8.02e-37 | 120 |
leukocyte | 6.01e-32 | 136 |
hematopoietic cell | 5.36e-30 | 177 |
myeloid cell | 1.83e-29 | 108 |
common myeloid progenitor | 1.83e-29 | 108 |
hematopoietic oligopotent progenitor cell | 2.98e-26 | 161 |
hematopoietic multipotent progenitor cell | 2.98e-26 | 161 |
hematopoietic stem cell | 5.86e-25 | 168 |
mesenchymal cell | 3.45e-09 | 354 |
connective tissue cell | 6.56e-09 | 361 |
motile cell | 6.36e-08 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 9.70e-48 | 76 |
hematopoietic system | 1.39e-46 | 98 |
blood island | 1.39e-46 | 98 |
bone element | 5.91e-44 | 82 |
hemolymphoid system | 7.29e-42 | 108 |
skeletal element | 1.10e-39 | 90 |
immune system | 2.87e-38 | 93 |
skeletal system | 2.71e-35 | 100 |
lateral plate mesoderm | 4.73e-20 | 203 |
musculoskeletal system | 2.47e-19 | 167 |
mesoderm | 4.03e-11 | 315 |
mesoderm-derived structure | 4.03e-11 | 315 |
presumptive mesoderm | 4.03e-11 | 315 |
connective tissue | 1.58e-08 | 371 |
Ontology term | p-value | n |
---|---|---|
bone marrow cancer | 2.70e-08 | 1 |
myeloma | 2.70e-08 | 1 |
non-Hodgkin lymphoma | 9.10e-08 | 1 |
cutaneous T cell lymphoma | 9.10e-08 | 1 |
mycosis fungoides | 9.10e-08 | 1 |