FFCP PHASE1:Hg19::chr13:89697185..89697189,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:89697185..89697189,- | |||
|coexpression_cluster_id=C3389 | |coexpression_cluster_id=C3389 | ||
|description=CAGE_peak_at_chr13:89697185..89697189,- | |description=CAGE_peak_at_chr13:89697185..89697189,- | ||
|id=chr13:89697185..89697189,- | |id=chr13:89697185..89697189,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000039;1.11e-07;7!CL:0000586;1.11e-07;7!CL:0000047;4.04e-07;2!CL:0000054;4.04e-07;2!CL:0000137;4.04e-07;2!CL:0000092;4.04e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.17e-07,7;CL:0000586,1.17e-07,7;CL:0000054,4.17e-07,2;CL:0000137,4.17e-07,2;CL:0000092,4.17e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0010227;2.32e-13;1!UBERON:0005425;5.70e-13;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060085;5.70e-13;1!DOID:3165;5.70e-13;1!DOID:0060121;5.70e-13;1!DOID:2438;5.70e-13;1!DOID:4418;5.70e-13;1!DOID:3095;9.11e-09;22!DOID:2994;9.11e-09;22!DOID:200;4.04e-07;2!DOID:4305;4.04e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:0060085,6.06e-13,1;DOID:3165,6.06e-13,1;DOID:0060121,6.06e-13,1;DOID:2438,6.06e-13,1;DOID:4418,6.06e-13,1;DOID:3095,8.84e-09,22;DOID:2994,8.84e-09,22;DOID:200,4.17e-07,2;DOID:4305,4.17e-07,2 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0002081;1.54e-24;2!UBERON:0004151;1.04e-16;3!UBERON:0002079;2.32e-13;1!UBERON:0001282;2.32e-13;1!UBERON:0009842;2.32e-13;1!UBERON:0003704;2.32e-13;1!UBERON:0001171;2.32e-13;1!UBERON:0001172;2.32e-13;1!UBERON:0002134;5.70e-13;1!UBERON:0000941;5.70e-13;1!UBERON:0001785;5.70e-13;1!UBERON:0002464;5.70e-13;1!UBERON:0004904;5.70e-13;1!UBERON:0001021;5.70e-13;1!UBERON:0005208;5.70e-13;1!UBERON:0004145;5.70e-13;1!UBERON:0005946;5.70e-13;1!UBERON:0005965;5.70e-13;1!UBERON:0002078;5.70e-13;1!UBERON:0003714;4.04e-07;2!UBERON:0005162;4.04e-07;2!UBERON:0000122;4.04e-07;2!UBERON:0002133;4.04e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002081,2.34e-24,2;UBERON:0010227,2.34e-24,2;UBERON:0004151,1.37e-16,3;UBERON:0001282,2.06e-13,1;UBERON:0009842,2.06e-13,1;UBERON:0003704,2.06e-13,1;UBERON:0001171,2.06e-13,1;UBERON:0001172,2.06e-13,1;UBERON:0002079,2.62e-13,1;UBERON:0002134,7.68e-13,1;UBERON:0005208,7.68e-13,1;UBERON:0005946,7.68e-13,1;UBERON:0005965,7.68e-13,1;UBERON:0002078,7.68e-13,1;UBERON:0000941,8.64e-13,1;UBERON:0001785,8.64e-13,1;UBERON:0002464,8.64e-13,1;UBERON:0004904,8.64e-13,1;UBERON:0001021,8.64e-13,1;UBERON:0003902,8.64e-13,1;UBERON:0005425,8.64e-13,1;UBERON:0002133,4.69e-07,2;UBERON:0003714,4.98e-07,2;UBERON:0005162,4.98e-07,2;UBERON:0000122,4.98e-07,2 | |||
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| ||
|short_description=p@chr13:89697185..89697189,- | |short_description=p@chr13:89697185..89697189,- | ||
}} | }} |
Latest revision as of 17:25, 24 July 2015
Short description: | p@chr13:89697185..89697189, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:89697185..89697189, - |
Coexpression cluster: | C3389_acute_adrenal_fibrous_cholangiocellular_liposarcoma_choriocarcinoma_teratocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.17e-07 | 7 |
germ cell | 1.17e-07 | 7 |
bone matrix secreting cell | 4.17e-07 | 2 |
osteocyte | 4.17e-07 | 2 |
osteoclast | 4.17e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
cardiac atrium | 2.34e-24 | 2 |
future cardiac atrium | 2.34e-24 | 2 |
cardiac chamber | 1.37e-16 | 3 |
intralobular bile duct | 2.06e-13 | 1 |
acinus | 2.06e-13 | 1 |
intrahepatic bile duct | 2.06e-13 | 1 |
portal lobule | 2.06e-13 | 1 |
hepatic acinus | 2.06e-13 | 1 |
left cardiac atrium | 2.62e-13 | 1 |
tricuspid valve | 7.68e-13 | 1 |
right atrium valve | 7.68e-13 | 1 |
outflow tract of atrium | 7.68e-13 | 1 |
outflow part of right atrium | 7.68e-13 | 1 |
right cardiac atrium | 7.68e-13 | 1 |
cranial nerve II | 8.64e-13 | 1 |
cranial nerve | 8.64e-13 | 1 |
nerve trunk | 8.64e-13 | 1 |
nerve connecting eye with brain | 8.64e-13 | 1 |
nerve | 8.64e-13 | 1 |
retinal neural layer | 8.64e-13 | 1 |
presumptive neural retina | 8.64e-13 | 1 |
atrioventricular valve | 4.69e-07 | 2 |
neural tissue | 4.98e-07 | 2 |
multi cell component structure | 4.98e-07 | 2 |
neuron projection bundle | 4.98e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
organ system benign neoplasm | 6.06e-13 | 1 |
skin benign neoplasm | 6.06e-13 | 1 |
integumentary system benign neoplasm | 6.06e-13 | 1 |
dermis tumor | 6.06e-13 | 1 |
cutaneous fibrous histiocytoma | 6.06e-13 | 1 |
germ cell and embryonal cancer | 8.84e-09 | 22 |
germ cell cancer | 8.84e-09 | 22 |
giant cell tumor | 4.17e-07 | 2 |
bone giant cell tumor | 4.17e-07 | 2 |