FFCP PHASE1:Hg19::chr1:200452510..200452521,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:200452510..200452521,- | |||
|coexpression_cluster_id=C1842 | |coexpression_cluster_id=C1842 | ||
|description=CAGE_peak_at_chr1:200452510..200452521,- | |description=CAGE_peak_at_chr1:200452510..200452521,- | ||
|id=chr1:200452510..200452521,- | |id=chr1:200452510..200452521,- | ||
|ontology_enrichment_celltype=CL:0002620!1.75e-16!23;CL:0000057!1.00e-14!75;CL:0000055!4.14e-13!180;CL:0002334!3.26e-11!12;CL:0002580!7.59e-10!3;CL:0002579!1.97e-09!3;CL:0000135!2.27e-09!3;CL:0000386!2.27e-09!3;CL:0000388!2.27e-09!3;CL:0000153!4.12e-08!9;CL:0000447!4.12e-08!9;CL:0000136!8.12e-08!15;CL:0002320!4.77e-07!365;CL:0000499!6.54e-07!27 | |ontology_enrichment_celltype=CL:0002620!1.75e-16!23;CL:0000057!1.00e-14!75;CL:0000055!4.14e-13!180;CL:0002334!3.26e-11!12;CL:0002580!7.59e-10!3;CL:0002579!1.97e-09!3;CL:0000135!2.27e-09!3;CL:0000386!2.27e-09!3;CL:0000388!2.27e-09!3;CL:0000153!4.12e-08!9;CL:0000447!4.12e-08!9;CL:0000136!8.12e-08!15;CL:0002320!4.77e-07!365;CL:0000499!6.54e-07!27 | ||
|ontology_enrichment_celltype_v019=CL:0002334;2.95e-33;12!CL:0002580;1.98e-26;3!CL:0002579;4.68e-25;3!CL:0000153;3.12e-23;9!CL:0000447;3.12e-23;9!CL:0000499;4.74e-14;28!CL:0000327;6.64e-14;15!CL:0000138;5.29e-13;6!CL:0000214;1.71e-12;3!CL:0000135;1.86e-12;3!CL:0000388;1.86e-12;3!CL:0000511;5.30e-10;1!CL:0002625;5.30e-10;1!CL:0000216;5.30e-10;1!CL:0002581;1.61e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,2.89e-33,12;CL:0002580,2.26e-26,3;CL:0002579,3.97e-25,3;CL:0000153,2.72e-23,9;CL:0000447,2.72e-23,9;CL:0000499,4.42e-14,28;CL:0000327,6.13e-14,15;CL:0000058,4.88e-13,6;CL:0000138,4.88e-13,6;CL:0000214,1.62e-12,3;CL:0000135,1.81e-12,3;CL:0000388,1.81e-12,3;CL:0000057,1.93e-11,76;CL:0000511,5.31e-10,1;CL:0002625,5.31e-10,1;CL:0000216,5.31e-10,1;CL:0002581,1.62e-09,1;CL:0000151,5.30e-08,36 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!9.07e-09!5;DOID:450!9.07e-09!5;DOID:66!9.07e-09!5;DOID:423!9.07e-09!5;DOID:0080000!9.07e-09!5;DOID:11722!9.07e-09!5 | |ontology_enrichment_disease=DOID:17!9.07e-09!5;DOID:450!9.07e-09!5;DOID:66!9.07e-09!5;DOID:423!9.07e-09!5;DOID:0080000!9.07e-09!5;DOID:11722!9.07e-09!5 | ||
|ontology_enrichment_disease_v019=DOID:4235;5.30e-10;1!DOID:6193;7.49e-10;1!DOID:3369;1.61e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4235,5.79e-10,1;DOID:6193,8.17e-10,1;DOID:3369,9.70e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0003688!2.83e-11!6;UBERON:0002358!2.83e-11!6;UBERON:0003684!2.83e-11!6;UBERON:0001178!2.83e-11!6;UBERON:0004457!1.30e-10!12;UBERON:0000042!1.30e-10!12;UBERON:0004905!1.04e-09!5;UBERON:0000982!1.04e-09!5;UBERON:0004770!1.04e-09!5;UBERON:0000043!2.27e-09!3;UBERON:0001443!1.00e-08!11;UBERON:0002384!3.30e-08!375;UBERON:0002097!3.45e-08!40;UBERON:0002199!5.77e-07!45;UBERON:0002416!5.77e-07!45;UBERON:0000310!6.50e-07!10 | |ontology_enrichment_uberon=UBERON:0003688!2.83e-11!6;UBERON:0002358!2.83e-11!6;UBERON:0003684!2.83e-11!6;UBERON:0001178!2.83e-11!6;UBERON:0004457!1.30e-10!12;UBERON:0000042!1.30e-10!12;UBERON:0004905!1.04e-09!5;UBERON:0000982!1.04e-09!5;UBERON:0004770!1.04e-09!5;UBERON:0000043!2.27e-09!3;UBERON:0001443!1.00e-08!11;UBERON:0002384!3.30e-08!375;UBERON:0002097!3.45e-08!40;UBERON:0002199!5.77e-07!45;UBERON:0002416!5.77e-07!45;UBERON:0000310!6.50e-07!10 | ||
|ontology_enrichment_uberon_v019=UBERON:0004457;4.72e-23;9!UBERON:0000042;4.72e-23;9!UBERON:0003688;7.66e-13;6!UBERON:0002358;7.66e-13;6!UBERON:0003684;7.66e-13;6!UBERON:0001178;7.66e-13;6!UBERON:0006915;1.71e-12;3!UBERON:0007616;1.71e-12;3!UBERON:0002217;1.71e-12;3!UBERON:0002018;1.71e-12;3!UBERON:0007846;1.86e-12;3!UBERON:0000043;1.86e-12;3!UBERON:0007845;1.86e-12;3!UBERON:0004905;4.10e-10;8!UBERON:0000982;4.10e-10;8!UBERON:0004770;4.10e-10;8!UBERON:0001136;5.30e-10;1!UBERON:0001343;5.30e-10;1!UBERON:0004910;5.30e-10;1!UBERON:0004813;5.30e-10;1!UBERON:0007195;1.61e-09;1!UBERON:0000310;2.61e-08;10!UBERON:0001443;1.35e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004457,2.56e-17,12;UBERON:0000042,2.56e-17,12;UBERON:0003688,7.06e-13,6;UBERON:0002358,7.06e-13,6;UBERON:0003684,7.06e-13,6;UBERON:0001178,7.06e-13,6;UBERON:0006915,1.62e-12,3;UBERON:0007616,1.62e-12,3;UBERON:0002217,1.62e-12,3;UBERON:0002018,1.62e-12,3;UBERON:0007846,1.81e-12,3;UBERON:0000043,1.81e-12,3;UBERON:0007845,1.81e-12,3;UBERON:0004905,4.23e-10,8;UBERON:0000982,4.23e-10,8;UBERON:0004770,4.23e-10,8;UBERON:0001136,5.31e-10,1;UBERON:0001343,5.31e-10,1;UBERON:0004910,5.31e-10,1;UBERON:0005154,5.31e-10,1;UBERON:0005295,5.31e-10,1;UBERON:0004813,5.31e-10,1;UBERON:0005297,5.31e-10,1;UBERON:0005294,5.31e-10,1;UBERON:0010141,5.31e-10,1;UBERON:0005891,5.31e-10,1;UBERON:0007195,2.67e-09,1;UBERON:0000310,2.71e-08,10;UBERON:0001443,1.40e-07,11 | |||
|phase1_expression=0.181678379270557,0.856402095563933,0.140954404095971,0,0.446961094427288,0.872338524100369,0,0,0,0,0,0,0,0.866364470720326,1.32558950291166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44575660953827,1.50401373190767,2.89693037921647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98788780678127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0.901428353439581,0,0.179389635688862,0.85422955527427,1.27159140695737,0,0.515262646192195,0.515281080091258,0.558350568994769,0.506328996723799,1.26668106709558,0.504867548488229,0.644349290496095,0,0,0.403008392910561,0.847802961552438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.531876233169741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0.24538298343828,0,0.542530047399471,0,0,0,0,0,0,0,0.664225598535437,0.368738337083406,0,0,0,0,0,0,0,0,0,5.21026396419431,3.99001130548962,2.24528075546459,1.15325234330131,1.53512174720011,1.76939313257968,1.48418066444991,0,0,0,0,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0,0,0,3.21367859688319,0.386682873168488,0,0.15350367472613,0,0,0.290033387828457,0,0.623224249527161,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0.359744915166629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.2442428472645,2.63435914367922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.57979048707425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298509605773748,0.701139929541673,0,0.189403005275089,0.50313580350515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71697852591396,1.6837474438296,0,0,0,0,0.453411851024545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954013051960256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0.381382095467167,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118193840883968,0,0,0,0,0,0,0,0,0,0,0,0.801711364730253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.0586880643807,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60396512716726,0.462175628631418,5.62414530760926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | |phase1_expression=0.181678379270557,0.856402095563933,0.140954404095971,0,0.446961094427288,0.872338524100369,0,0,0,0,0,0,0,0.866364470720326,1.32558950291166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44575660953827,1.50401373190767,2.89693037921647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98788780678127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0.901428353439581,0,0.179389635688862,0.85422955527427,1.27159140695737,0,0.515262646192195,0.515281080091258,0.558350568994769,0.506328996723799,1.26668106709558,0.504867548488229,0.644349290496095,0,0,0.403008392910561,0.847802961552438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.531876233169741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0.24538298343828,0,0.542530047399471,0,0,0,0,0,0,0,0.664225598535437,0.368738337083406,0,0,0,0,0,0,0,0,0,5.21026396419431,3.99001130548962,2.24528075546459,1.15325234330131,1.53512174720011,1.76939313257968,1.48418066444991,0,0,0,0,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0,0,0,3.21367859688319,0.386682873168488,0,0.15350367472613,0,0,0.290033387828457,0,0.623224249527161,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0.359744915166629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.2442428472645,2.63435914367922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.57979048707425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298509605773748,0.701139929541673,0,0.189403005275089,0.50313580350515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71697852591396,1.6837474438296,0,0,0,0,0.453411851024545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954013051960256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0.381382095467167,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118193840883968,0,0,0,0,0,0,0,0,0,0,0,0.801711364730253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.0586880643807,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60396512716726,0.462175628631418,5.62414530760926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:200452510..200452521,- | |short_description=p@chr1:200452510..200452521,- | ||
}} | }} |
Latest revision as of 02:01, 28 July 2015
Short description: | p@chr1:200452510..200452521, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:200452510..200452521, - |
Coexpression cluster: | C1842_Preadipocyte_epithelioid_Synoviocyte_tenocyte_renal_Fibroblast_spindle |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 2.89e-33 | 12 |
preadipocyte of the breast | 2.26e-26 | 3 |
omentum preadipocyte | 3.97e-25 | 3 |
GAG secreting cell | 2.72e-23 | 9 |
carbohydrate secreting cell | 2.72e-23 | 9 |
stromal cell | 4.42e-14 | 28 |
extracellular matrix secreting cell | 6.13e-14 | 15 |
chondroblast | 4.88e-13 | 6 |
chondrocyte | 4.88e-13 | 6 |
synovial cell | 1.62e-12 | 3 |
fibrocyte | 1.81e-12 | 3 |
tendon cell | 1.81e-12 | 3 |
fibroblast | 1.93e-11 | 76 |
androgen binding protein secreting cell | 5.31e-10 | 1 |
seminiferous tubule epithelial cell | 5.31e-10 | 1 |
Sertoli cell | 5.31e-10 | 1 |
perirenal preadipocyte | 1.62e-09 | 1 |
secretory cell | 5.30e-08 | 36 |
Ontology term | p-value | n |
---|---|---|
cavity lining | 2.56e-17 | 12 |
serous membrane | 2.56e-17 | 12 |
omentum | 7.06e-13 | 6 |
peritoneum | 7.06e-13 | 6 |
abdominal cavity | 7.06e-13 | 6 |
visceral peritoneum | 7.06e-13 | 6 |
stratified squamous epithelium | 1.62e-12 | 3 |
layer of synovial tissue | 1.62e-12 | 3 |
synovial joint | 1.62e-12 | 3 |
synovial membrane of synovial joint | 1.62e-12 | 3 |
dense regular connective tissue | 1.81e-12 | 3 |
tendon | 1.81e-12 | 3 |
regular connective tissue | 1.81e-12 | 3 |
articulation | 4.23e-10 | 8 |
skeletal joint | 4.23e-10 | 8 |
articular system | 4.23e-10 | 8 |
mesothelium | 5.31e-10 | 1 |
seminiferous tubule of testis | 5.31e-10 | 1 |
epithelium of male gonad | 5.31e-10 | 1 |
epithelial cord | 5.31e-10 | 1 |
sex cord | 5.31e-10 | 1 |
seminiferous tubule epithelium | 5.31e-10 | 1 |
testis sex cord | 5.31e-10 | 1 |
genital ridge | 5.31e-10 | 1 |
primitive sex cord of indifferent gonad | 5.31e-10 | 1 |
coelomic epithelium | 5.31e-10 | 1 |
stroma of bone marrow | 2.67e-09 | 1 |
breast | 2.71e-08 | 10 |
chest | 1.40e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
spindle cell sarcoma | 5.79e-10 | 1 |
epithelioid sarcoma | 8.17e-10 | 1 |
peripheral primitive neuroectodermal tumor | 9.70e-10 | 1 |