FFCP PHASE1:Hg19::chr12:122239842..122239860,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=447bp_to_ENST00000543167_5end | |association_with_transcript=447bp_to_ENST00000543167_5end | ||
|cluster_id=chr12:122239842..122239860,- | |||
|coexpression_cluster_id=C18 | |coexpression_cluster_id=C18 | ||
|description=CAGE_peak_1_at_ENST00000543167_5end | |description=CAGE_peak_1_at_ENST00000543167_5end | ||
|id=chr12:122239842..122239860,- | |id=chr12:122239842..122239860,- | ||
|ontology_enrichment_celltype=CL:0000791;3.29e-33;18!CL:0000789;3.29e-33;18!CL:0002419;3.29e-33;18!CL:0000084;3.05e-25;25!CL:0002139;1.65e-23;24!CL:0000625;2.24e-23;11!CL:0000071;3.74e-20;18!CL:0000115;1.21e-19;36!CL:0000624;1.04e-13;6!CL:1000413;2.69e-12;9!CL:0002078;3.13e-12;45!CL:0000542;1.46e-11;53!CL:0000213;3.94e-08;58!CL:0000215;3.94e-08;58!CL:0000898;6.16e-08;3!CL:0002544;1.24e-07;6!CL:0000226;5.83e-07;3!CL:0000842;5.83e-07;3 | |ontology_enrichment_celltype=CL:0002139!1.54e-13!24;CL:0000791!1.87e-13!18;CL:0000789!1.87e-13!18;CL:0002420!1.87e-13!18;CL:0002419!1.87e-13!18;CL:0000790!1.87e-13!18;CL:0000084!4.43e-13!25;CL:0000827!4.43e-13!25;CL:0000115!1.35e-11!35;CL:0000542!1.94e-11!53;CL:0000051!1.94e-11!53;CL:0000838!3.86e-11!52;CL:0000071!1.36e-10!18;CL:0002546!1.36e-10!18;CL:0000625!4.32e-10!11;CL:0002078!1.63e-07!44;CL:0000738!2.89e-07!140 | ||
| | |ontology_enrichment_celltype_v019=CL:0000791;3.29e-33;18!CL:0000789;3.29e-33;18!CL:0002419;3.29e-33;18!CL:0000084;3.05e-25;25!CL:0002139;1.65e-23;24!CL:0000625;2.24e-23;11!CL:0000071;3.74e-20;18!CL:0000115;1.21e-19;36!CL:0000624;1.04e-13;6!CL:1000413;2.69e-12;9!CL:0002078;3.13e-12;45!CL:0000542;1.46e-11;53!CL:0000213;3.94e-08;58!CL:0000215;3.94e-08;58!CL:0000898;6.16e-08;3!CL:0002544;1.24e-07;6!CL:0000226;5.83e-07;3!CL:0000842;5.83e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.25e-33,18;CL:0000789,2.25e-33,18;CL:0002420,2.25e-33,18;CL:0002419,2.25e-33,18;CL:0000790,2.25e-33,18;CL:0000084,2.46e-25,25;CL:0000827,2.46e-25,25;CL:0000115,1.00e-23,36;CL:0000625,1.61e-23,11;CL:0002139,2.72e-23,24;CL:0000071,2.77e-20,18;CL:0002546,2.77e-20,18;CL:0000838,1.93e-19,52;CL:0000542,6.20e-19,53;CL:0000051,6.20e-19,53;CL:0002078,1.17e-17,45;CL:0000624,9.70e-14,6;CL:1000413,1.39e-12,9;CL:0000213,2.72e-12,58;CL:0000215,2.72e-12,58;CL:0000898,5.80e-08,3;CL:0002544,8.93e-08,6;CL:0000738,3.15e-07,136;CL:0000226,4.34e-07,3;CL:0000842,4.34e-07,3;CL:0002087,4.59e-07,115 | |||
|ontology_enrichment_development_v019=CL:0000790;3.29e-33;18!CL:0002546;3.74e-20;18!CL:0000051;1.46e-11;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0004638;3.74e-20;18!UBERON:0001986;3.74e-20;18!UBERON:0004852;3.74e-20;18!UBERON:0000487;8.57e-16;22!UBERON:0000178;1.08e-15;15!UBERON:0000179;1.08e-15;15!UBERON:0000463;1.08e-15;15!UBERON:0006914;1.89e-13;25!UBERON:0003915;2.69e-12;9!UBERON:0004700;2.69e-12;9!UBERON:0001917;2.69e-12;9!UBERON:0002193;1.25e-10;42!UBERON:0002390;2.18e-09;32!UBERON:0000490;1.28e-08;33 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!1.36e-10!18;UBERON:0004638!1.36e-10!18;UBERON:0004852!1.36e-10!18;UBERON:0000178!1.48e-09!15;UBERON:0000179!1.48e-09!15;UBERON:0000463!1.48e-09!15;UBERON:0000487!3.38e-08!22;UBERON:0004535!3.31e-07!110;UBERON:0001009!5.42e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;3.74e-20;18!UBERON:0001986;3.74e-20;18!UBERON:0004852;3.74e-20;18!UBERON:0000487;8.57e-16;22!UBERON:0000178;1.08e-15;15!UBERON:0000179;1.08e-15;15!UBERON:0000463;1.08e-15;15!UBERON:0006914;1.89e-13;25!UBERON:0003915;2.69e-12;9!UBERON:0004700;2.69e-12;9!UBERON:0001917;2.69e-12;9!UBERON:0002193;1.25e-10;42!UBERON:0002390;2.18e-09;32!UBERON:0000490;1.28e-08;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,2.77e-20,18;UBERON:0001986,2.77e-20,18;UBERON:0004852,2.77e-20,18;UBERON:0000487,6.75e-16,22;UBERON:0000178,9.02e-16,15;UBERON:0000179,9.02e-16,15;UBERON:0000463,9.02e-16,15;UBERON:0006914,1.54e-13,25;UBERON:0003915,1.39e-12,9;UBERON:0004700,1.39e-12,9;UBERON:0001917,1.39e-12,9;UBERON:0004535,1.08e-11,109;UBERON:0001009,3.79e-11,112;UBERON:0000055,1.22e-08,68;UBERON:0007500,6.18e-07,59;UBERON:0001981,6.18e-07,59;UBERON:0004537,6.18e-07,59;UBERON:0006965,6.18e-07,59;UBERON:0002049,7.31e-07,78;UBERON:0007798,7.31e-07,78 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0,0,0.446961094427288,0,0,0.631719873426831,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0.286235987131057,0.273748850145768,0,0.152826811495903,0.164201178899891,0,0.393364276848904,1.15148819429164,0.309632246632152,0.919421224478927,0,0,0,0.284338464974843,0,0.553995408531877,0.200544447470142,0.217010870715852,0,0,0,0.145398238779565,0.377875943688809,0,0.464858073811369,0,0,0.28769239232215,0.256160706529101,0,0.344745680736619,0,0,0.188242339542605,0.272906150057846,0,0,0.320929027076094,0,0,0.199463657621632,0,0.290209238628584,0,0,0,0,0.217188844705117,0,0.368277635987565,0,0,0,0.209658645508376,0.112328631146495,0,0.16072558669708,0,0.39783335439818,0,1.75996244461323,0,0.889509253863555,0,2.00197993518006,1.14950487990897,0.661044872784862,0,1.70763890732835,0,0,1.32171328579026,0,0.526768169550154,6.88484195398416,2.35806457649499,4.5232329779892,6.18590032945509,7.49621213257258,17.0441210064504,5.84480185223734,3.56513462032555,5.89211814949674,6.86755073209225,10.5613506868356,5.50792674820403,5.33243324995501,3.28875809207352,3.03985019564433,2.31842468588042,7.56261472126508,12.0393372640371,10.4535523804977,1.58633079776593,8.43085085924227,8.59068613706575,8.6026695286631,7.96413535810242,7.1619179924206,6.65316431113862,5.27012916772205,9.08704939196371,4.99722906209383,8.05042656949657,4.10563998460523,3.83052812126992,1.87208137048455,3.47578569318718,0,0.670700859703636,0,0,0,0,0,0.486634870302636,0.189069634328136,0,0,0.261958150995425,0,0,0,0.174129737299267,0,0.715471872916026,0,0.371457501329565,1.39133685156694,1.72046919021225,1.38856200643038,1.69592382577203,1.67799774483962,1.6507082516404,2.08994966536811,1.03366703667732,1.06729878806013,1.33888245105868,1.20848795132744,1.52054421143703,3.90499292077071,1.47065232138347,0,1.87529429396568,1.12264686313085,1.12611480483322,1.53316637465883,0.949265659568129,0.732806975721629,0,0,0,0,0.25326102332916,0.397227542439656,0.286836620748814,0,0,0,0.49333509683432,0,0.67355336034844,0.817309515567294,0,0,0,0,0.570471821544449,0,0,0.161872944368132,0,0,0,0,0,0.247266929278557,0,0,0.168336113954066,0,0,0,0,0,0.226864366320042,0,0,0,0.300091096084402,0.103052529238439,0,0,0,0.0974370051611986,0,0.184099797284599,0,0.355009592516614,0,0,0,0,0,0.243947412259191,0.132529768321485,0.116193942869518,0.207322110030741,0,0,0,0.643240938192885,0,0,0.721879481669586,0,0,0.241011029883482,0,0,0,0,0,0,3.69077727312324,1.40241773803446,0,0,0,0,0,1.32438929824395,0.122988438543114,0,0.109750285408626,0,0,0,0,0,0,0,0,0.721832238805369,1.38895653772983,0.380508304469197,0,0.858486162094873,0,0,0,0.93733833986777,0,0,0,0,0,2.46331618947972,0.704387472105808,0.414656231081544,1.29707958075265,0.37872730027914,0.126995788584338,0,0,0,0,0,0.285826432630578,0,0,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0.871533458600294,0.099972991182057,0,0,0,0.239624855491583,0,0,0.144781306667579,0,0,0,1.97030760201927,1.50939302401662,2.18183161675572,0,0,1.54657762555539,0.502548796003046,0,0,0,0,0,0,0,0.623912584592421,0,0.157702415033935,0,0,0,0,0,0,0,0.195801157462741,0,2.48121631347465,2.80428461064202,2.45473382947922,0,0,0.30239029332968,0,0.306923946576125,0,0.128139149255701,0,0,0,0,0,0,0,0,0.120859449591622,0.802025881213139,0,0,0,0.262248829918848,0,0,0,0,0.105551628892876,1.13733384070897,1.19065593693561,0.863663664408557,4.62681758070868,0,0,0,0,0,0.657779629937804,0.261435451024901,0,0,0,0.103041011647722,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0.0890320356467374,0,0,1.14851441245126,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0.190630193923825,0,0,0,1.56989728039846,0,0,0.117812402345686,0,0,0.421258456238981,0,0.731140468893853,0,0,0,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0,0,0,0,0,0.192444225451024,0,1.08890984861323,0.282431402330337,0,1.68471475667626,0,0,5.58192370155386,3.82318603571188,5.12682468456746,5.24109906007136,2.46817363851717,4.53931317834902,5.40031437238115,3.17250070517708,0,0,0,0.371606350251437,0.28853842595289,0.497992903438899,0.159426272728822,0.997896857164083,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0.343505344755765,0.307240764308458,0,0,0,0.278406173895242,0,0,0.66614393599564,0,0,0.146508179271894,0.121360521749513,0,0,0,0,0,0,0.422008249231538,0,0,0.422250816255987,0.398495976502139,2.21027132424918,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,1.99613798001194,0,0.0874599999961957,0,0.227586896570999,0.254253650292766,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0.183195186803725,0,2.04386596391473,0.627921025580099,0.166211681900156,0,0,0,0.189753732724185,0.635746315921515,0,0,0,0,0,0.0884575645033392,0.611030144933625,0.593042257361244,0.988511511572023,0.313265848516366,0.202203398942031,1.60515529459758,0.234264445725339,0.91227394607833,0.391329237864179,0,0.789168805698781,1.20990716048664,1.83643656978294,0.947798694427319,0,0.103688191397247,0,0,0,0,0,0,0,0,0.0870592065804026,0.17472666824203,0.171986032471617,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| ||
|short_description=p1@ENST00000543167 | |short_description=p1@ENST00000543167 | ||
}} | }} |
Latest revision as of 06:00, 24 July 2015
Short description: | p1@ENST00000543167 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000543167_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 447bp_to_ENST00000543167_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.25e-33 | 18 |
alpha-beta T cell | 2.25e-33 | 18 |
immature T cell | 2.25e-33 | 18 |
mature T cell | 2.25e-33 | 18 |
immature alpha-beta T cell | 2.25e-33 | 18 |
T cell | 2.46e-25 | 25 |
pro-T cell | 2.46e-25 | 25 |
endothelial cell | 1.00e-23 | 36 |
CD8-positive, alpha-beta T cell | 1.61e-23 | 11 |
endothelial cell of vascular tree | 2.72e-23 | 24 |
blood vessel endothelial cell | 2.77e-20 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.77e-20 | 18 |
lymphoid lineage restricted progenitor cell | 1.93e-19 | 52 |
lymphocyte | 6.20e-19 | 53 |
common lymphoid progenitor | 6.20e-19 | 53 |
meso-epithelial cell | 1.17e-17 | 45 |
CD4-positive, alpha-beta T cell | 9.70e-14 | 6 |
endothelial cell of artery | 1.39e-12 | 9 |
lining cell | 2.72e-12 | 58 |
barrier cell | 2.72e-12 | 58 |
naive T cell | 5.80e-08 | 3 |
aortic endothelial cell | 8.93e-08 | 6 |
leukocyte | 3.15e-07 | 136 |
single nucleate cell | 4.34e-07 | 3 |
mononuclear cell | 4.34e-07 | 3 |
nongranular leukocyte | 4.59e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 2.77e-20 | 18 |
endothelium | 2.77e-20 | 18 |
cardiovascular system endothelium | 2.77e-20 | 18 |
simple squamous epithelium | 6.75e-16 | 22 |
blood | 9.02e-16 | 15 |
haemolymphatic fluid | 9.02e-16 | 15 |
organism substance | 9.02e-16 | 15 |
squamous epithelium | 1.54e-13 | 25 |
endothelial tube | 1.39e-12 | 9 |
arterial system endothelium | 1.39e-12 | 9 |
endothelium of artery | 1.39e-12 | 9 |
cardiovascular system | 1.08e-11 | 109 |
circulatory system | 3.79e-11 | 112 |
vessel | 1.22e-08 | 68 |
epithelial tube open at both ends | 6.18e-07 | 59 |
blood vessel | 6.18e-07 | 59 |
blood vasculature | 6.18e-07 | 59 |
vascular cord | 6.18e-07 | 59 |
vasculature | 7.31e-07 | 78 |
vascular system | 7.31e-07 | 78 |