FFCP PHASE1:Hg19::chr9:137218362..137218385,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6256 | |EntrezGene=6256 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10477 | |HGNC=10477 | ||
|TSSclassifier=strong | |||
|UniProt=P19793 | |UniProt=P19793 | ||
|association_with_transcript=-40bp_to_ENST00000481739_5end | |association_with_transcript=-40bp_to_ENST00000481739_5end | ||
|cluster_id=chr9:137218362..137218385,+ | |||
|coexpression_cluster_id=C4808 | |coexpression_cluster_id=C4808 | ||
|description=CAGE_peak_4_at_RXRA_5end | |description=CAGE_peak_4_at_RXRA_5end | ||
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|ontology_enrichment_celltype=CL:0000766!9.23e-26!76;CL:0002194!4.02e-22!63;CL:0000576!4.02e-22!63;CL:0000040!4.02e-22!63;CL:0000559!4.02e-22!63;CL:0000839!1.68e-21!70;CL:0002057!3.71e-21!42;CL:0002009!1.99e-20!65;CL:0000557!3.77e-19!71;CL:0000860!1.07e-18!45;CL:0000763!3.11e-12!112;CL:0000049!3.11e-12!112 | |ontology_enrichment_celltype=CL:0000766!9.23e-26!76;CL:0002194!4.02e-22!63;CL:0000576!4.02e-22!63;CL:0000040!4.02e-22!63;CL:0000559!4.02e-22!63;CL:0000839!1.68e-21!70;CL:0002057!3.71e-21!42;CL:0002009!1.99e-20!65;CL:0000557!3.77e-19!71;CL:0000860!1.07e-18!45;CL:0000763!3.11e-12!112;CL:0000049!3.11e-12!112 | ||
|ontology_enrichment_celltype_v019=CL:0000860;6.14e-17;33!CL:0002057;6.14e-17;33!CL:0000473;6.33e-17;39!CL:0000234;6.33e-17;39!CL:0000576;5.43e-16;48!CL:0000766;5.05e-14;69 | |ontology_enrichment_celltype_v019=CL:0000860;6.14e-17;33!CL:0002057;6.14e-17;33!CL:0000473;6.33e-17;39!CL:0000234;6.33e-17;39!CL:0000576;5.43e-16;48!CL:0000766;5.05e-14;69 | ||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.70e-29,72;CL:0002194,8.48e-26,59;CL:0000576,8.48e-26,59;CL:0000040,8.48e-26,59;CL:0000559,8.48e-26,59;CL:0000839,7.53e-25,66;CL:0000473,7.72e-25,48;CL:0000234,7.72e-25,48;CL:0002009,9.41e-24,61;CL:0000557,2.35e-22,67;CL:0000860,4.65e-22,42;CL:0002057,4.65e-22,42;CL:0000763,4.96e-14,108;CL:0000049,4.96e-14,108 | |||
|ontology_enrichment_development_v019=CL:0002057;2.80e-16;42 | |ontology_enrichment_development_v019=CL:0002057;2.80e-16;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!6.29e-17!80;UBERON:0000468!4.48e-16!659;UBERON:0002390!6.19e-16!102;UBERON:0003061!6.19e-16!102;UBERON:0002405!9.65e-16!115;UBERON:0001474!1.01e-15!86;UBERON:0000467!7.67e-15!625;UBERON:0007023!1.01e-14!115;UBERON:0002193!1.20e-14!112;UBERON:0000480!1.75e-14!626;UBERON:0004765!5.18e-14!101;UBERON:0001434!5.18e-14!101;UBERON:0000923!2.86e-13!604;UBERON:0005291!2.86e-13!604;UBERON:0006598!2.86e-13!604;UBERON:0002532!2.86e-13!604;UBERON:0002050!3.17e-13!605;UBERON:0005423!3.17e-13!605;UBERON:0000922!4.45e-13!612;UBERON:0000062!3.39e-12!511;UBERON:0002204!2.09e-10!167;UBERON:0003081!7.83e-10!216;UBERON:0000926!4.99e-09!448;UBERON:0004120!4.99e-09!448;UBERON:0006603!4.99e-09!448 | |ontology_enrichment_uberon=UBERON:0002371!6.29e-17!80;UBERON:0000468!4.48e-16!659;UBERON:0002390!6.19e-16!102;UBERON:0003061!6.19e-16!102;UBERON:0002405!9.65e-16!115;UBERON:0001474!1.01e-15!86;UBERON:0000467!7.67e-15!625;UBERON:0007023!1.01e-14!115;UBERON:0002193!1.20e-14!112;UBERON:0000480!1.75e-14!626;UBERON:0004765!5.18e-14!101;UBERON:0001434!5.18e-14!101;UBERON:0000923!2.86e-13!604;UBERON:0005291!2.86e-13!604;UBERON:0006598!2.86e-13!604;UBERON:0002532!2.86e-13!604;UBERON:0002050!3.17e-13!605;UBERON:0005423!3.17e-13!605;UBERON:0000922!4.45e-13!612;UBERON:0000062!3.39e-12!511;UBERON:0002204!2.09e-10!167;UBERON:0003081!7.83e-10!216;UBERON:0000926!4.99e-09!448;UBERON:0004120!4.99e-09!448;UBERON:0006603!4.99e-09!448 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.03e-20,76;UBERON:0002390,3.99e-19,98;UBERON:0003061,3.99e-19,98;UBERON:0001474,6.84e-18,82;UBERON:0002193,1.06e-17,108;UBERON:0002405,2.18e-15,93;UBERON:0001434,2.86e-15,100;UBERON:0004765,7.14e-15,90;UBERON:0007023,2.97e-14,114;UBERON:0000923,1.31e-12,560;UBERON:0010316,1.31e-12,560;UBERON:0005291,1.31e-12,560;UBERON:0006598,1.31e-12,560;UBERON:0010317,1.31e-12,560;UBERON:0002532,1.31e-12,560;UBERON:0002050,7.11e-12,564;UBERON:0003081,2.38e-11,203;UBERON:0002204,3.50e-10,167;UBERON:0005423,5.69e-10,581;UBERON:0000922,1.61e-09,592;UBERON:0000926,2.14e-08,315;UBERON:0004120,2.14e-08,315;UBERON:0006603,2.14e-08,315 | |||
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| ||
|short_description=p4@RXRA | |short_description=p4@RXRA | ||
}} | }} |
Latest revision as of 08:17, 16 September 2015
Short description: | p4@RXRA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RXRA_5end |
Coexpression cluster: | C4808_Hepatocyte_keratoacanthoma_salivary_breast_liver_oral_Mesenchymal |
Association with transcript: | -40bp_to_ENST00000481739_5end |
EntrezGene: | RXRA |
HGNC: | 10477 |
UniProt: | P19793 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.70e-29 | 72 |
monopoietic cell | 8.48e-26 | 59 |
monocyte | 8.48e-26 | 59 |
monoblast | 8.48e-26 | 59 |
promonocyte | 8.48e-26 | 59 |
myeloid lineage restricted progenitor cell | 7.53e-25 | 66 |
defensive cell | 7.72e-25 | 48 |
phagocyte | 7.72e-25 | 48 |
macrophage dendritic cell progenitor | 9.41e-24 | 61 |
granulocyte monocyte progenitor cell | 2.35e-22 | 67 |
classical monocyte | 4.65e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.65e-22 | 42 |
myeloid cell | 4.96e-14 | 108 |
common myeloid progenitor | 4.96e-14 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 9.03e-20 | 76 |
hematopoietic system | 3.99e-19 | 98 |
blood island | 3.99e-19 | 98 |
bone element | 6.84e-18 | 82 |
hemolymphoid system | 1.06e-17 | 108 |
immune system | 2.18e-15 | 93 |
skeletal system | 2.86e-15 | 100 |
skeletal element | 7.14e-15 | 90 |
adult organism | 2.97e-14 | 114 |
germ layer | 1.31e-12 | 560 |
germ layer / neural crest | 1.31e-12 | 560 |
embryonic tissue | 1.31e-12 | 560 |
presumptive structure | 1.31e-12 | 560 |
germ layer / neural crest derived structure | 1.31e-12 | 560 |
epiblast (generic) | 1.31e-12 | 560 |
embryonic structure | 7.11e-12 | 564 |
lateral plate mesoderm | 2.38e-11 | 203 |
musculoskeletal system | 3.50e-10 | 167 |
developing anatomical structure | 5.69e-10 | 581 |
embryo | 1.61e-09 | 592 |
mesoderm | 2.14e-08 | 315 |
mesoderm-derived structure | 2.14e-08 | 315 |
presumptive mesoderm | 2.14e-08 | 315 |