FFCP PHASE1:Hg19::chr20:35580173..35580200,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:35580173..35580200,-
|short_description=p4@SAMHD1
|description=CAGE_peak_4_at_SAMHD1_5end
|association_with_transcript=0bp_to_uc002xgh.1_5end
|EntrezGene...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=25939 | |EntrezGene=25939 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15925 | |HGNC=15925 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y3Z3 | |UniProt=Q9Y3Z3 | ||
|association_with_transcript=0bp_to_uc002xgh.1_5end | |||
|cluster_id=chr20:35580173..35580200,- | |||
|coexpression_cluster_id=C936 | |||
|description=CAGE_peak_4_at_SAMHD1_5end | |||
|id=chr20:35580173..35580200,- | |||
|ontology_enrichment_celltype=CL:0002009!1.39e-31!65;CL:0002194!3.22e-31!63;CL:0000576!3.22e-31!63;CL:0000040!3.22e-31!63;CL:0000559!3.22e-31!63;CL:0000557!4.82e-31!71;CL:0000766!5.84e-31!76;CL:0002087!7.53e-29!119;CL:0000738!7.71e-29!140;CL:0000839!1.51e-27!70;CL:0002031!1.81e-26!124;CL:0002057!2.32e-25!42;CL:0000860!2.01e-23!45;CL:0000037!1.09e-20!172;CL:0000566!1.09e-20!172;CL:0002032!1.15e-18!165;CL:0000837!1.15e-18!165;CL:0000988!2.69e-18!182;CL:0000763!4.85e-17!112;CL:0000049!4.85e-17!112;CL:0000791!1.88e-07!18;CL:0000789!1.88e-07!18;CL:0002420!1.88e-07!18;CL:0002419!1.88e-07!18;CL:0000790!1.88e-07!18;CL:0002393!6.71e-07!9;CL:0002397!6.71e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.30e-21;39!CL:0000234;1.30e-21;39!CL:0000576;2.76e-21;48!CL:0000860;3.59e-21;33!CL:0002057;3.59e-21;33!CL:0000766;8.17e-17;69!CL:0002087;1.21e-09;104!CL:0000791;1.71e-08;18!CL:0000789;1.71e-08;18!CL:0002419;1.71e-08;18!CL:0000763;3.02e-08;100!CL:0000738;8.49e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,5.78e-40,61;CL:0002194,1.37e-39,59;CL:0000576,1.37e-39,59;CL:0000040,1.37e-39,59;CL:0000559,1.37e-39,59;CL:0000766,5.18e-39,72;CL:0000557,8.25e-39,67;CL:0000839,2.33e-35,66;CL:0000738,4.50e-35,136;CL:0002087,2.53e-34,115;CL:0000473,2.66e-34,48;CL:0000234,2.66e-34,48;CL:0002031,1.42e-31,120;CL:0000860,1.06e-29,42;CL:0002057,1.06e-29,42;CL:0000037,7.15e-28,168;CL:0002032,4.51e-25,161;CL:0000837,4.51e-25,161;CL:0000763,1.37e-24,108;CL:0000049,1.37e-24,108;CL:0000988,2.40e-24,177;CL:0000791,1.58e-08,18;CL:0000789,1.58e-08,18;CL:0002420,1.58e-08,18;CL:0002419,1.58e-08,18;CL:0000790,1.58e-08,18;CL:0002393,7.10e-08,9;CL:0002397,7.10e-08,9 | |||
|ontology_enrichment_development_v019=CL:0002057;1.87e-21;42!CL:0000790;1.71e-08;18!CL:0000049;1.39e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!9.60e-31!102;UBERON:0003061!9.60e-31!102;UBERON:0002193!3.42e-28!112;UBERON:0002371!4.14e-25!80;UBERON:0007023!1.08e-24!115;UBERON:0001474!5.69e-21!86;UBERON:0002405!3.51e-20!115;UBERON:0004765!7.56e-17!101;UBERON:0001434!7.56e-17!101;UBERON:0002204!9.81e-08!167;UBERON:0003081!1.68e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.16e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.82e-39,98;UBERON:0003061,3.82e-39,98;UBERON:0002193,1.26e-35,108;UBERON:0002371,2.79e-32,76;UBERON:0002405,5.54e-30,93;UBERON:0007023,6.88e-28,114;UBERON:0001474,2.05e-27,82;UBERON:0004765,1.45e-24,90;UBERON:0001434,1.09e-20,100;UBERON:0003081,1.46e-12,203;UBERON:0002204,1.85e-08,167 | |||
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| ||
|short_description=p4@SAMHD1 | |||
}} | }} |
Latest revision as of 00:30, 16 September 2015
Short description: | p4@SAMHD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SAMHD1_5end |
Coexpression cluster: | C936_CD4_CD14_granulocyte_CD14CD16_CD8_Dendritic_Hair |
Association with transcript: | 0bp_to_uc002xgh.1_5end |
EntrezGene: | SAMHD1 |
HGNC: | 15925 |
UniProt: | Q9Y3Z3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 5.78e-40 | 61 |
monopoietic cell | 1.37e-39 | 59 |
monocyte | 1.37e-39 | 59 |
monoblast | 1.37e-39 | 59 |
promonocyte | 1.37e-39 | 59 |
myeloid leukocyte | 5.18e-39 | 72 |
granulocyte monocyte progenitor cell | 8.25e-39 | 67 |
myeloid lineage restricted progenitor cell | 2.33e-35 | 66 |
leukocyte | 4.50e-35 | 136 |
nongranular leukocyte | 2.53e-34 | 115 |
defensive cell | 2.66e-34 | 48 |
phagocyte | 2.66e-34 | 48 |
hematopoietic lineage restricted progenitor cell | 1.42e-31 | 120 |
classical monocyte | 1.06e-29 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.06e-29 | 42 |
hematopoietic stem cell | 7.15e-28 | 168 |
hematopoietic oligopotent progenitor cell | 4.51e-25 | 161 |
hematopoietic multipotent progenitor cell | 4.51e-25 | 161 |
myeloid cell | 1.37e-24 | 108 |
common myeloid progenitor | 1.37e-24 | 108 |
hematopoietic cell | 2.40e-24 | 177 |
mature alpha-beta T cell | 1.58e-08 | 18 |
alpha-beta T cell | 1.58e-08 | 18 |
immature T cell | 1.58e-08 | 18 |
mature T cell | 1.58e-08 | 18 |
immature alpha-beta T cell | 1.58e-08 | 18 |
intermediate monocyte | 7.10e-08 | 9 |
CD14-positive, CD16-positive monocyte | 7.10e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.82e-39 | 98 |
blood island | 3.82e-39 | 98 |
hemolymphoid system | 1.26e-35 | 108 |
bone marrow | 2.79e-32 | 76 |
immune system | 5.54e-30 | 93 |
adult organism | 6.88e-28 | 114 |
bone element | 2.05e-27 | 82 |
skeletal element | 1.45e-24 | 90 |
skeletal system | 1.09e-20 | 100 |
lateral plate mesoderm | 1.46e-12 | 203 |
musculoskeletal system | 1.85e-08 | 167 |