FFCP PHASE1:Hg19::chr1:153333121..153333180,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:153333121..153333180,+ | |||
|coexpression_cluster_id=C1837 | |coexpression_cluster_id=C1837 | ||
|description=CAGE_peak_at_chr1:153333121..153333180,+ | |description=CAGE_peak_at_chr1:153333121..153333180,+ | ||
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|ontology_enrichment_celltype=CL:0000766!4.53e-49!76;CL:0002057!2.04e-47!42;CL:0002194!4.35e-45!63;CL:0000576!4.35e-45!63;CL:0000040!4.35e-45!63;CL:0000559!4.35e-45!63;CL:0000860!4.07e-43!45;CL:0002009!4.30e-43!65;CL:0000839!1.29e-38!70;CL:0000557!8.52e-38!71;CL:0000763!4.72e-34!112;CL:0000049!4.72e-34!112;CL:0000738!1.47e-25!140;CL:0002087!4.43e-23!119;CL:0000037!8.92e-22!172;CL:0000566!8.92e-22!172;CL:0002032!3.15e-20!165;CL:0000837!3.15e-20!165;CL:0000988!3.01e-19!182;CL:0002031!1.88e-18!124;CL:0000094!2.91e-10!8;CL:0002393!4.15e-09!9;CL:0002397!4.15e-09!9;CL:0002076!1.26e-07!43;CL:0002368!5.58e-07!13;CL:0000081!7.03e-07!11 | |ontology_enrichment_celltype=CL:0000766!4.53e-49!76;CL:0002057!2.04e-47!42;CL:0002194!4.35e-45!63;CL:0000576!4.35e-45!63;CL:0000040!4.35e-45!63;CL:0000559!4.35e-45!63;CL:0000860!4.07e-43!45;CL:0002009!4.30e-43!65;CL:0000839!1.29e-38!70;CL:0000557!8.52e-38!71;CL:0000763!4.72e-34!112;CL:0000049!4.72e-34!112;CL:0000738!1.47e-25!140;CL:0002087!4.43e-23!119;CL:0000037!8.92e-22!172;CL:0000566!8.92e-22!172;CL:0002032!3.15e-20!165;CL:0000837!3.15e-20!165;CL:0000988!3.01e-19!182;CL:0002031!1.88e-18!124;CL:0000094!2.91e-10!8;CL:0002393!4.15e-09!9;CL:0002397!4.15e-09!9;CL:0002076!1.26e-07!43;CL:0002368!5.58e-07!13;CL:0000081!7.03e-07!11 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.22e-59;33!CL:0002057;2.22e-59;33!CL:0000473;8.66e-55;39!CL:0000234;8.66e-55;39!CL:0000576;1.19e-37;48!CL:0000766;8.19e-31;69!CL:0000094;4.28e-16;8!CL:0000763;1.38e-15;100!CL:0002393;1.56e-11;6!CL:0002397;1.56e-11;6!CL:0000081;2.91e-11;11!CL:0002087;1.01e-08;104!CL:0000738;2.07e-08;136!CL:0000235;3.15e-08;6!CL:0000775;4.18e-08;3 | |ontology_enrichment_celltype_v019=CL:0000860;2.22e-59;33!CL:0002057;2.22e-59;33!CL:0000473;8.66e-55;39!CL:0000234;8.66e-55;39!CL:0000576;1.19e-37;48!CL:0000766;8.19e-31;69!CL:0000094;4.28e-16;8!CL:0000763;1.38e-15;100!CL:0002393;1.56e-11;6!CL:0002397;1.56e-11;6!CL:0000081;2.91e-11;11!CL:0002087;1.01e-08;104!CL:0000738;2.07e-08;136!CL:0000235;3.15e-08;6!CL:0000775;4.18e-08;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000473,2.51e-76,48;CL:0000234,2.51e-76,48;CL:0000860,1.57e-69,42;CL:0002057,1.57e-69,42;CL:0000766,1.00e-66,72;CL:0002194,2.84e-58,59;CL:0000576,2.84e-58,59;CL:0000040,2.84e-58,59;CL:0000559,2.84e-58,59;CL:0002009,6.02e-56,61;CL:0000839,9.62e-51,66;CL:0000557,8.54e-50,67;CL:0000763,5.77e-43,108;CL:0000049,5.77e-43,108;CL:0000738,1.48e-32,136;CL:0002087,7.19e-28,115;CL:0000037,1.24e-25,168;CL:0002032,6.64e-25,161;CL:0000837,6.64e-25,161;CL:0000988,1.57e-23,177;CL:0002031,2.19e-23,120;CL:0000094,4.34e-16,8;CL:0000081,2.93e-11,11;CL:0000775,3.95e-08,3;CL:0000235,4.11e-08,6;CL:0002393,1.87e-07,9;CL:0002397,1.87e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;3.84e-50;42!CL:0000049;7.86e-14;108 | |ontology_enrichment_development_v019=CL:0002057;3.84e-50;42!CL:0000049;7.86e-14;108 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.30e-40!102;UBERON:0003061!3.30e-40!102;UBERON:0002193!2.83e-37!112;UBERON:0002371!2.25e-31!80;UBERON:0001474!7.25e-28!86;UBERON:0004765!4.82e-24!101;UBERON:0001434!4.82e-24!101;UBERON:0002405!6.85e-22!115;UBERON:0003081!1.33e-11!216;UBERON:0000178!3.79e-10!15;UBERON:0000179!3.79e-10!15;UBERON:0000463!3.79e-10!15;UBERON:0002204!2.17e-08!167 | |ontology_enrichment_uberon=UBERON:0002390!3.30e-40!102;UBERON:0003061!3.30e-40!102;UBERON:0002193!2.83e-37!112;UBERON:0002371!2.25e-31!80;UBERON:0001474!7.25e-28!86;UBERON:0004765!4.82e-24!101;UBERON:0001434!4.82e-24!101;UBERON:0002405!6.85e-22!115;UBERON:0003081!1.33e-11!216;UBERON:0000178!3.79e-10!15;UBERON:0000179!3.79e-10!15;UBERON:0000463!3.79e-10!15;UBERON:0002204!2.17e-08!167 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.55e-12;15!UBERON:0000179;3.55e-12;15!UBERON:0000463;3.55e-12;15 | |ontology_enrichment_uberon_v019=UBERON:0000178;3.55e-12;15!UBERON:0000179;3.55e-12;15!UBERON:0000463;3.55e-12;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.25e-49,98;UBERON:0003061,3.25e-49,98;UBERON:0002193,5.17e-47,108;UBERON:0002371,2.23e-42,76;UBERON:0001474,2.45e-38,82;UBERON:0002405,8.89e-36,93;UBERON:0004765,1.35e-35,90;UBERON:0001434,9.88e-31,100;UBERON:0003081,6.58e-17,203;UBERON:0002204,3.52e-14,167;UBERON:0000178,3.23e-12,15;UBERON:0000179,3.23e-12,15;UBERON:0000463,3.23e-12,15;UBERON:0000926,5.81e-07,315;UBERON:0004120,5.81e-07,315;UBERON:0006603,5.81e-07,315 | |||
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|short_description=p@chr1:153333121..153333180,+ | |short_description=p@chr1:153333121..153333180,+ | ||
}} | }} |
Latest revision as of 21:41, 27 July 2015
Short description: | p@chr1:153333121..153333180, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:153333121..153333180, + |
Coexpression cluster: | C1837_Neutrophils_Eosinophils_tongue_CD14_esophagus_Whole_blood |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 2.51e-76 | 48 |
phagocyte | 2.51e-76 | 48 |
classical monocyte | 1.57e-69 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.57e-69 | 42 |
myeloid leukocyte | 1.00e-66 | 72 |
monopoietic cell | 2.84e-58 | 59 |
monocyte | 2.84e-58 | 59 |
monoblast | 2.84e-58 | 59 |
promonocyte | 2.84e-58 | 59 |
macrophage dendritic cell progenitor | 6.02e-56 | 61 |
myeloid lineage restricted progenitor cell | 9.62e-51 | 66 |
granulocyte monocyte progenitor cell | 8.54e-50 | 67 |
myeloid cell | 5.77e-43 | 108 |
common myeloid progenitor | 5.77e-43 | 108 |
leukocyte | 1.48e-32 | 136 |
nongranular leukocyte | 7.19e-28 | 115 |
hematopoietic stem cell | 1.24e-25 | 168 |
hematopoietic oligopotent progenitor cell | 6.64e-25 | 161 |
hematopoietic multipotent progenitor cell | 6.64e-25 | 161 |
hematopoietic cell | 1.57e-23 | 177 |
hematopoietic lineage restricted progenitor cell | 2.19e-23 | 120 |
granulocyte | 4.34e-16 | 8 |
blood cell | 2.93e-11 | 11 |
neutrophil | 3.95e-08 | 3 |
macrophage | 4.11e-08 | 6 |
intermediate monocyte | 1.87e-07 | 9 |
CD14-positive, CD16-positive monocyte | 1.87e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.25e-49 | 98 |
blood island | 3.25e-49 | 98 |
hemolymphoid system | 5.17e-47 | 108 |
bone marrow | 2.23e-42 | 76 |
bone element | 2.45e-38 | 82 |
immune system | 8.89e-36 | 93 |
skeletal element | 1.35e-35 | 90 |
skeletal system | 9.88e-31 | 100 |
lateral plate mesoderm | 6.58e-17 | 203 |
musculoskeletal system | 3.52e-14 | 167 |
blood | 3.23e-12 | 15 |
haemolymphatic fluid | 3.23e-12 | 15 |
organism substance | 3.23e-12 | 15 |
mesoderm | 5.81e-07 | 315 |
mesoderm-derived structure | 5.81e-07 | 315 |
presumptive mesoderm | 5.81e-07 | 315 |