FFCP PHASE1:Mm9::chr1:63492416..63492517,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=23792 | |EntrezGene=23792 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=873 | |MCL_coexpression_id=873 | ||
|TSSclassifier=NA | |||
|UniProt=Q9R1V7,Q5SRA0 | |UniProt=Q9R1V7,Q5SRA0 | ||
|association_with_transcript=0bp_to_ENSMUST00000087374,ENSMUST00000114101,ENSMUST00000114103,ENSMUST00000114107,ENSMUST00000114108,ENSMUST00000146403,NM_001177600,NM_011780,uc007bgd.1,uc007bge.1,uc007bgf.2,uc007bgg.1_5end | |association_with_transcript=0bp_to_ENSMUST00000087374,ENSMUST00000114101,ENSMUST00000114103,ENSMUST00000114107,ENSMUST00000114108,ENSMUST00000146403,NM_001177600,NM_011780,uc007bgd.1,uc007bge.1,uc007bgf.2,uc007bgg.1_5end | ||
|cluster_id=chr1:63492416..63492517,+ | |||
|description=CAGE_peak_1_at_Adam23_5end | |description=CAGE_peak_1_at_Adam23_5end | ||
|id=chr1:63492416..63492517,+ | |id=chr1:63492416..63492517,+ | ||
|ontology_enrichment_celltype=CL:0000393!2.10e-11!39;CL:0000211!2.10e-11!39;CL:0000055!5.40e-11!50;CL:0000540!2.93e-10!33;CL:0000047!2.93e-10!33;CL:0000031!2.93e-10!33;CL:0000404!2.93e-10!33;CL:0000117!3.95e-10!23;CL:0000337!3.95e-10!23;CL:0000221!1.31e-09!44;CL:0000133!1.31e-09!44;CL:0002319!3.05e-09!43 | |ontology_enrichment_celltype=CL:0000393!2.10e-11!39;CL:0000211!2.10e-11!39;CL:0000055!5.40e-11!50;CL:0000540!2.93e-10!33;CL:0000047!2.93e-10!33;CL:0000031!2.93e-10!33;CL:0000404!2.93e-10!33;CL:0000117!3.95e-10!23;CL:0000337!3.95e-10!23;CL:0000221!1.31e-09!44;CL:0000133!1.31e-09!44;CL:0002319!3.05e-09!43 | ||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.69e-11,39;CL:0000211,1.69e-11,39;CL:0000540,2.41e-10,33;CL:0000047,2.41e-10,33;CL:0000031,2.41e-10,33;CL:0000404,2.41e-10,33;CL:0000117,3.26e-10,23;CL:0000337,3.26e-10,23;CL:0000221,1.10e-09,44;CL:0000133,1.10e-09,44;CL:0002319,2.58e-09,43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.03e-22!73;UBERON:0005743!3.03e-22!73;UBERON:0000073!4.70e-22!75;UBERON:0001016!4.70e-22!75;UBERON:0004121!7.71e-22!102;UBERON:0000924!7.71e-22!102;UBERON:0006601!7.71e-22!102;UBERON:0002346!3.58e-18!71;UBERON:0003075!3.58e-18!71;UBERON:0007284!3.58e-18!71;UBERON:0001049!4.13e-18!52;UBERON:0005068!4.13e-18!52;UBERON:0006241!4.13e-18!52;UBERON:0007135!4.13e-18!52;UBERON:0000033!3.47e-17!63;UBERON:0000955!3.56e-17!50;UBERON:0006238!3.56e-17!50;UBERON:0002616!1.10e-16!49;UBERON:0002020!1.20e-14!34;UBERON:0003056!1.44e-13!49;UBERON:0003080!9.81e-13!40;UBERON:0002780!4.08e-12!39;UBERON:0001890!4.08e-12!39;UBERON:0006240!4.08e-12!39;UBERON:0002791!4.44e-12!29;UBERON:0003528!4.44e-12!29;UBERON:0001893!4.44e-12!29;UBERON:0000025!2.19e-11!114;UBERON:0004111!1.18e-10!122;UBERON:0007811!1.49e-10!86;UBERON:0000153!5.09e-10!94;UBERON:0000956!3.74e-08!21;UBERON:0001869!3.74e-08!21;UBERON:0000203!3.74e-08!21;UBERON:0000468!9.63e-08!333;UBERON:0002619!1.21e-07!17 | |ontology_enrichment_uberon=UBERON:0001017!3.03e-22!73;UBERON:0005743!3.03e-22!73;UBERON:0000073!4.70e-22!75;UBERON:0001016!4.70e-22!75;UBERON:0004121!7.71e-22!102;UBERON:0000924!7.71e-22!102;UBERON:0006601!7.71e-22!102;UBERON:0002346!3.58e-18!71;UBERON:0003075!3.58e-18!71;UBERON:0007284!3.58e-18!71;UBERON:0001049!4.13e-18!52;UBERON:0005068!4.13e-18!52;UBERON:0006241!4.13e-18!52;UBERON:0007135!4.13e-18!52;UBERON:0000033!3.47e-17!63;UBERON:0000955!3.56e-17!50;UBERON:0006238!3.56e-17!50;UBERON:0002616!1.10e-16!49;UBERON:0002020!1.20e-14!34;UBERON:0003056!1.44e-13!49;UBERON:0003080!9.81e-13!40;UBERON:0002780!4.08e-12!39;UBERON:0001890!4.08e-12!39;UBERON:0006240!4.08e-12!39;UBERON:0002791!4.44e-12!29;UBERON:0003528!4.44e-12!29;UBERON:0001893!4.44e-12!29;UBERON:0000025!2.19e-11!114;UBERON:0004111!1.18e-10!122;UBERON:0007811!1.49e-10!86;UBERON:0000153!5.09e-10!94;UBERON:0000956!3.74e-08!21;UBERON:0001869!3.74e-08!21;UBERON:0000203!3.74e-08!21;UBERON:0000468!9.63e-08!333;UBERON:0002619!1.21e-07!17 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.91e-22,73;UBERON:0004121,1.91e-22,95;UBERON:0000924,1.91e-22,95;UBERON:0006601,1.91e-22,95;UBERON:0001016,2.98e-22,75;UBERON:0000073,1.48e-19,54;UBERON:0002346,3.81e-19,64;UBERON:0003075,3.81e-19,64;UBERON:0007284,3.81e-19,64;UBERON:0010371,2.67e-18,73;UBERON:0001049,2.86e-18,52;UBERON:0005068,2.86e-18,52;UBERON:0006241,2.86e-18,52;UBERON:0007135,2.86e-18,52;UBERON:0000955,2.12e-15,47;UBERON:0006238,2.12e-15,47;UBERON:0002616,6.41e-15,46;UBERON:0002020,8.97e-15,34;UBERON:0003056,1.10e-13,49;UBERON:0003080,7.65e-13,40;UBERON:0010314,2.42e-12,92;UBERON:0002780,3.23e-12,39;UBERON:0001890,3.23e-12,39;UBERON:0006240,3.23e-12,39;UBERON:0003528,3.52e-12,29;UBERON:0002791,3.52e-12,29;UBERON:0001893,3.52e-12,29;UBERON:0000025,6.82e-11,114;UBERON:0004111,3.92e-10,122;UBERON:0000956,3.23e-08,21;UBERON:0001869,3.23e-08,21;UBERON:0000203,3.23e-08,21;UBERON:0002619,1.06e-07,17 | |||
|phase1_expression=5.2849119544582,0,0,0.30246421130683,0,0.33575854382378,0,0.129123323441576,0.281577444303333,0.234064526321993,0,0.0797721589953364,0.513602189793617,0.174840804837995,3.99731714178795,3.44207954562704,2.09868563438444,3.78554598429885,3.70208970735495,3.81950686618227,18.8796104135375,0.496454756004426,0,0.639969691173627,0.45881856213434,0,0.430761996159075,0,0.380046838912748,0.504060259519861,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,44.9451640172811,46.5320114297572,48.8234360750073,1.56478268869608,9.59310688073965,7.68901639570651,4.27745777963423,4.75953833526233,4.31257693094915,0,0,0,2.57259436035947,5.15760191889762,13.9231464914909,23.0640765379941,22.2176211294254,18.3811107016792,3.04960078862219,0.889294796111139,5.84934816232909,6.92206453796882,2.1314403448383,10.1864037576258,4.61061966385865,9.43575472007147,6.34527910158946,8.83364837675805,60.8436596780102,50.7997644188711,10.779190330916,10.6388472830242,12.8690630125403,85.8903871795232,105.725115934535,95.2360506188709,23.3438729282443,19.4868680873133,17.1901412283731,116.419310583576,52.3369227329462,61.119299110724,58.6310885092599,43.9928493669228,27.9599168737951,3.40767869999328,8.69072941228034,71.5965287093144,92.0653548370083,0,3.2382191498269,7.79731700937203,7.16843019355737,7.5839986871146,18.2360445158522,17.1458763037893,18.726997449048,20.281452447842,98.8113876090247,198.748086971184,255.984013135199,0,0,0.505524445014783,8.10705546005326,21.7507822263624,14.6957717674177,2.77576522825817,3.04465478312141,4.61230994512117,4.97384713823654,6.93773372100658,4.64966387919799,27.1914464507811,1.59059292611903,0,6.14714029800155,1.54589062922275,0.969750506270444,1.86391761218122,89.883704682545,118.546836056416,1.53274233125155,0,0,0,109.796538683735,96.0751265919116,45.9894928733084,64.8364714317191,68.7874580218589,73.5569677740843,79.9849426924045,10.9986512958342,3.6078021476927,1.51633655060205,3.57751155007006,6.37590170517248,5.51765050640335,5.04173963454978,9.64510834148576,17.9616357759506,14.8611915530426,12.1812241927647,13.9699820199068,2.15567992932842,5.8622884852024,7.03804496655795,3.06874025398605,2.50242524303038,2.78601733217733,2.67516777330327,2.38841120182192,0,0,0,1.86413195281952,2.57978665979206,1.2604344302271,2.3674473558521,1.96764231747404,0.925602677324269,2.09280550275367,2.95100741539581,4.32031766758527,1.6455984991348,0.985004784474571,2.99954595319666,2.63159977365598,1.09775057645525,1.61047702512446,52.1519072439036,34.7817589841981,0.330418782983798,0.528901133327089,3.83918850963421,3.71578674976702,4.51036114627327,2.01683524623343,1.33426826306922,1.71203063501303,0.949058123089023,3.12928013975621,3.2673577144035,1.79060824837036,2.33956904542944,0,1.94524244887225,2.38969527905241,1.51734320762465,1.71372768914593,0,0.610953983535943,0.775809948670503,3.22624771495465,0.69560190836683,0.295220295959204,0.31399745568275,0.370191491765402,16.3048944897932,0.166845105716094,0.786235980452812,0.674586337154561,1.82574109249653,4.10001171579109,3.8193877767213,8.0554918486227,21.4018499343047,8.78596522201861,27.3159592401974,21.5841749647732,13.4176199439261,14.1444171650383,16.6839594575378,24.6046195895317,1.84753190166605,3.97931964718018,0.977789858652155,0.848725428875941,0.234690248288502,1.17254380209271,3.57065461329021,8.00047956216975,7.40885177299098,8.63712289630222,9.40783135079174,5.07976275618788,6.56202931090403,6.79850575333104,0,0.54390568381871,1.47529281905711,3.86311444826625,139.679013289379,141.474505716789,78.3609038900508,2.01976741763498,5.04813151066011,5.0757036758563,10.9865932843727,8.36390792833932,11.8083297263669,15.5692091933858,7.69140333182299,8.76767573733936,6.7198922250909,36.3093087556642,5.10984306749767,1.42452482933804,3.90928702448583,1.15479086080775,1.32745138339963,0.971122544619926,0,0.754420319023592,1.18120757152309,1.22974059177571,2.84271122485043,2.18120237686503,1.06949213515416,2.21225730555071,0,2.06271086496374,11.9153862013826,7.0223826672211,3.88076051348264,3.00071849044229,1.59606210278046,7.84822797449111,8.88564711251453,8.22055362609418,1.87737366450968,15.6755732439227,1.10264199027481,9.0687439117814,9.68786560175433,6.33285711745637,2.86493625607528,3.11867709515616,1.7488850197791,174.48520919189,6.66396435111626,0.206386867963223,0.555583582109135,1.31857919903284,5.05768642567793,9.37990510146743,0,0.139951452323658,0,0.954670618015114,5.06137589729817,3.25311147402958,1.94409613479242,3.76358932826044,5.02233896616208,3.9110660451598,6.61227645802687,2.35580347785627,2.59229946583586,1.86401793926078,2.81846469342095,4.48549638131936,7.1147150896552,12.444876054019,10.7202653486517,12.3337971608268,15.256441023948,8.33308063001281,6.08184197669123,3.8653459332161,5.47257011889944,1.58005560314089,6.89265731986558,7.29247795870273,3.50786222040047,2.68540043501222,1.98681354781265,1.20195449519969,1.9199638532695,1.9183625490148,1.752756553065,1.51239277705261,2.53390489923356,1.73181314952593,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| ||
|short_description=p1@Adam23 | |short_description=p1@Adam23 | ||
}} | }} |
Latest revision as of 07:42, 27 September 2015
Short description: | p1@Adam23 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Adam23_5end |
Coexpression cluster: | MCL_coexpression_mm9:873 |
Association with transcript: | 0bp_to_ENSMUST00000087374, ENSMUST00000114101, ENSMUST00000114103, ENSMUST00000114107, ENSMUST00000114108, ENSMUST00000146403, NM_001177600, NM_011780, uc007bgd.1, uc007bge.1, uc007bgf.2, uc007bgg.1_5end |
EntrezGene: | Adam23 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.69e-11 | 39 |
electrically active cell | 1.69e-11 | 39 |
neuron | 2.41e-10 | 33 |
neuronal stem cell | 2.41e-10 | 33 |
neuroblast | 2.41e-10 | 33 |
electrically signaling cell | 2.41e-10 | 33 |
CNS neuron (sensu Vertebrata) | 3.26e-10 | 23 |
neuroblast (sensu Vertebrata) | 3.26e-10 | 23 |
ectodermal cell | 1.10e-09 | 44 |
neurectodermal cell | 1.10e-09 | 44 |
neural cell | 2.58e-09 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.91e-22 | 73 |
ectoderm-derived structure | 1.91e-22 | 95 |
ectoderm | 1.91e-22 | 95 |
presumptive ectoderm | 1.91e-22 | 95 |
nervous system | 2.98e-22 | 75 |
regional part of nervous system | 1.48e-19 | 54 |
neurectoderm | 3.81e-19 | 64 |
neural plate | 3.81e-19 | 64 |
presumptive neural plate | 3.81e-19 | 64 |
ecto-epithelium | 2.67e-18 | 73 |
neural tube | 2.86e-18 | 52 |
neural rod | 2.86e-18 | 52 |
future spinal cord | 2.86e-18 | 52 |
neural keel | 2.86e-18 | 52 |
brain | 2.12e-15 | 47 |
future brain | 2.12e-15 | 47 |
regional part of brain | 6.41e-15 | 46 |
gray matter | 8.97e-15 | 34 |
pre-chordal neural plate | 1.10e-13 | 49 |
anterior neural tube | 7.65e-13 | 40 |
structure with developmental contribution from neural crest | 2.42e-12 | 92 |
regional part of forebrain | 3.23e-12 | 39 |
forebrain | 3.23e-12 | 39 |
future forebrain | 3.23e-12 | 39 |
brain grey matter | 3.52e-12 | 29 |
regional part of telencephalon | 3.52e-12 | 29 |
telencephalon | 3.52e-12 | 29 |
tube | 6.82e-11 | 114 |
anatomical conduit | 3.92e-10 | 122 |
cerebral cortex | 3.23e-08 | 21 |
cerebral hemisphere | 3.23e-08 | 21 |
pallium | 3.23e-08 | 21 |
regional part of cerebral cortex | 1.06e-07 | 17 |