FFCP PHASE1:Hg19::chr2:219248811..219248852,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:219248811..219248852,+
|short_description=p8@SLC11A1
|description=CAGE_peak_8_at_SLC11A1_5end
|association_with_transcript=-37bp_to_ENST00000483487_5end
|...") |
No edit summary |
||
(13 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6556 | |EntrezGene=6556 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10907 | |HGNC=10907 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-37bp_to_ENST00000483487_5end | |||
|cluster_id=chr2:219248811..219248852,+ | |||
|coexpression_cluster_id=C65 | |||
|description=CAGE_peak_8_at_SLC11A1_5end | |||
|id=chr2:219248811..219248852,+ | |||
|ontology_enrichment_celltype=CL:0002194!1.60e-54!63;CL:0000576!1.60e-54!63;CL:0000040!1.60e-54!63;CL:0000559!1.60e-54!63;CL:0002009!2.53e-52!65;CL:0000839!2.24e-47!70;CL:0000557!1.81e-46!71;CL:0002057!1.14e-45!42;CL:0000766!3.43e-44!76;CL:0000860!7.30e-44!45;CL:0002087!1.51e-27!119;CL:0000763!1.39e-24!112;CL:0000049!1.39e-24!112;CL:0002031!1.59e-23!124;CL:0000738!8.35e-22!140;CL:0000037!1.29e-14!172;CL:0000566!1.29e-14!172;CL:0002032!2.04e-14!165;CL:0000837!2.04e-14!165;CL:0000988!6.21e-13!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.72e-121;33!CL:0002057;3.72e-121;33!CL:0000473;1.40e-111;39!CL:0000234;1.40e-111;39!CL:0000576;1.36e-61;48!CL:0000766;2.99e-38;69!CL:0000763;3.73e-19;100!CL:0002087;7.50e-15;104!CL:0000235;4.48e-14;6!CL:0000738;1.16e-12;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.25e-116,48;CL:0000234,1.25e-116,48;CL:0002194,2.39e-103,59;CL:0000576,2.39e-103,59;CL:0000040,2.39e-103,59;CL:0000559,2.39e-103,59;CL:0000860,2.73e-103,42;CL:0002057,2.73e-103,42;CL:0002009,8.52e-100,61;CL:0000839,7.64e-92,66;CL:0000557,2.16e-90,67;CL:0000766,9.78e-84,72;CL:0000763,8.16e-54,108;CL:0000049,8.16e-54,108;CL:0002087,3.77e-50,115;CL:0002031,8.61e-48,120;CL:0000738,2.13e-41,136;CL:0002032,6.26e-34,161;CL:0000837,6.26e-34,161;CL:0000037,3.11e-32,168;CL:0000988,3.01e-30,177;CL:0000235,4.80e-14,6;CL:0000134,1.37e-11,354;CL:0002320,3.17e-11,361;CL:0000219,6.13e-10,386;CL:0000048,2.31e-08,427;CL:0000723,3.81e-08,433;CL:0000034,7.27e-08,441 | |||
|ontology_enrichment_development_v019=CL:0002057;5.85e-77;42!CL:0000049;1.03e-18;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.41e-39!80;UBERON:0001474!1.97e-35!86;UBERON:0002390!1.69e-32!102;UBERON:0003061!1.69e-32!102;UBERON:0004765!3.34e-32!101;UBERON:0001434!3.34e-32!101;UBERON:0002193!4.88e-28!112;UBERON:0002405!1.56e-24!115;UBERON:0002204!9.94e-14!167;UBERON:0000062!6.75e-13!511;UBERON:0003081!1.48e-08!216;UBERON:0000467!3.82e-08!625;UBERON:0000480!4.41e-08!626;UBERON:0000923!1.35e-07!604;UBERON:0005291!1.35e-07!604;UBERON:0006598!1.35e-07!604;UBERON:0002532!1.35e-07!604;UBERON:0002050!1.55e-07!605;UBERON:0005423!1.55e-07!605;UBERON:0000922!4.05e-07!612;UBERON:0000468!4.65e-07!659 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.95e-79,76;UBERON:0001474,7.96e-73,82;UBERON:0004765,8.04e-66,90;UBERON:0002405,1.68e-63,93;UBERON:0002390,6.02e-60,98;UBERON:0003061,6.02e-60,98;UBERON:0001434,1.27e-58,100;UBERON:0002193,8.16e-54,108;UBERON:0002204,1.82e-32,167;UBERON:0003081,1.71e-25,203;UBERON:0000926,6.44e-14,315;UBERON:0004120,6.44e-14,315;UBERON:0006603,6.44e-14,315;UBERON:0002384,9.98e-11,371;UBERON:0000923,4.89e-07,560;UBERON:0010316,4.89e-07,560;UBERON:0005291,4.89e-07,560;UBERON:0006598,4.89e-07,560;UBERON:0010317,4.89e-07,560;UBERON:0002532,4.89e-07,560;UBERON:0002050,6.22e-07,564 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0.0774672005803016,0.142169232487422,0,0,0.401088894940283,0,1.11957737119962,0.647787332037959,0.515151135268373,3.63495596948912,5.29026321164333,1.4555043671269,7.67015821788759,15.2132118568076,14.865905802965,10.9323109082417,8.96562472851852,5.91205574721463,8.27389633767885,7.10033151942209,12.1883837934908,9.78860165621544,12.8265890527188,6.29225756446237,11.6311879100943,9.30694178520671,4.47535988059329,2.30895910130701,6.58230070151385,2.98357325372886,8.9964863974861,6.24123747160254,9.9651559839292,12.3111845975804,10.429658368404,11.5110087693712,5.44859552370032,8.10210799172642,2.21523671208619,0,0,0.419317291016752,0.336985893439485,0.600707571366025,0.32145117339416,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0.370784442784429,0.649094787309367,0.696518949197069,2.52620124985844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0.545492241181669,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0.301586917234893,0.370353780634118,0,0,0,0,0,0,0,0,0,0,6.15542515218493,14.5082644386327,13.9713292551405,0.93733833986777,0.671928512795438,0.708875486211932,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.51128545716063,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0.0920809889358963,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0.382838137483752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.564862804660675,0.43050537267123,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0.447352215784832,0.166849141711909,0,0,0,0,0,0,0,0.879049075631364,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,1.52581736317083,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0,0,0.19566461893209,0,0,0,0,0.252746318513952,0.60129367765797,0.207376382794494,0,0,0,0,0,0.277349346026277,0,0,0,0,0,0,0,0.0821154570532092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0.600420288709789,0.136905378891993,0,0,0,0,0,0,0.199679000498991,0.429226048136571,0,0,0,0,0,0,0,0,0,0.795229689809303,0,0,0,0,0,0,0,0.335434687599266,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,0.854299300541557,0,1.65695622138878,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0.573409195690071,0.110929051536852,0.124192805882767,0,0.124980407962107,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,0.196295437002051,0.11796972334774,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0.127762427639595,1.07140367175657,0,0,0,0.0887023701626388,0,0,0.0679697329768317,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0.245148321753905,0,0.196308467114945,0,0,0,0,0.128915775947154,0,0,0.705789743431384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0.829169439458779,0.103432995861895,0.213233981900981,0,0,0.186224142887574,0,0,0,0.217716747896961,1.02669990325584,0,0.286888821570705,0.665320713092027,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0.0774672005803016,0.142169232487422,0,0,0.401088894940283,0,1.11957737119962,0.647787332037959,0.515151135268373,3.63495596948912,5.29026321164333,1.4555043671269,7.67015821788759,15.2132118568076,14.865905802965,10.9323109082417,8.96562472851852,5.91205574721463,8.27389633767885,7.10033151942209,12.1883837934908,9.78860165621544,12.8265890527188,6.29225756446237,11.6311879100943,9.30694178520671,4.47535988059329,2.30895910130701,6.58230070151385,2.98357325372886,8.9964863974861,6.24123747160254,9.9651559839292,12.3111845975804,10.429658368404,11.5110087693712,5.44859552370032,8.10210799172642,2.21523671208619,0,0,0.419317291016752,0.336985893439485,0.600707571366025,0.32145117339416,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0.370784442784429,0.649094787309367,0.696518949197069,2.52620124985844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0.545492241181669,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0.301586917234893,0.370353780634118,0,0,0,0,0,0,0,0,0,0,6.15542515218493,14.5082644386327,13.9713292551405,0.93733833986777,0.671928512795438,0.708875486211932,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.51128545716063,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0.0920809889358963,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0.382838137483752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.564862804660675,0.43050537267123,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0.447352215784832,0.166849141711909,0,0,0,0,0,0,0,0.879049075631364,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,1.52581736317083,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0,0,0.19566461893209,0,0,0,0,0.252746318513952,0.60129367765797,0.207376382794494,0,0,0,0,0,0.277349346026277,0,0,0,0,0,0,0,0.0821154570532092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0.600420288709789,0.136905378891993,0,0,0,0,0,0,0.199679000498991,0.429226048136571,0,0,0,0,0,0,0,0,0,0.795229689809303,0,0,0,0,0,0,0,0.335434687599266,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,0.854299300541557,0,1.65695622138878,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0.573409195690071,0.110929051536852,0.124192805882767,0,0.124980407962107,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,0.196295437002051,0.11796972334774,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0.127762427639595,1.07140367175657,0,0,0,0.0887023701626388,0,0,0.0679697329768317,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0.245148321753905,0,0.196308467114945,0,0,0,0,0.128915775947154,0,0,0.705789743431384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0.829169439458779,0.103432995861895,0.213233981900981,0,0,0.186224142887574,0,0,0,0.217716747896961,1.02669990325584,0,0.286888821570705,0.665320713092027,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p8@SLC11A1 | |||
}} | }} |
Latest revision as of 17:20, 24 September 2015
Short description: | p8@SLC11A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_SLC11A1_5end |
Coexpression cluster: | C65_CD14_Eosinophils_Monocytederived_Basophils_immature_Macrophage_Neutrophils |
Association with transcript: | -37bp_to_ENST00000483487_5end |
EntrezGene: | SLC11A1 |
HGNC: | 10907 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.25e-116 | 48 |
phagocyte | 1.25e-116 | 48 |
monopoietic cell | 2.39e-103 | 59 |
monocyte | 2.39e-103 | 59 |
monoblast | 2.39e-103 | 59 |
promonocyte | 2.39e-103 | 59 |
classical monocyte | 2.73e-103 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.73e-103 | 42 |
macrophage dendritic cell progenitor | 8.52e-100 | 61 |
myeloid lineage restricted progenitor cell | 7.64e-92 | 66 |
granulocyte monocyte progenitor cell | 2.16e-90 | 67 |
myeloid leukocyte | 9.78e-84 | 72 |
myeloid cell | 8.16e-54 | 108 |
common myeloid progenitor | 8.16e-54 | 108 |
nongranular leukocyte | 3.77e-50 | 115 |
hematopoietic lineage restricted progenitor cell | 8.61e-48 | 120 |
leukocyte | 2.13e-41 | 136 |
hematopoietic oligopotent progenitor cell | 6.26e-34 | 161 |
hematopoietic multipotent progenitor cell | 6.26e-34 | 161 |
hematopoietic stem cell | 3.11e-32 | 168 |
hematopoietic cell | 3.01e-30 | 177 |
macrophage | 4.80e-14 | 6 |
mesenchymal cell | 1.37e-11 | 354 |
connective tissue cell | 3.17e-11 | 361 |
motile cell | 6.13e-10 | 386 |
multi fate stem cell | 2.31e-08 | 427 |
somatic stem cell | 3.81e-08 | 433 |
stem cell | 7.27e-08 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.95e-79 | 76 |
bone element | 7.96e-73 | 82 |
skeletal element | 8.04e-66 | 90 |
immune system | 1.68e-63 | 93 |
hematopoietic system | 6.02e-60 | 98 |
blood island | 6.02e-60 | 98 |
skeletal system | 1.27e-58 | 100 |
hemolymphoid system | 8.16e-54 | 108 |
musculoskeletal system | 1.82e-32 | 167 |
lateral plate mesoderm | 1.71e-25 | 203 |
mesoderm | 6.44e-14 | 315 |
mesoderm-derived structure | 6.44e-14 | 315 |
presumptive mesoderm | 6.44e-14 | 315 |
connective tissue | 9.98e-11 | 371 |
germ layer | 4.89e-07 | 560 |
germ layer / neural crest | 4.89e-07 | 560 |
embryonic tissue | 4.89e-07 | 560 |
presumptive structure | 4.89e-07 | 560 |
germ layer / neural crest derived structure | 4.89e-07 | 560 |
epiblast (generic) | 4.89e-07 | 560 |
embryonic structure | 6.22e-07 | 564 |