FFCP PHASE1:Mm9::chr3:103664188..103664216,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=19260 | |EntrezGene=19260 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=7 | |MCL_coexpression_id=7 | ||
|TSSclassifier=NA | |||
|UniProt=P29352 | |UniProt=P29352 | ||
|association_with_transcript=0bp_to_ENSMUST00000029433,NM_008979,uc008qtv.1_5end | |association_with_transcript=0bp_to_ENSMUST00000029433,NM_008979,uc008qtv.1_5end | ||
|cluster_id=chr3:103664188..103664216,+ | |||
|description=CAGE_peak_1_at_Ptpn22_5end | |description=CAGE_peak_1_at_Ptpn22_5end | ||
|id=chr3:103664188..103664216,+ | |id=chr3:103664188..103664216,+ | ||
|ontology_enrichment_celltype=CL:0000988!2.80e-09!32;CL:0002032!2.80e-09!32;CL:0000037!2.80e-09!32;CL:0000566!2.80e-09!32;CL:0000837!2.80e-09!32;CL:0000838!1.01e-08!12;CL:0000084!3.43e-08!11;CL:0000827!3.43e-08!11;CL:0000542!9.54e-08!13;CL:0000051!9.54e-08!13;CL:0000791!1.42e-07!9;CL:0000789!1.42e-07!9;CL:0002420!1.42e-07!9;CL:0002419!1.42e-07!9;CL:0000790!1.42e-07!9;CL:0002031!1.50e-07!25;CL:0000624!6.82e-07!8;CL:0000738!9.12e-07!17;CL:0002087!9.12e-07!17 | |ontology_enrichment_celltype=CL:0000988!2.80e-09!32;CL:0002032!2.80e-09!32;CL:0000037!2.80e-09!32;CL:0000566!2.80e-09!32;CL:0000837!2.80e-09!32;CL:0000838!1.01e-08!12;CL:0000084!3.43e-08!11;CL:0000827!3.43e-08!11;CL:0000542!9.54e-08!13;CL:0000051!9.54e-08!13;CL:0000791!1.42e-07!9;CL:0000789!1.42e-07!9;CL:0002420!1.42e-07!9;CL:0002419!1.42e-07!9;CL:0000790!1.42e-07!9;CL:0002031!1.50e-07!25;CL:0000624!6.82e-07!8;CL:0000738!9.12e-07!17;CL:0002087!9.12e-07!17 | ||
|ontology_enrichment_celltype_v019_2=CL:0000988,3.36e-14,32;CL:0002032,3.36e-14,32;CL:0000037,3.36e-14,32;CL:0000837,3.36e-14,32;CL:0002031,9.44e-12,25;CL:0000838,1.75e-11,12;CL:0000084,9.49e-11,11;CL:0000827,9.49e-11,11;CL:0000542,3.26e-10,13;CL:0000051,3.26e-10,13;CL:0000791,6.77e-10,9;CL:0000789,6.77e-10,9;CL:0002420,6.77e-10,9;CL:0002419,6.77e-10,9;CL:0000790,6.77e-10,9;CL:0000738,3.31e-09,17;CL:0002087,3.31e-09,17;CL:0000624,5.90e-09,8;CL:0002320,1.72e-07,46;CL:0000134,1.72e-07,46;CL:0000893,3.96e-07,6;CL:0002489,3.96e-07,6;CL:0000898,3.96e-07,6;CL:0000809,3.96e-07,6;CL:0000810,3.96e-07,6;CL:0000895,3.96e-07,6;CL:0000808,3.96e-07,6;CL:0000894,3.96e-07,6;CL:0000806,3.96e-07,6;CL:0000807,3.96e-07,6;CL:0000805,3.96e-07,6;CL:0002425,3.96e-07,6;CL:0002436,3.96e-07,6;CL:0002427,3.96e-07,6;CL:0002428,3.96e-07,6;CL:0002429,3.96e-07,6;CL:0002433,3.96e-07,6;CL:0002431,3.96e-07,6;CL:0002432,3.96e-07,6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.31e-17!48;UBERON:0002390!3.35e-16!45;UBERON:0003061!3.35e-16!45;UBERON:0002405!2.78e-14!70;UBERON:0004177!1.13e-12!29;UBERON:0000072!1.68e-11!27;UBERON:0003408!1.09e-10!24;UBERON:0000926!1.85e-10!193;UBERON:0004120!1.85e-10!193;UBERON:0006603!1.85e-10!193;UBERON:0003081!2.25e-10!88;UBERON:0002370!2.28e-10!23;UBERON:0000974!2.28e-10!23;UBERON:0004807!2.28e-10!23;UBERON:0005058!2.28e-10!23;UBERON:0003351!2.28e-10!23;UBERON:0009113!2.28e-10!23;UBERON:0003295!2.28e-10!23;UBERON:0009722!2.28e-10!23;UBERON:0005562!2.28e-10!23;UBERON:0007690!2.28e-10!23;UBERON:0001004!3.43e-10!42;UBERON:0006562!5.86e-10!24;UBERON:0001557!5.86e-10!24;UBERON:0001042!5.86e-10!24;UBERON:0008814!5.86e-10!24;UBERON:0009145!5.86e-10!24;UBERON:0000065!7.30e-10!41;UBERON:0003104!1.65e-09!131;UBERON:0009142!1.65e-09!131;UBERON:0005057!3.92e-09!51;UBERON:0000063!4.05e-08!35;UBERON:0000077!9.34e-08!97;UBERON:0001041!1.27e-07!92 | |ontology_enrichment_uberon=UBERON:0002193!1.31e-17!48;UBERON:0002390!3.35e-16!45;UBERON:0003061!3.35e-16!45;UBERON:0002405!2.78e-14!70;UBERON:0004177!1.13e-12!29;UBERON:0000072!1.68e-11!27;UBERON:0003408!1.09e-10!24;UBERON:0000926!1.85e-10!193;UBERON:0004120!1.85e-10!193;UBERON:0006603!1.85e-10!193;UBERON:0003081!2.25e-10!88;UBERON:0002370!2.28e-10!23;UBERON:0000974!2.28e-10!23;UBERON:0004807!2.28e-10!23;UBERON:0005058!2.28e-10!23;UBERON:0003351!2.28e-10!23;UBERON:0009113!2.28e-10!23;UBERON:0003295!2.28e-10!23;UBERON:0009722!2.28e-10!23;UBERON:0005562!2.28e-10!23;UBERON:0007690!2.28e-10!23;UBERON:0001004!3.43e-10!42;UBERON:0006562!5.86e-10!24;UBERON:0001557!5.86e-10!24;UBERON:0001042!5.86e-10!24;UBERON:0008814!5.86e-10!24;UBERON:0009145!5.86e-10!24;UBERON:0000065!7.30e-10!41;UBERON:0003104!1.65e-09!131;UBERON:0009142!1.65e-09!131;UBERON:0005057!3.92e-09!51;UBERON:0000063!4.05e-08!35;UBERON:0000077!9.34e-08!97;UBERON:0001041!1.27e-07!92 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,3.98e-24,48;UBERON:0002405,3.98e-24,48;UBERON:0002390,3.63e-22,45;UBERON:0003061,3.63e-22,45;UBERON:0004177,3.18e-18,29;UBERON:0005057,3.18e-18,29;UBERON:0000077,2.10e-16,35;UBERON:0000072,3.50e-16,27;UBERON:0003408,1.82e-15,24;UBERON:0002370,5.02e-15,23;UBERON:0000974,5.02e-15,23;UBERON:0004807,5.02e-15,23;UBERON:0005058,5.02e-15,23;UBERON:0003351,5.02e-15,23;UBERON:0009113,5.02e-15,23;UBERON:0003295,5.02e-15,23;UBERON:0009722,5.02e-15,23;UBERON:0005562,5.02e-15,23;UBERON:0007690,5.02e-15,23;UBERON:0006562,5.02e-14,24;UBERON:0001557,5.02e-14,24;UBERON:0001042,5.02e-14,24;UBERON:0008814,5.02e-14,24;UBERON:0009145,5.02e-14,24;UBERON:0001004,7.71e-14,42;UBERON:0000065,2.20e-13,41;UBERON:0003081,3.97e-12,87;UBERON:0000926,5.48e-11,120;UBERON:0004120,5.48e-11,120;UBERON:0006603,5.48e-11,120;UBERON:0001041,1.66e-09,80;UBERON:0002384,1.72e-07,46;UBERON:0007811,1.91e-07,36 | |||
|phase1_expression=0.80074423552397,0,0,0,0.500895729946347,0,0,69.468348011568,720.415891250079,561.988927699106,173.443801812437,118.621200426065,59.7490547459908,41.6995319538618,9.99329285446988,18.8301998672538,11.1929900500503,42.429661240683,47.4415940275856,58.5657719481282,2.72138528483423,8.24114894967348,6.26879493933445,5.59973479776923,4.12936705920906,0,0,0,1.71021077510736,0.252030129759931,0.886922042621219,0,0,0,0,0.166234645358492,0,20.9265815368454,21.0960543021426,26.6997109426637,31.7645003536748,32.1031377930469,22.8189865924642,2.14024590558481,0.912392380975631,1.28482726513177,0,0,0,0,0,0,23.6573474541408,76.1630249111912,96.1228265547447,0.514518872071894,0,0.515672092277442,0.202316460859598,0.528990979272033,0,0,0,0.449949858640699,0.988866362566974,1.4209602298922,0,0.384218305321555,0,0,0,0,0,0,0,0,1.10115880999389,0.127687338085188,0.153606533256243,0.131886287730194,0,0,0,0,0.45839474333043,0,0,0,0,0.226714680320357,0,0.860423876981386,0,0,0.649776417447669,0.448026887097336,2.94933282276679,0.170430322578058,0,0,0.563373679106722,1.28326477414318,0,0,22.0820861831438,21.2822286999083,20.2209778005913,5.59501010623394,77.1634893268572,2.22663208597237,0.520455980298408,0.304465478312141,0,0.150722640552623,0.587943535678524,0.753999547978053,0.247194967734374,4.33798070759735,15.9229899350977,2.26473589926373,3.3126227769059,3.87900202508178,1.86391761218122,0.585561594023094,0,3.57639877292028,8.50687383992034,5.39912457894067,10.8009693012105,0.599162557619291,0.457500602818626,0.125654352112864,0.521472960576829,0.511430914660661,0,0.162241263067758,0.712875546952214,16.9193480029727,36.8975227313165,0.420883711772948,0,0.229902104433473,0,0.452114453507145,0.204109497453984,0,0.0937017245597288,0.776110112217047,0,0,0.175951124163949,0.219195732427575,0.278047249225598,0.348252166522167,0.205782136407943,0,11.2354109970118,8.23513302767089,11.0823764764281,0,0.234526059981096,0.36012412292203,0.473489471170421,0.393528463494808,0.308534225774757,0.697601834251224,0,0.583826711835847,0,0.492502392237286,0.324275238183423,0.584799949701329,1.09775057645525,1.47627060636409,0.420579897128254,0,1.98251269790279,0.793351699990633,0.213288250535234,0.232236671860439,0.644337306610467,0.201683524623343,0.889512175379481,0.190225626112559,1.42358718463353,0.164698954724011,1.25667604400135,0.596869416123452,0,0,0.216138049874694,0.995706366271836,0.189667900953082,0.342745537829186,1.1270773567308,0,0.387904974335251,0.140271639780637,0.252946148497029,0.590440591918409,0.470996183524124,0.987177311374404,0.889357881261447,0.333690211432188,0.393117990226406,1.57403478669398,1.82574109249653,4.10001171579109,2.29163266603278,0.863088412352432,4.37765112292595,2.74561413188081,0,1.11642284300551,0.624075346229121,0.757736633841335,0.358794827043824,0.482443521363367,8.31389355749721,0,0,0.169745085775188,0.234690248288502,0.837531287209079,0.714130922658041,0.390267295715598,2.36452716159286,1.7717175171902,2.23236676120482,2.62181303545181,2.93564469172023,3.7608755231193,6.03165135757089,10.3342079925555,1.47529281905711,3.03530420935206,0.321101179975584,0.234423373184406,0,0.757412781613119,0.315508219416257,0.390438744296638,0.215423397732799,0,0.668396022247182,0.283076530788832,0,0,0,0.321321316421807,17.8844507362418,1.42452482933804,2.76907830901079,41.0775606201613,0,0.242780636154981,0,0,0.295301892880773,0,0.258428293168221,0.727067458955011,1.06949213515416,1.26414703174326,1.05418608574999,2.06271086496374,0,0.18006109403131,0,0.428674070063185,0.532020700926821,0.356737635204141,0.493647061806363,0,2.81606049676452,0,0.441056796109924,0.65954501176592,0.484393280087717,0.241251699712623,0.358117032009409,0.492422699235184,1.7488850197791,0.556275906031529,19.4792804109552,3.92135049130123,6.11141940320049,7.72310673719233,7.10809984149331,10.2950177942935,17.5077782893671,14.9748053986314,13.5435974328335,0,0.316335993581135,0.813277868507395,1.08005340821801,0.418176592028937,0.436725127492355,0.404593039154462,0.826534557253359,0.523511883968059,1.42576470620972,4.97071450469541,0,0.149516546043979,0.165458490457098,0.194451188344048,0.129159823477731,0.337912250981556,0.234714477291508,0.13020438484395,0.314578033277133,0.483168241652012,0.864090018773596,43.9255457673168,6.08175645870493,12.9415806027682,19.0983609777359,17.3655894797457,26.6233015406895,23.317917206874,24.811840565329,28.9773711351184,26.6723823292499,29.2395936896838,28.4577011760077,32.0385432662297,47.5688991878986,0.453460767230423,0,0,0,1.73870634628971,14.2638681342898,12.6374620744413,2.57242054894879,1.50471631210609,1.12950368523413,0.460325236507177,0,0,0,0,0.675022500231806,0,0.453142408984205,0.51776031175182,0,0,0.341467211508268,0.486213434136588,0.209613162627982,0.183843508450014,2.22246727801615,1.03017528619447,1.28367683836726,0.505394423527595,1.01391719956096,0.754505365544305,0.936415074698824,0.448176066834085,0.459483751644906,0.476293691283074,0.579421629724277,0.38581844092741,0.412085900803307,1.32479028120958,0.342869252385415,0.70990322463735,0.476872379894642,1.0174249164263,0.470546902076653,0.676916863133412,0.73171189149109,0.789209134313529,0.814824683075171,2.24456908663095,0.118635018124174,0.29551344712669,0.409231043169689,0.929621047115796,1.73615949883027,0.499621155875892,0.935726433781634,0.429742108096597,0.956441660344217,1.76473135295612,2.78241402744506 | |phase1_expression=0.80074423552397,0,0,0,0.500895729946347,0,0,69.468348011568,720.415891250079,561.988927699106,173.443801812437,118.621200426065,59.7490547459908,41.6995319538618,9.99329285446988,18.8301998672538,11.1929900500503,42.429661240683,47.4415940275856,58.5657719481282,2.72138528483423,8.24114894967348,6.26879493933445,5.59973479776923,4.12936705920906,0,0,0,1.71021077510736,0.252030129759931,0.886922042621219,0,0,0,0,0.166234645358492,0,20.9265815368454,21.0960543021426,26.6997109426637,31.7645003536748,32.1031377930469,22.8189865924642,2.14024590558481,0.912392380975631,1.28482726513177,0,0,0,0,0,0,23.6573474541408,76.1630249111912,96.1228265547447,0.514518872071894,0,0.515672092277442,0.202316460859598,0.528990979272033,0,0,0,0.449949858640699,0.988866362566974,1.4209602298922,0,0.384218305321555,0,0,0,0,0,0,0,0,1.10115880999389,0.127687338085188,0.153606533256243,0.131886287730194,0,0,0,0,0.45839474333043,0,0,0,0,0.226714680320357,0,0.860423876981386,0,0,0.649776417447669,0.448026887097336,2.94933282276679,0.170430322578058,0,0,0.563373679106722,1.28326477414318,0,0,22.0820861831438,21.2822286999083,20.2209778005913,5.59501010623394,77.1634893268572,2.22663208597237,0.520455980298408,0.304465478312141,0,0.150722640552623,0.587943535678524,0.753999547978053,0.247194967734374,4.33798070759735,15.9229899350977,2.26473589926373,3.3126227769059,3.87900202508178,1.86391761218122,0.585561594023094,0,3.57639877292028,8.50687383992034,5.39912457894067,10.8009693012105,0.599162557619291,0.457500602818626,0.125654352112864,0.521472960576829,0.511430914660661,0,0.162241263067758,0.712875546952214,16.9193480029727,36.8975227313165,0.420883711772948,0,0.229902104433473,0,0.452114453507145,0.204109497453984,0,0.0937017245597288,0.776110112217047,0,0,0.175951124163949,0.219195732427575,0.278047249225598,0.348252166522167,0.205782136407943,0,11.2354109970118,8.23513302767089,11.0823764764281,0,0.234526059981096,0.36012412292203,0.473489471170421,0.393528463494808,0.308534225774757,0.697601834251224,0,0.583826711835847,0,0.492502392237286,0.324275238183423,0.584799949701329,1.09775057645525,1.47627060636409,0.420579897128254,0,1.98251269790279,0.793351699990633,0.213288250535234,0.232236671860439,0.644337306610467,0.201683524623343,0.889512175379481,0.190225626112559,1.42358718463353,0.164698954724011,1.25667604400135,0.596869416123452,0,0,0.216138049874694,0.995706366271836,0.189667900953082,0.342745537829186,1.1270773567308,0,0.387904974335251,0.140271639780637,0.252946148497029,0.590440591918409,0.470996183524124,0.987177311374404,0.889357881261447,0.333690211432188,0.393117990226406,1.57403478669398,1.82574109249653,4.10001171579109,2.29163266603278,0.863088412352432,4.37765112292595,2.74561413188081,0,1.11642284300551,0.624075346229121,0.757736633841335,0.358794827043824,0.482443521363367,8.31389355749721,0,0,0.169745085775188,0.234690248288502,0.837531287209079,0.714130922658041,0.390267295715598,2.36452716159286,1.7717175171902,2.23236676120482,2.62181303545181,2.93564469172023,3.7608755231193,6.03165135757089,10.3342079925555,1.47529281905711,3.03530420935206,0.321101179975584,0.234423373184406,0,0.757412781613119,0.315508219416257,0.390438744296638,0.215423397732799,0,0.668396022247182,0.283076530788832,0,0,0,0.321321316421807,17.8844507362418,1.42452482933804,2.76907830901079,41.0775606201613,0,0.242780636154981,0,0,0.295301892880773,0,0.258428293168221,0.727067458955011,1.06949213515416,1.26414703174326,1.05418608574999,2.06271086496374,0,0.18006109403131,0,0.428674070063185,0.532020700926821,0.356737635204141,0.493647061806363,0,2.81606049676452,0,0.441056796109924,0.65954501176592,0.484393280087717,0.241251699712623,0.358117032009409,0.492422699235184,1.7488850197791,0.556275906031529,19.4792804109552,3.92135049130123,6.11141940320049,7.72310673719233,7.10809984149331,10.2950177942935,17.5077782893671,14.9748053986314,13.5435974328335,0,0.316335993581135,0.813277868507395,1.08005340821801,0.418176592028937,0.436725127492355,0.404593039154462,0.826534557253359,0.523511883968059,1.42576470620972,4.97071450469541,0,0.149516546043979,0.165458490457098,0.194451188344048,0.129159823477731,0.337912250981556,0.234714477291508,0.13020438484395,0.314578033277133,0.483168241652012,0.864090018773596,43.9255457673168,6.08175645870493,12.9415806027682,19.0983609777359,17.3655894797457,26.6233015406895,23.317917206874,24.811840565329,28.9773711351184,26.6723823292499,29.2395936896838,28.4577011760077,32.0385432662297,47.5688991878986,0.453460767230423,0,0,0,1.73870634628971,14.2638681342898,12.6374620744413,2.57242054894879,1.50471631210609,1.12950368523413,0.460325236507177,0,0,0,0,0.675022500231806,0,0.453142408984205,0.51776031175182,0,0,0.341467211508268,0.486213434136588,0.209613162627982,0.183843508450014,2.22246727801615,1.03017528619447,1.28367683836726,0.505394423527595,1.01391719956096,0.754505365544305,0.936415074698824,0.448176066834085,0.459483751644906,0.476293691283074,0.579421629724277,0.38581844092741,0.412085900803307,1.32479028120958,0.342869252385415,0.70990322463735,0.476872379894642,1.0174249164263,0.470546902076653,0.676916863133412,0.73171189149109,0.789209134313529,0.814824683075171,2.24456908663095,0.118635018124174,0.29551344712669,0.409231043169689,0.929621047115796,1.73615949883027,0.499621155875892,0.935726433781634,0.429742108096597,0.956441660344217,1.76473135295612,2.78241402744506 | ||
|short_description=p1@Ptpn22 | |short_description=p1@Ptpn22 | ||
}} | }} |
Latest revision as of 05:35, 27 September 2015
Short description: | p1@Ptpn22 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ptpn22_5end |
Coexpression cluster: | MCL_coexpression_mm9:7 |
Association with transcript: | 0bp_to_ENSMUST00000029433, NM_008979, uc008qtv.1_5end |
EntrezGene: | Ptpn22 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 3.98e-24 | 48 |
immune system | 3.98e-24 | 48 |
hematopoietic system | 3.63e-22 | 45 |
blood island | 3.63e-22 | 45 |
hemopoietic organ | 3.18e-18 | 29 |
immune organ | 3.18e-18 | 29 |
mixed endoderm/mesoderm-derived structure | 2.10e-16 | 35 |
segment of respiratory tract | 3.50e-16 | 27 |
gland of gut | 1.82e-15 | 24 |
thymus | 5.02e-15 | 23 |
neck | 5.02e-15 | 23 |
respiratory system epithelium | 5.02e-15 | 23 |
hemolymphoid system gland | 5.02e-15 | 23 |
pharyngeal epithelium | 5.02e-15 | 23 |
thymic region | 5.02e-15 | 23 |
pharyngeal gland | 5.02e-15 | 23 |
entire pharyngeal arch endoderm | 5.02e-15 | 23 |
thymus primordium | 5.02e-15 | 23 |
early pharyngeal endoderm | 5.02e-15 | 23 |
pharynx | 5.02e-14 | 24 |
upper respiratory tract | 5.02e-14 | 24 |
chordate pharynx | 5.02e-14 | 24 |
pharyngeal arch system | 5.02e-14 | 24 |
pharyngeal region of foregut | 5.02e-14 | 24 |
respiratory system | 7.71e-14 | 42 |
respiratory tract | 2.20e-13 | 41 |
lateral plate mesoderm | 3.97e-12 | 87 |
mesoderm | 5.48e-11 | 120 |
mesoderm-derived structure | 5.48e-11 | 120 |
presumptive mesoderm | 5.48e-11 | 120 |
foregut | 1.66e-09 | 80 |
connective tissue | 1.72e-07 | 46 |
craniocervical region | 1.91e-07 | 36 |