FFCP PHASE1:Hg19::chr4:40244302..40244315,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr4:40244302..40244315,+
|short_description=p8@RHOH
|description=CAGE_peak_8_at_RHOH_5end
|association_with_transcript=-18bp_to_AY673956_5end
|EntrezGene=399
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=399 | |EntrezGene=399 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=686 | |HGNC=686 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-18bp_to_AY673956_5end | |||
|cluster_id=chr4:40244302..40244315,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_8_at_RHOH_5end | |||
|id=chr4:40244302..40244315,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.69e-58!42;CL:0000860!7.45e-54!45;CL:0000766!2.82e-42!76;CL:0002194!8.02e-41!63;CL:0000576!8.02e-41!63;CL:0000040!8.02e-41!63;CL:0000559!8.02e-41!63;CL:0002009!2.54e-39!65;CL:0000839!2.19e-38!70;CL:0000557!9.94e-38!71;CL:0000763!1.80e-27!112;CL:0000049!1.80e-27!112;CL:0000738!3.66e-26!140;CL:0002087!1.65e-25!119;CL:0002031!2.10e-22!124;CL:0000037!1.25e-20!172;CL:0000566!1.25e-20!172;CL:0002032!2.80e-19!165;CL:0000837!2.80e-19!165;CL:0000988!6.28e-19!182;CL:0002320!2.80e-08!365;CL:0000134!4.62e-08!358 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.19e-76;33!CL:0002057;4.19e-76;33!CL:0000473;2.07e-58;39!CL:0000234;2.07e-58;39!CL:0000576;2.07e-44;48!CL:0000766;1.30e-30;69!CL:0002087;2.92e-16;104!CL:0000763;1.29e-13;100!CL:0002393;4.49e-10;6!CL:0002397;4.49e-10;6!CL:0000738;7.30e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.71e-85,42;CL:0002057,5.71e-85,42;CL:0000473,3.83e-80,48;CL:0000234,3.83e-80,48;CL:0002194,3.30e-63,59;CL:0000576,3.30e-63,59;CL:0000040,3.30e-63,59;CL:0000559,3.30e-63,59;CL:0002009,5.07e-61,61;CL:0000839,3.99e-56,66;CL:0000766,1.53e-55,72;CL:0000557,3.11e-55,67;CL:0002087,3.96e-36,115;CL:0000763,1.23e-35,108;CL:0000049,1.23e-35,108;CL:0000738,2.25e-32,136;CL:0002031,1.06e-31,120;CL:0000037,2.65e-25,168;CL:0002032,1.71e-24,161;CL:0000837,1.71e-24,161;CL:0000988,9.04e-24,177;CL:0000134,2.39e-09,354;CL:0002320,4.58e-09,361;CL:0000219,4.56e-08,386;CL:0000034,3.17e-07,441;CL:0002393,6.42e-07,9;CL:0002397,6.42e-07,9;CL:0000048,7.62e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;8.81e-57;42!CL:0000049;4.47e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.51e-32!80;UBERON:0002390!5.45e-31!102;UBERON:0003061!5.45e-31!102;UBERON:0002193!5.68e-31!112;UBERON:0001474!1.08e-29!86;UBERON:0002405!6.29e-28!115;UBERON:0004765!4.86e-24!101;UBERON:0001434!4.86e-24!101;UBERON:0002204!3.04e-12!167;UBERON:0003081!1.19e-10!216;UBERON:0002384!9.09e-08!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.07e-48,76;UBERON:0001474,2.04e-44,82;UBERON:0004765,4.18e-40,90;UBERON:0002390,1.07e-39,98;UBERON:0003061,1.07e-39,98;UBERON:0002405,1.12e-38,93;UBERON:0001434,1.13e-35,100;UBERON:0002193,1.29e-35,108;UBERON:0002204,1.48e-19,167;UBERON:0003081,9.06e-17,203;UBERON:0000926,4.65e-09,315;UBERON:0004120,4.65e-09,315;UBERON:0006603,4.65e-09,315;UBERON:0002384,1.12e-08,371 | |||
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| ||
|short_description=p8@RHOH | |||
}} | }} |
Latest revision as of 18:25, 17 September 2015
Short description: | p8@RHOH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_RHOH_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -18bp_to_AY673956_5end |
EntrezGene: | RHOH |
HGNC: | 686 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.71e-85 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.71e-85 | 42 |
defensive cell | 3.83e-80 | 48 |
phagocyte | 3.83e-80 | 48 |
monopoietic cell | 3.30e-63 | 59 |
monocyte | 3.30e-63 | 59 |
monoblast | 3.30e-63 | 59 |
promonocyte | 3.30e-63 | 59 |
macrophage dendritic cell progenitor | 5.07e-61 | 61 |
myeloid lineage restricted progenitor cell | 3.99e-56 | 66 |
myeloid leukocyte | 1.53e-55 | 72 |
granulocyte monocyte progenitor cell | 3.11e-55 | 67 |
nongranular leukocyte | 3.96e-36 | 115 |
myeloid cell | 1.23e-35 | 108 |
common myeloid progenitor | 1.23e-35 | 108 |
leukocyte | 2.25e-32 | 136 |
hematopoietic lineage restricted progenitor cell | 1.06e-31 | 120 |
hematopoietic stem cell | 2.65e-25 | 168 |
hematopoietic oligopotent progenitor cell | 1.71e-24 | 161 |
hematopoietic multipotent progenitor cell | 1.71e-24 | 161 |
hematopoietic cell | 9.04e-24 | 177 |
mesenchymal cell | 2.39e-09 | 354 |
connective tissue cell | 4.58e-09 | 361 |
motile cell | 4.56e-08 | 386 |
stem cell | 3.17e-07 | 441 |
intermediate monocyte | 6.42e-07 | 9 |
CD14-positive, CD16-positive monocyte | 6.42e-07 | 9 |
multi fate stem cell | 7.62e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.07e-48 | 76 |
bone element | 2.04e-44 | 82 |
skeletal element | 4.18e-40 | 90 |
hematopoietic system | 1.07e-39 | 98 |
blood island | 1.07e-39 | 98 |
immune system | 1.12e-38 | 93 |
skeletal system | 1.13e-35 | 100 |
hemolymphoid system | 1.29e-35 | 108 |
musculoskeletal system | 1.48e-19 | 167 |
lateral plate mesoderm | 9.06e-17 | 203 |
mesoderm | 4.65e-09 | 315 |
mesoderm-derived structure | 4.65e-09 | 315 |
presumptive mesoderm | 4.65e-09 | 315 |
connective tissue | 1.12e-08 | 371 |