FFCP PHASE1:Hg19::chr7:100450328..100450398,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:100450328..100450398,+
|short_description=p1@SLC12A9
|description=CAGE_peak_1_at_SLC12A9_5end
|association_with_transcript=0bp_to_ENST00000275729,ENST00000...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=56996 | |EntrezGene=56996 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17435 | |HGNC=17435 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BXP2,C9JBD8,C9J0I5,F8WEK3,F5H8C2,Q9H7I6 | |UniProt=Q9BXP2,C9JBD8,C9J0I5,F8WEK3,F5H8C2,Q9H7I6 | ||
|association_with_transcript=0bp_to_ENST00000275729,ENST00000354161,ENST00000415287,ENST00000416675,ENST00000418037,ENST00000428758,ENST00000448342,ENST00000462106,ENST00000540482,NM_020246,uc003uwo.1,uc003uwp.2,uc003uwq.2_5end | |||
|cluster_id=chr7:100450328..100450398,+ | |||
|coexpression_cluster_id=C3790 | |||
|description=CAGE_peak_1_at_SLC12A9_5end | |||
|id=chr7:100450328..100450398,+ | |||
|ontology_enrichment_celltype=CL:0002009!2.48e-14!65;CL:0002194!1.15e-13!63;CL:0000576!1.15e-13!63;CL:0000040!1.15e-13!63;CL:0000559!1.15e-13!63;CL:0002087!1.64e-13!119;CL:0000766!2.66e-13!76;CL:0000738!3.10e-13!140;CL:0002057!2.86e-11!42;CL:0000557!1.25e-10!71;CL:0002031!3.79e-09!124;CL:0000860!9.41e-09!45;CL:0000839!1.82e-08!70;CL:0000037!4.69e-08!172;CL:0000566!4.69e-08!172;CL:0000988!4.73e-08!182;CL:0002032!4.58e-07!165;CL:0000837!4.58e-07!165;CL:0002393!6.75e-07!9;CL:0002397!6.75e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000576;4.67e-09;48!CL:0000473;5.13e-08;39!CL:0000234;5.13e-08;39!CL:0000766;7.52e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,5.26e-18,61;CL:0002194,2.64e-17,59;CL:0000576,2.64e-17,59;CL:0000040,2.64e-17,59;CL:0000559,2.64e-17,59;CL:0000766,1.82e-16,72;CL:0002087,6.03e-16,115;CL:0000738,1.98e-15,136;CL:0000473,4.49e-14,48;CL:0000234,4.49e-14,48;CL:0000557,1.71e-13,67;CL:0000860,2.86e-11,42;CL:0002057,2.86e-11,42;CL:0002031,5.14e-11,120;CL:0000839,5.87e-11,66;CL:0000037,1.66e-09,168;CL:0000988,2.53e-09,177;CL:0002032,1.98e-08,161;CL:0000837,1.98e-08,161;CL:0000763,1.59e-07,108;CL:0000049,1.59e-07,108;CL:0002393,6.75e-07,9;CL:0002397,6.75e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;1.63e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!1.60e-16!216;UBERON:0002193!9.85e-15!112;UBERON:0002390!2.08e-14!102;UBERON:0003061!2.08e-14!102;UBERON:0002371!5.77e-10!80;UBERON:0001474!3.01e-09!86;UBERON:0002405!1.00e-08!115;UBERON:0004765!7.91e-08!101;UBERON:0001434!7.91e-08!101;UBERON:0002204!4.76e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,5.66e-19,203;UBERON:0002193,2.14e-17,108;UBERON:0002390,3.47e-17,98;UBERON:0003061,3.47e-17,98;UBERON:0002405,1.18e-13,93;UBERON:0004765,1.17e-12,90;UBERON:0002371,1.64e-12,76;UBERON:0001474,1.43e-11,82;UBERON:0001434,2.44e-10,100;UBERON:0002204,9.61e-09,167;UBERON:0000926,2.66e-08,315;UBERON:0004120,2.66e-08,315;UBERON:0006603,2.66e-08,315 | |||
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| ||
|short_description=p1@SLC12A9 | |||
}} | }} |
Latest revision as of 14:34, 24 September 2015
Short description: | p1@SLC12A9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC12A9_5end |
Coexpression cluster: | C3790_Neutrophils_Eosinophils_Mesenchymal_Whole_Alveolar_blood_CD14 |
Association with transcript: | 0bp_to_ENST00000275729, ENST00000354161, ENST00000415287, ENST00000416675, ENST00000418037, ENST00000428758, ENST00000448342, ENST00000462106, ENST00000540482, NM_020246, uc003uwo.1, uc003uwp.2, uc003uwq.2_5end |
EntrezGene: | SLC12A9 |
HGNC: | 17435 |
UniProt: | Q9BXP2C9JBD8C9J0I5F8WEK3F5H8C2Q9H7I6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 5.26e-18 | 61 |
monopoietic cell | 2.64e-17 | 59 |
monocyte | 2.64e-17 | 59 |
monoblast | 2.64e-17 | 59 |
promonocyte | 2.64e-17 | 59 |
myeloid leukocyte | 1.82e-16 | 72 |
nongranular leukocyte | 6.03e-16 | 115 |
leukocyte | 1.98e-15 | 136 |
defensive cell | 4.49e-14 | 48 |
phagocyte | 4.49e-14 | 48 |
granulocyte monocyte progenitor cell | 1.71e-13 | 67 |
classical monocyte | 2.86e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.86e-11 | 42 |
hematopoietic lineage restricted progenitor cell | 5.14e-11 | 120 |
myeloid lineage restricted progenitor cell | 5.87e-11 | 66 |
hematopoietic stem cell | 1.66e-09 | 168 |
hematopoietic cell | 2.53e-09 | 177 |
hematopoietic oligopotent progenitor cell | 1.98e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.98e-08 | 161 |
myeloid cell | 1.59e-07 | 108 |
common myeloid progenitor | 1.59e-07 | 108 |
intermediate monocyte | 6.75e-07 | 9 |
CD14-positive, CD16-positive monocyte | 6.75e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 5.66e-19 | 203 |
hemolymphoid system | 2.14e-17 | 108 |
hematopoietic system | 3.47e-17 | 98 |
blood island | 3.47e-17 | 98 |
immune system | 1.18e-13 | 93 |
skeletal element | 1.17e-12 | 90 |
bone marrow | 1.64e-12 | 76 |
bone element | 1.43e-11 | 82 |
skeletal system | 2.44e-10 | 100 |
musculoskeletal system | 9.61e-09 | 167 |
mesoderm | 2.66e-08 | 315 |
mesoderm-derived structure | 2.66e-08 | 315 |
presumptive mesoderm | 2.66e-08 | 315 |