FFCP PHASE1:Hg19::chr9:32526299..32526346,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr9:32526299..32526346,-
|short_description=p2@DDX58
|description=CAGE_peak_2_at_DDX58_5end
|association_with_transcript=0bp_to_ENST00000379882,ENST00000379883...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23586 | |EntrezGene=23586 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19102 | |HGNC=19102 | ||
|TSSclassifier=strong | |||
|UniProt=O95786,F5GY09 | |UniProt=O95786,F5GY09 | ||
|association_with_transcript=0bp_to_ENST00000379882,ENST00000379883,ENST00000542960,NM_014314,uc003zra.2,uc010mjj.2,uc010mjk.1,uc011lnr.1_5end | |||
|cluster_id=chr9:32526299..32526346,- | |||
|coexpression_cluster_id=C57 | |||
|description=CAGE_peak_2_at_DDX58_5end | |||
|id=chr9:32526299..32526346,- | |||
|ontology_enrichment_celltype=CL:0000037!8.67e-40!172;CL:0000566!8.67e-40!172;CL:0002032!1.16e-37!165;CL:0000837!1.16e-37!165;CL:0000738!1.71e-35!140;CL:0000988!1.14e-34!182;CL:0002087!2.97e-30!119;CL:0002031!3.17e-30!124;CL:0000542!1.63e-28!53;CL:0000051!1.63e-28!53;CL:0000838!5.12e-28!52;CL:0000084!3.36e-14!25;CL:0000827!3.36e-14!25;CL:0000945!3.45e-13!24;CL:0000826!3.45e-13!24;CL:0000763!5.65e-13!112;CL:0000049!5.65e-13!112;CL:0000791!7.13e-13!18;CL:0000789!7.13e-13!18;CL:0002420!7.13e-13!18;CL:0002419!7.13e-13!18;CL:0000790!7.13e-13!18;CL:0000766!6.47e-10!76;CL:0000236!7.20e-10!14;CL:0000625!7.22e-09!11;CL:0000839!1.13e-07!70;CL:0002057!2.96e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000542;9.03e-23;53!CL:0000084;8.56e-20;25!CL:0000791;2.01e-19;18!CL:0000789;2.01e-19;18!CL:0002419;2.01e-19;18!CL:0000945;1.02e-17;24!CL:0000625;4.27e-13;11!CL:0000236;1.33e-12;13!CL:0002087;5.65e-12;104!CL:0000738;2.37e-08;136!CL:0000094;1.41e-07;8!CL:0000988;1.69e-07;177!CL:0000624;3.44e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.65e-45,168;CL:0002032,1.12e-42,161;CL:0000837,1.12e-42,161;CL:0000738,4.76e-42,136;CL:0000988,3.01e-41,177;CL:0000542,5.95e-40,53;CL:0000051,5.95e-40,53;CL:0000838,3.61e-39,52;CL:0002087,4.20e-36,115;CL:0002031,3.14e-35,120;CL:0000084,6.27e-20,25;CL:0000827,6.27e-20,25;CL:0000791,2.08e-19,18;CL:0000789,2.08e-19,18;CL:0002420,2.08e-19,18;CL:0002419,2.08e-19,18;CL:0000790,2.08e-19,18;CL:0000945,2.09e-17,24;CL:0000826,2.09e-17,24;CL:0000236,2.33e-13,14;CL:0000625,4.34e-13,11;CL:0000763,3.00e-11,108;CL:0000049,3.00e-11,108;CL:0000766,3.56e-09,72;CL:0002393,2.20e-08,9;CL:0002397,2.20e-08,9;CL:0000094,1.13e-07,8;CL:0000624,3.44e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000051;9.03e-23;53!CL:0000790;2.01e-19;18 | |||
|ontology_enrichment_disease=DOID:2531!3.61e-09!51;DOID:0060083!3.61e-09!51;DOID:1240!2.42e-07!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2531,4.12e-09,51;DOID:0060083,4.12e-09,51;DOID:1240,5.62e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.27e-15!115;UBERON:0002390!1.15e-12!102;UBERON:0003061!1.15e-12!102;UBERON:0002193!1.32e-10!112;UBERON:0000178!3.52e-07!15;UBERON:0000179!3.52e-07!15;UBERON:0000463!3.52e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.56e-09;15!UBERON:0000179;1.56e-09;15!UBERON:0000463;1.56e-09;15!UBERON:0002390;3.16e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.58e-13,98;UBERON:0003061,1.58e-13,98;UBERON:0002193,2.20e-12,108;UBERON:0007023,1.23e-09,114;UBERON:0000178,1.59e-09,15;UBERON:0000179,1.59e-09,15;UBERON:0000463,1.59e-09,15;UBERON:0004177,1.47e-07,7;UBERON:0005057,1.47e-07,7;UBERON:0002405,4.69e-07,93 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0.730310090387373,0,0.246242116153576,0.204000691244253,0.313454721478088,0,0.410623275218653,0.376627918784408,7.03003332881152,4.43343183029707,6.61170563034906,2.36018566109342,4.60595277716655,1.39334510984468,0,0,0,1.08454080812422,0.995184627411951,3.22960483268332,6.09394949385065,3.20871115952227,4.34021741431704,1.11957737119962,6.15397965436061,1.80302897343931,2.32637182047304,0.755751887377619,0.970336244751265,0.697287110717054,0,0.309706370895104,0.863077176966451,0.512321413058201,0.236482229888585,1.37898272294647,0.645484683583826,1.35426486594342,1.12945403725563,0.545812300115692,0.224723484445085,0.306083892370903,1.28371610830437,0.639337125799041,0.329851300186716,1.99463657621632,0.426224750532694,0.870627715885752,0.56738522469114,0,1.50749199154046,0,0.434377689410233,3.02699751316684,0.368277635987565,0.316462387440884,3.38008458099107,4.03948169933583,4.61249020118427,2.69588714751588,2.25265339262259,2.08943262706204,5.41524213108372,8.15558376516269,6.75857368929146,22.879511779972,35.4990097320385,38.2488979161329,38.8324502535522,24.4241552091968,28.1628695577697,25.7807500386096,27.6675588815256,16.507176104174,7.6340834618222,11.0859236156316,3.96513985737078,1.68152568894461,4.21414535640123,9.44206896546399,7.8602152549833,7.19605246498282,19.8951929514907,17.2738801315803,20.8317034523283,11.6896037044747,15.374643050154,16.7925367260657,13.7351014641845,13.5401931882508,13.9619538500986,17.037774530344,15.4571630327456,13.2648008537207,15.3595635439578,22.2429844743091,19.7980212786388,15.6803285707465,17.4496387754252,16.8617017184845,16.8377448286489,18.4704375174237,29.3080181178169,34.5074230543902,38.018081777935,17.1655635748661,22.9096033966409,29.983374372563,30.5442655136782,32.0239918799208,11.289977620585,8.82552646085574,8.68946423296794,0,0,0,0,0,0,0,0,0.472674085820339,0.221729397462564,0.175669571386252,0.982343066232845,0,0,0,1.39303789839414,0.132957960518865,0.238490624305342,0.571994910780128,0,0,0,0.347140501607594,0,0,0,0.208994966536811,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,11.6334079244498,0,0,0,0.529636723252875,0,0,0,0,0,0.622422070799533,0,0,0.151357427644931,0.576175924479999,0.234321431833797,0,0,0,0,0.161872944368132,0.421352420106746,0,0.245668634623536,0,1.18800285728205,0,0,0,0.336672227908132,0,0,0,0,0.150238058906597,0.226864366320042,0.179389635688862,0,0,0,0.103052529238439,0,0.18611685633159,0.168776332241266,0.194874010322397,0.252433774244115,0,0.646584227275248,0,0,0,0,0,0,1.95157929807353,2.25300606146525,1.04574548582567,0.518305275076852,1.7662459561294,0.72995471815166,0,1.28648187638577,0,0,0,0,0,0,0.220587945464788,0.217879444092406,0,0,0,0,0.738155454624648,0,0,0,0,0,1.77236972004421,2.6487785964879,0.737930631258681,0,0.329250856225877,0,0.100528972411631,0.0925884451585296,0,0,0,0.34779121492523,0.117408694235822,0,0,0,0.790204397959275,1.71697232418975,1.96973604869918,0,0.148631162288728,0,0,0.425325291727159,0,0,0,0.492663237895943,8.4526496652697,3.7319060797339,1.58531948758658,2.5248486685276,0,0.381988425558278,0,0,0,0.300343057843917,0.571652865261156,0.224262168690721,0,0.36669142910475,0,0,0,0.26593811658487,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0.871533458600294,0.099972991182057,0,0.502257091432126,0,0,0,0,0.144781306667579,0.205476322550383,0.358121926479791,5.26800176769578,12.2159071325195,9.70324086867828,8.08561128562415,0,0,0,0.335032530668698,0,6.74106321552464,11.966458368161,28.5946704270864,0.49076596687656,0,0,0.415941723061614,0,0,0.35142424497814,0,0,0,0,0,0,0,0,11.3722414367588,6.68714022537712,8.11129439306177,0,0,0,0,0.306923946576125,0.280660094433074,0.128139149255701,0,0,0,0.154209693802656,0,0.164254312027618,0,0.232420756919918,0.241718899183244,0.200506470303285,0,0.114814448164607,0,0,0,0.231046011313244,1.56869953835371,0,0.211103257785751,0,0,0.215915916102139,0,0,0,0.254876273045038,0,0,2.63111851975121,1.8300481571743,0,0,0.650756789328606,1.23649213977267,0.183138929636687,0.330037999682352,0,0,0,0.096670718292122,0,0,0,0.107420244868274,0.145016693914229,0.0852266274161009,0.267096106940212,0,0,0.127612712494584,0,0,0,0,0.308033580176089,0,0,0,0,0.372158369359667,0.316379424718726,0.190630193923825,0,0,0,0,0.359744915166629,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0.30982349809975,0,0,0,0,0.354761064070598,0.211107635297664,0.329294892959902,0,0,0,0.670302275535787,0,0.941438007767792,0,0,0,0.459446800413919,10.6563997938756,14.5281069357051,16.5197684280507,22.3937868930322,27.561272296775,9.72709966789076,8.10047155857172,30.9318818754765,0.106824071127473,0,0,4.27347302789153,7.93480671370447,3.27252479402705,2.55082036366116,1.99579371432817,1.53204296105893,2.11673582723883,0.649243880549111,3.08876895924805,7.75997908712854,0.626719583092093,0,1.35433422241283,5.78117070373318,2.21979677910152,3.83261613921294,1.37402137902306,5.2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| ||
|short_description=p2@DDX58 | |||
}} | }} |
Latest revision as of 02:36, 17 September 2015
Short description: | p2@DDX58 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_DDX58_5end |
Coexpression cluster: | C57_Neutrophils_Eosinophils_Whole_CD4_CD8_CD19_Natural |
Association with transcript: | 0bp_to_ENST00000379882, ENST00000379883, ENST00000542960, NM_014314, uc003zra.2, uc010mjj.2, uc010mjk.1, uc011lnr.1_5end |
EntrezGene: | DDX58 |
HGNC: | 19102 |
UniProt: | O95786F5GY09 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.65e-45 | 168 |
hematopoietic oligopotent progenitor cell | 1.12e-42 | 161 |
hematopoietic multipotent progenitor cell | 1.12e-42 | 161 |
leukocyte | 4.76e-42 | 136 |
hematopoietic cell | 3.01e-41 | 177 |
lymphocyte | 5.95e-40 | 53 |
common lymphoid progenitor | 5.95e-40 | 53 |
lymphoid lineage restricted progenitor cell | 3.61e-39 | 52 |
nongranular leukocyte | 4.20e-36 | 115 |
hematopoietic lineage restricted progenitor cell | 3.14e-35 | 120 |
T cell | 6.27e-20 | 25 |
pro-T cell | 6.27e-20 | 25 |
mature alpha-beta T cell | 2.08e-19 | 18 |
alpha-beta T cell | 2.08e-19 | 18 |
immature T cell | 2.08e-19 | 18 |
mature T cell | 2.08e-19 | 18 |
immature alpha-beta T cell | 2.08e-19 | 18 |
lymphocyte of B lineage | 2.09e-17 | 24 |
pro-B cell | 2.09e-17 | 24 |
B cell | 2.33e-13 | 14 |
CD8-positive, alpha-beta T cell | 4.34e-13 | 11 |
myeloid cell | 3.00e-11 | 108 |
common myeloid progenitor | 3.00e-11 | 108 |
myeloid leukocyte | 3.56e-09 | 72 |
intermediate monocyte | 2.20e-08 | 9 |
CD14-positive, CD16-positive monocyte | 2.20e-08 | 9 |
granulocyte | 1.13e-07 | 8 |
CD4-positive, alpha-beta T cell | 3.44e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.58e-13 | 98 |
blood island | 1.58e-13 | 98 |
hemolymphoid system | 2.20e-12 | 108 |
adult organism | 1.23e-09 | 114 |
blood | 1.59e-09 | 15 |
haemolymphatic fluid | 1.59e-09 | 15 |
organism substance | 1.59e-09 | 15 |
hemopoietic organ | 1.47e-07 | 7 |
immune organ | 1.47e-07 | 7 |
immune system | 4.69e-07 | 93 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 4.12e-09 | 51 |
immune system cancer | 4.12e-09 | 51 |
leukemia | 5.62e-07 | 39 |