FFCP PHASE1:Hg19::chr3:11314055..11314071,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10533 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16935 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000460444,ENST00000470474_5end | |||
|cluster_id=chr3:11314055..11314071,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_2_at_ATG7_5end | |||
|id=chr3:11314055..11314071,+ | |||
|ontology_enrichment_celltype=CL:0000766!1.66e-27!76;CL:0002057!6.55e-25!42;CL:0002009!3.28e-24!65;CL:0000557!3.90e-24!71;CL:0002194!1.91e-23!63;CL:0000576!1.91e-23!63;CL:0000040!1.91e-23!63;CL:0000559!1.91e-23!63;CL:0000839!4.56e-23!70;CL:0000860!2.83e-21!45;CL:0000763!3.61e-16!112;CL:0000049!3.61e-16!112;CL:0000048!1.19e-08!430;CL:0000723!1.73e-08!436;CL:0000738!2.12e-08!140;CL:0000034!1.14e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000473;6.87e-20;39!CL:0000234;6.87e-20;39!CL:0000860;1.11e-19;33!CL:0002057;1.11e-19;33!CL:0000576;1.99e-18;48!CL:0000766;1.43e-15;69!CL:0000763;2.01e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.45e-32,72;CL:0000473,7.21e-30,48;CL:0000234,7.21e-30,48;CL:0002009,1.68e-29,61;CL:0000557,6.92e-29,67;CL:0002194,1.05e-28,59;CL:0000576,1.05e-28,59;CL:0000040,1.05e-28,59;CL:0000559,1.05e-28,59;CL:0000839,1.08e-27,66;CL:0000860,6.99e-26,42;CL:0002057,6.99e-26,42;CL:0000763,1.87e-19,108;CL:0000049,1.87e-19,108;CL:0000738,2.11e-09,136;CL:0000048,4.23e-09,427;CL:0000723,7.16e-09,433;CL:0000034,3.57e-08,441;CL:0002031,2.37e-07,120;CL:0002087,4.74e-07,115 | |||
|ontology_enrichment_development_v019=CL:0002057;3.20e-19;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.58e-20!80;UBERON:0002193!8.61e-19!112;UBERON:0001474!1.05e-18!86;UBERON:0002390!2.16e-18!102;UBERON:0003061!2.16e-18!102;UBERON:0002204!9.74e-18!167;UBERON:0004765!2.01e-15!101;UBERON:0001434!2.01e-15!101;UBERON:0002405!1.72e-13!115;UBERON:0003081!4.74e-13!216;UBERON:0000467!1.97e-08!625;UBERON:0000480!3.73e-08!626;UBERON:0000468!2.93e-07!659;UBERON:0000062!8.20e-07!511 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.03e-24,76;UBERON:0002405,3.92e-22,93;UBERON:0002193,6.26e-22,108;UBERON:0001474,1.02e-21,82;UBERON:0002390,1.45e-21,98;UBERON:0003061,1.45e-21,98;UBERON:0004765,7.35e-19,90;UBERON:0002204,2.35e-18,167;UBERON:0001434,2.91e-16,100;UBERON:0003081,8.54e-15,203;UBERON:0000926,3.13e-13,315;UBERON:0004120,3.13e-13,315;UBERON:0006603,3.13e-13,315;UBERON:0000923,2.49e-07,560;UBERON:0010316,2.49e-07,560;UBERON:0005291,2.49e-07,560;UBERON:0006598,2.49e-07,560;UBERON:0010317,2.49e-07,560;UBERON:0002532,2.49e-07,560;UBERON:0005423,3.03e-07,581;UBERON:0002050,3.17e-07,564;UBERON:0000922,9.44e-07,592 | |||
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| |||
|short_description=p2@ATG7 | |||
}} |
Latest revision as of 15:21, 19 September 2015
Short description: | p2@ATG7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ATG7_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000460444, ENST00000470474_5end |
EntrezGene: | ATG7 |
HGNC: | 16935 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.45e-32 | 72 |
defensive cell | 7.21e-30 | 48 |
phagocyte | 7.21e-30 | 48 |
macrophage dendritic cell progenitor | 1.68e-29 | 61 |
granulocyte monocyte progenitor cell | 6.92e-29 | 67 |
monopoietic cell | 1.05e-28 | 59 |
monocyte | 1.05e-28 | 59 |
monoblast | 1.05e-28 | 59 |
promonocyte | 1.05e-28 | 59 |
myeloid lineage restricted progenitor cell | 1.08e-27 | 66 |
classical monocyte | 6.99e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.99e-26 | 42 |
myeloid cell | 1.87e-19 | 108 |
common myeloid progenitor | 1.87e-19 | 108 |
leukocyte | 2.11e-09 | 136 |
multi fate stem cell | 4.23e-09 | 427 |
somatic stem cell | 7.16e-09 | 433 |
stem cell | 3.57e-08 | 441 |
hematopoietic lineage restricted progenitor cell | 2.37e-07 | 120 |
nongranular leukocyte | 4.74e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.03e-24 | 76 |
immune system | 3.92e-22 | 93 |
hemolymphoid system | 6.26e-22 | 108 |
bone element | 1.02e-21 | 82 |
hematopoietic system | 1.45e-21 | 98 |
blood island | 1.45e-21 | 98 |
skeletal element | 7.35e-19 | 90 |
musculoskeletal system | 2.35e-18 | 167 |
skeletal system | 2.91e-16 | 100 |
lateral plate mesoderm | 8.54e-15 | 203 |
mesoderm | 3.13e-13 | 315 |
mesoderm-derived structure | 3.13e-13 | 315 |
presumptive mesoderm | 3.13e-13 | 315 |
germ layer | 2.49e-07 | 560 |
germ layer / neural crest | 2.49e-07 | 560 |
embryonic tissue | 2.49e-07 | 560 |
presumptive structure | 2.49e-07 | 560 |
germ layer / neural crest derived structure | 2.49e-07 | 560 |
epiblast (generic) | 2.49e-07 | 560 |
developing anatomical structure | 3.03e-07 | 581 |
embryonic structure | 3.17e-07 | 564 |
embryo | 9.44e-07 | 592 |