FFCP PHASE1:Mm9::chr11:98698089..98698145,+: Difference between revisions
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{{FFCP|EntrezGene=268480|HGNC=|MCL_coexpression_id=1610|UniProt=Q68EF8|association_with_transcript=0bp_to_ENSMUST00000107479,NM_001080925,uc007lhr.1_5end|description=CAGE_peak_1_at_Rapgefl1_5end|id=chr11:98698089..98698145,+|ontology_enrichment_celltype=CL:0000117!6.73e-07!23;CL:0000337!6.73e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,4.81e-07,23;CL:0000337,4.81e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!1.90e-14!63;UBERON:0001049!1.10e-13!52;UBERON:0005068!1.10e-13!52;UBERON:0006241!1.10e-13!52;UBERON:0007135!1.10e-13!52;UBERON:0000955!8.00e-13!50;UBERON:0006238!8.00e-13!50;UBERON:0002616!2.81e-12!49;UBERON:0002020!4.20e-12!34;UBERON:0001017!1.32e-11!73;UBERON:0005743!1.32e-11!73;UBERON:0004121!2.60e-11!102;UBERON:0000924!2.60e-11!102;UBERON:0006601!2.60e-11!102;UBERON:0003056!1.49e-10!49;UBERON:0000073!2.09e-10!75;UBERON:0001016!2.09e-10!75;UBERON:0003080!2.37e-10!40;UBERON:0002780!6.42e-10!39;UBERON:0001890!6.42e-10!39;UBERON:0006240!6.42e-10!39;UBERON:0002791!1.18e-09!29;UBERON:0003528!1.18e-09!29;UBERON:0001893!1.18e-09!29;UBERON:0002346!2.75e-09!71;UBERON:0003075!2.75e-09!71;UBERON:0007284!2.75e-09!71;UBERON:0000153!7.87e-08!94;UBERON:0000468!1.13e-07!333;UBERON:0002021!1.32e-07!10;UBERON:0000411!1.32e-07!10;UBERON:0001950!1.32e-07!10;UBERON:0000956!3.38e-07!21;UBERON:0001869!3.38e-07!21;UBERON:0000203!3.38e-07!21;UBERON:0007811!8.40e-07!86;UBERON:0002619!9.93e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.81e-15,54;UBERON:0010371,5.09e-15,73;UBERON:0001049,3.45e-14,52;UBERON:0005068,3.45e-14,52;UBERON:0006241,3.45e-14,52;UBERON:0007135,3.45e-14,52;UBERON:0004121,7.97e-14,95;UBERON:0000924,7.97e-14,95;UBERON:0006601,7.97e-14,95;UBERON:0002020,2.17e-12,34;UBERON:0002346,2.30e-12,64;UBERON:0003075,2.30e-12,64;UBERON:0007284,2.30e-12,64;UBERON:0000955,7.92e-12,47;UBERON:0006238,7.92e-12,47;UBERON:0001017,1.11e-11,73;UBERON:0002616,2.78e-11,46;UBERON:0003056,8.47e-11,49;UBERON:0003080,1.37e-10,40;UBERON:0001016,1.42e-10,75;UBERON:0002780,3.81e-10,39;UBERON:0001890,3.81e-10,39;UBERON:0006240,3.81e-10,39;UBERON:0003528,7.09e-10,29;UBERON:0002791,7.09e-10,29;UBERON:0001893,7.09e-10,29;UBERON:0002021,9.06e-08,10;UBERON:0000411,9.06e-08,10;UBERON:0001950,9.06e-08,10;UBERON:0000956,2.37e-07,21;UBERON:0001869,2.37e-07,21;UBERON:0000203,2.37e-07,21;UBERON:0002619,7.17e-07,17|phase1_expression=11.3705681444404,8.37540978334467,10.4649825059593,16.3330674105688,20.0358291978539,3.69334398206158,3.03696432774183,0,0.281577444303333,0.468129052643987,0,0.0797721589953364,0,0.0874204024189974,0,0,0,0.946386496074713,0.685572168028694,0.84877930359606,8.92954546586233,1.29078236561151,0.783599367416806,5.91971964335605,6.8822784320151,2.8711598205751,6.8921919385452,3.44753972297422,12.5415456841207,12.3494763582366,3.32595765982957,0.635030673459631,0,0,3.46621943701529,3.32469290716985,2.6542016314108,0,0,0,1.17646297606203,0,0.485510353031154,0.755380907853464,0.608261587317087,0.183546752161682,3.12956537739216,0,2.41654801007919,1.1665793944457,0.699932108126813,1.43752564364972,0.671130424230945,0,0,0.514518872071894,0.85960031981627,0,8.6996078169627,7.93486468908049,12.0427966666174,0,0,0.449949858640699,1.97773272513395,0,1.79760066311043,2.68952813725088,4.87341177849845,4.05017814995072,5.04779907243317,27.4224945027651,26.0624878322904,3.1847607795888,1.82106394934649,6.43453150627015,28.6301290598411,24.2605942361857,17.8183578577242,8.5726087024626,9.33173964744578,9.37644067002168,13.1216009530649,14.069065250792,20.3221669543157,29.7574871328404,21.9252388430619,15.4711540034999,0.151452386666368,0.0755715601067855,2.02905142091174,0,0,0.539703191637817,0,0.448026887097336,4.91555470461132,0.681721290312231,0.259786004602869,0.35333957451034,6.05626705039726,1.28326477414318,5.09610479413291,7.11066703153331,2.59789249213457,0.760079596425296,3.0331466700887,4.33898742932428,0,0.742210695324124,1.38788261412909,0.608930956624282,0.922461989024234,1.05505848386836,1.76383060703557,0.251333182659351,0.247194967734374,0.578397427679647,0,1.7794353494215,1.98757366614354,2.90925151881133,24.2309289583559,14.3462590535658,22.2013509222262,14.3055950916811,0,0,0,20.2217363196511,22.8750301409313,8.67015029578764,57.7096743038358,52.1659532953874,17.2464076984435,26.76980840618,2.64782346010822,2.73695335342205,1.26361379216837,9.46988351489133,4.29397461776922,3.44853156650209,3.60124259610698,5.42537344208574,4.150226448231,3.33095672740609,2.81105173679186,8.2785078636485,3.01795190105979,5.67318240503458,7.38994721488585,9.20622076195814,15.2925987074079,33.432207986128,33.5424882344948,1.79130840136644,0,0,0,0.621377317606506,0.938104239924385,1.08037236876609,0.23674473558521,1.37734962223183,1.3884040159864,0.697601834251224,0,0.233530684734339,0.987359099480883,0.492502392237286,0.405344047729279,0.292399974850665,0.658650345873152,0.536825675041487,67.713363437649,26.3435807690968,10.9038198384653,5.81791246659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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=268480 | |||
|HGNC= | |||
|MCL_coexpression_id=1610 | |||
|TSSclassifier=NA | |||
|UniProt=Q68EF8 | |||
|association_with_transcript=0bp_to_ENSMUST00000107479,NM_001080925,uc007lhr.1_5end | |||
|cluster_id=chr11:98698089..98698145,+ | |||
|description=CAGE_peak_1_at_Rapgefl1_5end | |||
|id=chr11:98698089..98698145,+ | |||
|ontology_enrichment_celltype=CL:0000117!6.73e-07!23;CL:0000337!6.73e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.81e-07,23;CL:0000337,4.81e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.90e-14!63;UBERON:0001049!1.10e-13!52;UBERON:0005068!1.10e-13!52;UBERON:0006241!1.10e-13!52;UBERON:0007135!1.10e-13!52;UBERON:0000955!8.00e-13!50;UBERON:0006238!8.00e-13!50;UBERON:0002616!2.81e-12!49;UBERON:0002020!4.20e-12!34;UBERON:0001017!1.32e-11!73;UBERON:0005743!1.32e-11!73;UBERON:0004121!2.60e-11!102;UBERON:0000924!2.60e-11!102;UBERON:0006601!2.60e-11!102;UBERON:0003056!1.49e-10!49;UBERON:0000073!2.09e-10!75;UBERON:0001016!2.09e-10!75;UBERON:0003080!2.37e-10!40;UBERON:0002780!6.42e-10!39;UBERON:0001890!6.42e-10!39;UBERON:0006240!6.42e-10!39;UBERON:0002791!1.18e-09!29;UBERON:0003528!1.18e-09!29;UBERON:0001893!1.18e-09!29;UBERON:0002346!2.75e-09!71;UBERON:0003075!2.75e-09!71;UBERON:0007284!2.75e-09!71;UBERON:0000153!7.87e-08!94;UBERON:0000468!1.13e-07!333;UBERON:0002021!1.32e-07!10;UBERON:0000411!1.32e-07!10;UBERON:0001950!1.32e-07!10;UBERON:0000956!3.38e-07!21;UBERON:0001869!3.38e-07!21;UBERON:0000203!3.38e-07!21;UBERON:0007811!8.40e-07!86;UBERON:0002619!9.93e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.81e-15,54;UBERON:0010371,5.09e-15,73;UBERON:0001049,3.45e-14,52;UBERON:0005068,3.45e-14,52;UBERON:0006241,3.45e-14,52;UBERON:0007135,3.45e-14,52;UBERON:0004121,7.97e-14,95;UBERON:0000924,7.97e-14,95;UBERON:0006601,7.97e-14,95;UBERON:0002020,2.17e-12,34;UBERON:0002346,2.30e-12,64;UBERON:0003075,2.30e-12,64;UBERON:0007284,2.30e-12,64;UBERON:0000955,7.92e-12,47;UBERON:0006238,7.92e-12,47;UBERON:0001017,1.11e-11,73;UBERON:0002616,2.78e-11,46;UBERON:0003056,8.47e-11,49;UBERON:0003080,1.37e-10,40;UBERON:0001016,1.42e-10,75;UBERON:0002780,3.81e-10,39;UBERON:0001890,3.81e-10,39;UBERON:0006240,3.81e-10,39;UBERON:0003528,7.09e-10,29;UBERON:0002791,7.09e-10,29;UBERON:0001893,7.09e-10,29;UBERON:0002021,9.06e-08,10;UBERON:0000411,9.06e-08,10;UBERON:0001950,9.06e-08,10;UBERON:0000956,2.37e-07,21;UBERON:0001869,2.37e-07,21;UBERON:0000203,2.37e-07,21;UBERON:0002619,7.17e-07,17 | |||
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| |||
|short_description=p1@Rapgefl1 | |||
}} |
Latest revision as of 03:29, 26 September 2015
Short description: | p1@Rapgefl1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rapgefl1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1610 |
Association with transcript: | 0bp_to_ENSMUST00000107479, NM_001080925, uc007lhr.1_5end |
EntrezGene: | Rapgefl1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.81e-07 | 23 |
neuroblast (sensu Vertebrata) | 4.81e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.81e-15 | 54 |
ecto-epithelium | 5.09e-15 | 73 |
neural tube | 3.45e-14 | 52 |
neural rod | 3.45e-14 | 52 |
future spinal cord | 3.45e-14 | 52 |
neural keel | 3.45e-14 | 52 |
ectoderm-derived structure | 7.97e-14 | 95 |
ectoderm | 7.97e-14 | 95 |
presumptive ectoderm | 7.97e-14 | 95 |
gray matter | 2.17e-12 | 34 |
neurectoderm | 2.30e-12 | 64 |
neural plate | 2.30e-12 | 64 |
presumptive neural plate | 2.30e-12 | 64 |
brain | 7.92e-12 | 47 |
future brain | 7.92e-12 | 47 |
central nervous system | 1.11e-11 | 73 |
regional part of brain | 2.78e-11 | 46 |
pre-chordal neural plate | 8.47e-11 | 49 |
anterior neural tube | 1.37e-10 | 40 |
nervous system | 1.42e-10 | 75 |
regional part of forebrain | 3.81e-10 | 39 |
forebrain | 3.81e-10 | 39 |
future forebrain | 3.81e-10 | 39 |
brain grey matter | 7.09e-10 | 29 |
regional part of telencephalon | 7.09e-10 | 29 |
telencephalon | 7.09e-10 | 29 |
occipital lobe | 9.06e-08 | 10 |
visual cortex | 9.06e-08 | 10 |
neocortex | 9.06e-08 | 10 |
cerebral cortex | 2.37e-07 | 21 |
cerebral hemisphere | 2.37e-07 | 21 |
pallium | 2.37e-07 | 21 |
regional part of cerebral cortex | 7.17e-07 | 17 |